Wall clock time and date at job start Tue Mar 31 2020 03:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99530 * 2 1 4 4 C 1.46894 * 111.00507 * 123.95285 * 2 1 3 5 5 C 1.52996 * 109.46941 * 66.04773 * 4 2 1 6 6 O 1.42901 * 109.47267 * 65.00296 * 5 4 2 7 7 C 1.35912 * 117.00171 * 180.02562 * 6 5 4 8 8 C 1.38753 * 120.47508 * 359.97159 * 7 6 5 9 9 N 1.31806 * 120.68012 * 180.02562 * 8 7 6 10 10 C 1.31875 * 121.78537 * 359.97438 * 9 8 7 11 11 C 1.38215 * 120.88410 * 0.02562 * 10 9 8 12 12 C 1.38576 * 119.22506 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.81144 * 180.02562 * 12 11 10 14 14 N 1.46500 * 109.46795 * 259.99749 * 13 12 11 15 15 C 1.34783 * 119.99877 * 179.97438 * 14 13 12 16 16 O 1.21690 * 119.99708 * 0.02562 * 15 14 13 17 17 C 1.46372 * 119.99985 * 179.97438 * 15 14 13 18 18 H 1.07998 * 119.99910 * 0.02562 * 17 15 14 19 19 C 1.40047 * 119.99815 * 180.02562 * 17 15 14 20 20 N 1.30679 * 120.00057 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00011 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46881 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47057 * 119.99922 * 21 19 17 24 24 H 1.48495 * 109.47161 * 240.00219 * 21 19 17 25 25 H 1.09006 * 109.46792 * 296.04081 * 1 2 3 26 26 H 1.08996 * 109.47961 * 56.04703 * 1 2 3 27 27 H 1.09002 * 109.46792 * 176.04654 * 1 2 3 28 28 H 1.08997 * 109.47153 * 183.95919 * 3 2 1 29 29 H 1.08999 * 109.46968 * 303.95744 * 3 2 1 30 30 H 1.09001 * 109.47068 * 63.95269 * 3 2 1 31 31 H 1.08999 * 109.46825 * 306.04767 * 4 2 1 32 32 H 1.08995 * 109.47318 * 186.04721 * 4 2 1 33 33 H 1.08998 * 109.47152 * 305.00024 * 5 4 2 34 34 H 1.09003 * 109.46883 * 184.99819 * 5 4 2 35 35 H 1.08002 * 119.65515 * 0.04521 * 8 7 6 36 36 H 1.08000 * 119.55788 * 180.28032 * 10 9 8 37 37 H 1.07998 * 120.38321 * 179.97438 * 11 10 9 38 38 H 1.08996 * 109.47115 * 19.99719 * 13 12 11 39 39 H 1.08996 * 109.47188 * 140.00028 * 13 12 11 40 40 H 0.96998 * 120.00381 * 0.02562 * 14 13 12 41 41 H 0.96995 * 119.99633 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1375 5 6 1.6317 -2.2425 0.9703 6 8 2.2958 -2.7695 -0.1801 7 6 2.0776 -4.0786 -0.4729 8 6 1.2436 -4.8487 0.3250 9 7 1.0296 -6.1188 0.0452 10 6 1.5919 -6.7055 -0.9934 11 6 2.4349 -6.0037 -1.8344 12 6 2.6873 -4.6657 -1.5767 13 6 3.6001 -3.8663 -2.4705 14 7 4.9232 -3.7630 -1.8501 15 6 5.9092 -3.0883 -2.4740 16 8 5.7002 -2.5646 -3.5524 17 6 7.2311 -2.9846 -1.8540 18 1 7.4164 -3.4491 -0.8968 19 6 8.2554 -2.2831 -2.5020 20 7 8.0309 -1.7206 -3.6600 21 14 9.9425 -2.1513 -1.7111 22 1 9.9374 -2.8698 -0.4114 23 1 10.9585 -2.7588 -2.6080 24 1 10.2731 -0.7213 -1.4854 25 1 -0.3633 0.4512 0.9234 26 1 -0.3635 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0827 1.3434 -0.0710 29 1 1.5896 1.9164 -0.8524 30 1 1.7042 1.8724 0.9233 31 1 1.5612 -0.3872 2.0627 32 1 3.0798 -0.6610 1.1755 33 1 0.5534 -2.3388 0.8432 34 1 1.9442 -2.7962 1.8556 35 1 0.7646 -4.4025 1.1841 36 1 1.3878 -7.7473 -1.1918 37 1 2.8914 -6.4924 -2.6824 38 1 3.6894 -4.3634 -3.4364 39 1 3.1865 -2.8679 -2.6125 40 1 5.0900 -4.1808 -0.9908 41 1 8.7403 -1.2345 -4.1086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494770205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:00 Heat of formation + Delta-G solvation = -59.486408 kcal Electronic energy + Delta-G solvation = -23522.475072 eV Core-core repulsion = 20015.887765 eV Total energy + Delta-G solvation = -3506.587307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.75351 -39.52774 -39.24663 -37.92809 -35.87668 -34.56010 -32.98418 -31.78954 -30.55770 -28.98342 -28.52495 -26.95211 -25.76769 -23.91914 -23.19805 -21.88306 -21.68834 -19.50152 -18.95350 -17.88213 -17.57269 -17.44005 -17.08816 -16.22000 -16.09388 -15.84654 -15.82264 -15.69418 -15.29661 -15.14513 -14.45674 -14.32015 -14.24684 -13.67298 -13.42840 -13.36706 -13.25850 -13.05631 -12.87792 -12.80829 -12.69853 -12.62651 -12.60095 -12.15842 -11.97995 -11.87267 -10.93956 -10.67552 -10.47252 -9.85277 -9.48528 -9.36023 -9.25656 -8.27927 -6.84692 0.08457 0.23537 1.40039 1.40516 1.58409 2.17885 2.25487 2.48452 2.73453 2.97273 3.29465 3.48855 3.55621 3.63542 3.79550 3.82561 3.97823 4.08725 4.17579 4.29340 4.34235 4.42506 4.49661 4.57035 4.58496 4.61428 4.69227 4.81075 4.82699 4.90553 4.98453 4.99410 5.26861 5.32484 5.58731 5.87432 6.01652 6.09199 6.18774 6.26063 6.38215 6.87414 6.93583 7.53460 8.49934 8.68550 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.005034 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.739582 B = 5561.007453 C = 7283.258986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.573 5.573 3 C 0.029 3.971 4 C 0.056 3.944 5 C 0.053 3.947 6 O -0.307 6.307 7 C 0.091 3.909 8 C 0.013 3.987 9 N -0.462 5.462 10 C 0.057 3.943 11 C -0.114 4.114 12 C -0.103 4.103 13 C 0.191 3.809 14 N -0.742 5.742 15 C 0.541 3.459 16 O -0.632 6.632 17 C -0.571 4.571 18 H 0.084 0.916 19 C 0.029 3.971 20 N -0.822 5.822 21 Si 0.998 3.002 22 H -0.248 1.248 23 H -0.267 1.267 24 H -0.268 1.268 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.181 0.819 36 H 0.190 0.810 37 H 0.156 0.844 38 H 0.048 0.952 39 H 0.035 0.965 40 H 0.390 0.610 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.635 -2.324 13.102 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.298 5.298 3 C -0.119 4.119 4 C -0.072 4.072 5 C -0.022 4.022 6 O -0.218 6.218 7 C 0.042 3.958 8 C -0.145 4.145 9 N -0.172 5.172 10 C -0.100 4.100 11 C -0.134 4.134 12 C -0.112 4.112 13 C 0.067 3.933 14 N -0.396 5.396 15 C 0.345 3.655 16 O -0.519 6.519 17 C -0.607 4.607 18 H 0.103 0.897 19 C -0.185 4.185 20 N -0.452 5.452 21 Si 0.817 3.183 22 H -0.171 1.171 23 H -0.192 1.192 24 H -0.193 1.193 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.198 0.802 36 H 0.207 0.793 37 H 0.173 0.827 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.223 0.777 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.033 -2.373 12.178 19.492 hybrid contribution 0.965 1.041 0.410 1.477 sum -14.069 -1.331 12.588 18.925 Atomic orbital electron populations 1.22453 0.86194 1.02438 1.01314 1.61835 1.09161 1.14731 1.44029 1.22327 1.00209 0.88156 1.01242 1.22202 1.01106 0.91205 0.92646 1.23211 0.97614 0.94407 0.86965 1.86340 1.67261 1.21040 1.47177 1.20088 0.95709 0.85194 0.94814 1.23151 0.99506 0.90666 1.01163 1.67545 1.21402 1.10409 1.17837 1.23057 0.94664 1.01625 0.90613 1.22219 0.97960 0.91991 1.01278 1.19865 0.99951 0.95365 0.96047 1.19430 0.82788 0.97186 0.93916 1.45739 1.09900 1.59647 1.24351 1.18608 0.85170 0.77391 0.84299 1.90551 1.83803 1.52482 1.25083 1.21403 0.94910 1.36978 1.07444 0.89749 1.26970 1.04936 0.92221 0.94421 1.70204 1.34638 1.25654 1.14655 0.84972 0.75160 0.78897 0.79233 1.17092 1.19155 1.19269 0.93865 0.91419 0.91336 0.92870 0.91191 0.93811 0.89671 0.91261 0.90151 0.89284 0.80200 0.79285 0.82684 0.93346 0.94635 0.77748 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.33 127.69 1.19 1.63 16 2 N -0.57 -14.29 4.97 -948.86 -4.71 -19.01 16 3 C 0.03 0.65 9.57 127.69 1.22 1.88 16 4 C 0.06 1.21 5.34 86.30 0.46 1.67 16 5 C 0.05 1.10 4.81 71.98 0.35 1.45 16 6 O -0.31 -9.65 9.45 -92.56 -0.87 -10.52 16 7 C 0.09 2.72 6.68 22.60 0.15 2.87 16 8 C 0.01 0.32 10.22 84.82 0.87 1.19 16 9 N -0.46 -11.63 10.35 -195.44 -2.02 -13.66 16 10 C 0.06 1.31 11.18 84.68 0.95 2.25 16 11 C -0.11 -3.01 9.78 22.34 0.22 -2.79 16 12 C -0.10 -3.40 5.30 -19.58 -0.10 -3.51 16 13 C 0.19 8.21 5.54 85.63 0.47 8.68 16 14 N -0.74 -35.90 5.54 -471.14 -2.61 -38.51 16 15 C 0.54 32.81 7.75 86.36 0.67 33.48 16 16 O -0.63 -44.08 15.02 -4.32 -0.06 -44.15 16 17 C -0.57 -33.41 9.54 24.83 0.24 -33.17 16 18 H 0.08 4.47 7.85 -2.91 -0.02 4.44 16 19 C 0.03 1.68 5.50 85.30 0.47 2.15 16 20 N -0.82 -51.46 11.83 21.84 0.26 -51.20 16 21 Si 1.00 41.71 29.56 68.60 2.03 43.74 16 22 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 23 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 24 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 25 H 0.04 0.62 8.14 -2.38 -0.02 0.61 16 26 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 27 H 0.07 1.24 6.37 -2.39 -0.02 1.22 16 28 H 0.05 1.40 8.12 -2.39 -0.02 1.38 16 29 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.27 8.12 -2.39 -0.02 1.25 16 32 H 0.07 1.78 8.06 -2.39 -0.02 1.76 16 33 H 0.08 1.37 5.87 -2.39 -0.01 1.35 16 34 H 0.09 1.44 7.68 -2.39 -0.02 1.42 16 35 H 0.18 3.24 6.32 -2.91 -0.02 3.22 16 36 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.05 2.13 8.04 -2.39 -0.02 2.11 16 39 H 0.04 1.73 7.93 -2.39 -0.02 1.71 16 40 H 0.39 16.93 8.44 -92.71 -0.78 16.15 16 41 H 0.27 15.46 8.29 -92.71 -0.77 14.70 16 Total: -1.00 -82.52 348.32 -0.59 -83.11 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: 0.26 Total: 32.41 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 7.15 Total: 17.78 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -9.09 Total: -122.37 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -0.94 Total: -54.67 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -82.52 -0.59 -83.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494770205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.622 kcal (2) G-P(sol) polarization free energy of solvation -82.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds