Wall clock time and date at job start Tue Mar 31 2020 03:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47444 * 2 1 4 4 H 1.09007 * 109.47377 * 54.99684 * 3 2 1 5 5 C 1.50700 * 109.47422 * 174.99939 * 3 2 1 6 6 H 1.07996 * 120.00570 * 120.00250 * 5 3 2 7 7 C 1.37885 * 119.99569 * 299.99995 * 5 3 2 8 8 N 1.31515 * 119.99749 * 179.97438 * 7 5 3 9 9 Si 1.86792 * 120.00244 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47021 * 89.99957 * 9 7 5 11 11 H 1.48497 * 109.47178 * 209.99829 * 9 7 5 12 12 H 1.48499 * 109.47370 * 329.99927 * 9 7 5 13 13 N 1.46499 * 109.47067 * 294.99914 * 3 2 1 14 14 C 1.34777 * 120.00007 * 85.00275 * 13 3 2 15 15 O 1.21285 * 120.00129 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99757 * 179.97438 * 14 13 3 17 17 H 1.09000 * 107.91034 * 296.60638 * 16 14 13 18 18 C 1.51014 * 108.05356 * 53.18045 * 16 14 13 19 19 C 1.53722 * 110.86410 * 193.87245 * 18 16 14 20 20 C 1.51802 * 106.92751 * 280.97369 * 19 18 16 21 21 N 1.30313 * 127.91586 * 245.58839 * 20 19 18 22 22 N 1.29266 * 107.46386 * 180.02562 * 21 20 19 23 23 N 1.29154 * 109.43069 * 359.97438 * 22 21 20 24 24 N 1.28389 * 108.35820 * 0.02562 * 23 22 21 25 25 C 1.47651 * 127.74596 * 179.97438 * 24 23 22 26 26 C 1.50880 * 108.05135 * 179.97438 * 16 14 13 27 27 H 1.09001 * 109.46950 * 300.00285 * 1 2 3 28 28 H 1.09003 * 109.46294 * 59.99855 * 1 2 3 29 29 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46950 * 239.99715 * 2 1 3 31 31 H 1.09008 * 109.46728 * 120.00170 * 2 1 3 32 32 H 0.97000 * 120.00519 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00061 * 264.99561 * 13 3 2 34 34 H 1.08994 * 109.19625 * 314.23152 * 18 16 14 35 35 H 1.09003 * 109.19360 * 73.55922 * 18 16 14 36 36 H 1.08997 * 109.94590 * 161.62623 * 19 18 16 37 37 H 1.09008 * 109.98206 * 40.33807 * 19 18 16 38 38 H 1.08999 * 109.92086 * 233.64378 * 25 24 23 39 39 H 1.09004 * 109.91828 * 354.82387 * 25 24 23 40 40 H 1.09006 * 109.12889 * 45.27429 * 26 16 14 41 41 H 1.08998 * 109.08495 * 286.14224 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1474 1.8887 -0.6522 7 6 4.1433 0.8782 1.2281 8 7 5.4540 0.8793 1.3360 9 14 3.0963 0.1100 2.5708 10 1 2.8744 -1.3261 2.2646 11 1 3.7941 0.2359 3.8755 12 1 1.7881 0.8094 2.6396 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3394 2.6320 -0.4344 16 6 0.0370 3.3387 -2.6545 17 1 0.7058 4.1850 -2.8106 18 6 0.2530 2.3582 -3.7826 19 6 0.2006 3.0699 -5.1441 20 6 -1.2655 3.2832 -5.4752 21 7 -1.9521 2.7534 -6.4479 22 7 -3.1598 3.2062 -6.3617 23 7 -3.2465 4.0097 -5.3542 24 7 -2.0953 4.0764 -4.7899 25 6 -1.7147 4.8688 -3.6036 26 6 -1.3640 3.8736 -2.4882 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 5.8771 0.4809 2.1126 33 1 2.2721 2.1230 -1.9977 34 1 1.2269 1.8836 -3.6634 35 1 -0.5243 1.5948 -3.7477 36 1 0.6677 2.4474 -5.9073 37 1 0.7117 4.0307 -5.0822 38 1 -0.8486 5.4893 -3.8337 39 1 -2.5501 5.4961 -3.2925 40 1 -1.4424 4.3759 -1.5239 41 1 -2.0685 3.0424 -2.5160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519699894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:03 Heat of formation + Delta-G solvation = 75.523288 kcal Electronic energy + Delta-G solvation = -24325.988118 eV Core-core repulsion = 20857.548022 eV Total energy + Delta-G solvation = -3468.440096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.47941 -40.10713 -37.48776 -35.48534 -35.16771 -32.87302 -32.47342 -31.77976 -31.21546 -28.06634 -27.10576 -25.20151 -23.80390 -22.93132 -22.20185 -21.32476 -20.43154 -19.65001 -18.09959 -17.58548 -17.03207 -16.23957 -15.90800 -15.57223 -15.29358 -14.78746 -14.36476 -14.10228 -13.85308 -13.52365 -13.20877 -13.15111 -12.76640 -12.46950 -12.28721 -12.18899 -12.07162 -11.91267 -11.87126 -11.47967 -11.24638 -11.15626 -11.06705 -10.99109 -10.96646 -10.71302 -10.18629 -10.02225 -9.65572 -9.33608 -9.22090 -8.84936 -8.21804 -6.30118 -4.33411 1.13391 1.79548 2.09160 2.98322 3.16560 3.29019 3.32375 3.56756 3.63921 3.95492 4.16178 4.23028 4.36912 4.45343 4.66758 4.71450 4.75419 4.91598 5.03467 5.07541 5.22020 5.31762 5.41916 5.50255 5.56815 5.60173 5.79580 5.84970 5.87566 5.92940 6.03812 6.07693 6.54647 6.60014 6.73287 6.83776 7.12632 7.18030 7.39979 8.01150 8.38591 8.46676 8.64192 8.76697 9.30342 10.81769 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032134 B = 0.003789 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.130607 B = 7387.698117 C = 7563.494491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.049 0.951 5 C -0.538 4.538 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.697 5.697 14 C 0.504 3.496 15 O -0.547 6.547 16 C -0.117 4.117 17 H 0.100 0.900 18 C -0.116 4.116 19 C -0.035 4.035 20 C 0.183 3.817 21 N -0.303 5.303 22 N -0.088 5.088 23 N -0.096 5.096 24 N -0.301 5.301 25 C 0.115 3.885 26 C -0.120 4.120 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.268 0.732 33 H 0.395 0.605 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.144 7.190 -10.002 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.067 0.933 5 C -0.576 4.576 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.345 5.345 14 C 0.289 3.711 15 O -0.426 6.426 16 C -0.138 4.138 17 H 0.118 0.882 18 C -0.155 4.155 19 C -0.076 4.076 20 C -0.095 4.095 21 N -0.152 5.152 22 N -0.081 5.081 23 N -0.081 5.081 24 N -0.104 5.104 25 C -0.006 4.006 26 C -0.158 4.158 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.229 0.771 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.714 6.911 -9.952 16.174 hybrid contribution 0.627 -0.286 1.041 1.248 sum -10.087 6.626 -8.912 15.002 Atomic orbital electron populations 1.21873 0.96994 0.99096 1.02109 1.22291 0.94271 0.99968 1.01211 1.19162 0.95677 0.88490 0.82740 0.93308 1.21026 0.88536 1.40086 1.07914 0.90174 1.24832 0.94851 0.95077 0.97672 1.69858 1.08692 1.44272 1.29859 0.86911 0.80899 0.80000 0.80967 1.20216 1.22122 1.18531 1.46206 1.14712 1.55566 1.18028 1.20248 0.82711 0.79400 0.88776 1.90687 1.51447 1.59836 1.40648 1.20763 0.98214 0.99916 0.94925 0.88206 1.21449 1.04949 0.97961 0.91154 1.20766 0.84315 1.03488 0.99004 1.26050 0.98616 0.93587 0.91272 1.74957 0.99147 1.21906 1.19201 1.78855 1.11561 1.06927 1.10760 1.78838 1.05423 1.17749 1.06124 1.48687 1.06705 1.31595 1.23438 1.22917 1.03610 0.93643 0.80399 1.21533 0.96324 0.99390 0.98568 0.92900 0.93078 0.94964 0.92260 0.92734 0.92199 0.77119 0.88450 0.90581 0.86711 0.88140 0.86928 0.86161 0.86811 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.52 37.16 0.32 -2.38 16 2 C -0.14 -2.87 5.11 -26.73 -0.14 -3.00 16 3 C 0.24 5.22 1.83 -69.09 -0.13 5.09 16 4 H 0.05 1.18 6.63 -51.92 -0.34 0.84 16 5 C -0.54 -13.51 9.31 -34.44 -0.32 -13.83 16 6 H 0.08 2.11 7.98 -52.49 -0.42 1.69 16 7 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 8 N -0.89 -25.28 13.96 55.43 0.77 -24.51 16 9 Si 0.88 20.83 24.41 -169.99 -4.15 16.68 16 10 H -0.28 -6.34 6.83 56.52 0.39 -5.95 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.26 -6.08 6.53 56.52 0.37 -5.71 16 13 N -0.70 -11.52 4.75 -54.93 -0.26 -11.78 16 14 C 0.50 7.47 5.69 -10.98 -0.06 7.41 16 15 O -0.55 -10.09 12.67 5.55 0.07 -10.01 16 16 C -0.12 -1.08 1.98 -93.83 -0.19 -1.26 16 17 H 0.10 0.67 7.68 -51.93 -0.40 0.27 16 18 C -0.12 -0.97 4.89 -27.35 -0.13 -1.10 16 19 C -0.04 -0.24 6.00 -26.96 -0.16 -0.40 16 20 C 0.18 1.94 7.10 -156.72 -1.11 0.82 16 21 N -0.30 -4.20 12.37 32.63 0.40 -3.79 16 22 N -0.09 -1.32 13.45 60.32 0.81 -0.50 16 23 N -0.10 -1.26 13.36 60.35 0.81 -0.46 16 24 N -0.30 -3.08 3.36 -57.29 -0.19 -3.27 16 25 C 0.11 0.74 6.73 -3.13 -0.02 0.71 16 26 C -0.12 -1.04 4.47 -27.51 -0.12 -1.16 16 27 H 0.05 1.06 7.85 -51.93 -0.41 0.65 16 28 H 0.05 0.92 5.64 -51.93 -0.29 0.63 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 1.21 3.22 -51.92 -0.17 1.04 16 32 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.39 5.55 7.32 -40.82 -0.30 5.26 16 34 H 0.10 0.76 6.60 -51.93 -0.34 0.42 16 35 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 36 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.43 7.89 -51.92 -0.41 0.02 16 38 H 0.11 0.41 7.87 -51.93 -0.41 0.00 16 39 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.11 1.05 7.41 -51.93 -0.38 0.66 16 41 H 0.08 0.88 8.08 -51.93 -0.42 0.47 16 LS Contribution 318.86 15.07 4.81 4.81 Total: -1.00 -33.05 318.86 -4.68 -37.73 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.58 Total: 2.20 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -2.17 Total: -7.07 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 2.34 Total: -44.33 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.15 Total: 16.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.05 -4.68 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519699894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.254 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds