Wall clock time and date at job start Tue Mar 31 2020 03:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47444 * 2 1 4 4 H 1.09007 * 109.47377 * 54.99684 * 3 2 1 5 5 C 1.50700 * 109.47422 * 174.99939 * 3 2 1 6 6 H 1.07996 * 120.00570 * 120.00250 * 5 3 2 7 7 C 1.37885 * 119.99569 * 299.99995 * 5 3 2 8 8 N 1.31515 * 119.99749 * 179.97438 * 7 5 3 9 9 Si 1.86792 * 120.00244 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47021 * 89.99957 * 9 7 5 11 11 H 1.48497 * 109.47178 * 209.99829 * 9 7 5 12 12 H 1.48499 * 109.47370 * 329.99927 * 9 7 5 13 13 N 1.46499 * 109.47067 * 294.99914 * 3 2 1 14 14 C 1.34777 * 120.00007 * 85.00275 * 13 3 2 15 15 O 1.21285 * 120.00129 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99757 * 179.97438 * 14 13 3 17 17 H 1.09000 * 107.91034 * 296.60638 * 16 14 13 18 18 C 1.51014 * 108.05356 * 53.18045 * 16 14 13 19 19 C 1.53722 * 110.86410 * 193.87245 * 18 16 14 20 20 C 1.51802 * 106.92751 * 280.97369 * 19 18 16 21 21 N 1.30313 * 127.91586 * 245.58839 * 20 19 18 22 22 N 1.29266 * 107.46386 * 180.02562 * 21 20 19 23 23 N 1.29154 * 109.43069 * 359.97438 * 22 21 20 24 24 N 1.28389 * 108.35820 * 0.02562 * 23 22 21 25 25 C 1.47651 * 127.74596 * 179.97438 * 24 23 22 26 26 C 1.50880 * 108.05135 * 179.97438 * 16 14 13 27 27 H 1.09001 * 109.46950 * 300.00285 * 1 2 3 28 28 H 1.09003 * 109.46294 * 59.99855 * 1 2 3 29 29 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46950 * 239.99715 * 2 1 3 31 31 H 1.09008 * 109.46728 * 120.00170 * 2 1 3 32 32 H 0.97000 * 120.00519 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00061 * 264.99561 * 13 3 2 34 34 H 1.08994 * 109.19625 * 314.23152 * 18 16 14 35 35 H 1.09003 * 109.19360 * 73.55922 * 18 16 14 36 36 H 1.08997 * 109.94590 * 161.62623 * 19 18 16 37 37 H 1.09008 * 109.98206 * 40.33807 * 19 18 16 38 38 H 1.08999 * 109.92086 * 233.64378 * 25 24 23 39 39 H 1.09004 * 109.91828 * 354.82387 * 25 24 23 40 40 H 1.09006 * 109.12889 * 45.27429 * 26 16 14 41 41 H 1.08998 * 109.08495 * 286.14224 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1474 1.8887 -0.6522 7 6 4.1433 0.8782 1.2281 8 7 5.4540 0.8793 1.3360 9 14 3.0963 0.1100 2.5708 10 1 2.8744 -1.3261 2.2646 11 1 3.7941 0.2359 3.8755 12 1 1.7881 0.8094 2.6396 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3394 2.6320 -0.4344 16 6 0.0370 3.3387 -2.6545 17 1 0.7058 4.1850 -2.8106 18 6 0.2530 2.3582 -3.7826 19 6 0.2006 3.0699 -5.1441 20 6 -1.2655 3.2832 -5.4752 21 7 -1.9521 2.7534 -6.4479 22 7 -3.1598 3.2062 -6.3617 23 7 -3.2465 4.0097 -5.3542 24 7 -2.0953 4.0764 -4.7899 25 6 -1.7147 4.8688 -3.6036 26 6 -1.3640 3.8736 -2.4882 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 5.8771 0.4809 2.1126 33 1 2.2721 2.1230 -1.9977 34 1 1.2269 1.8836 -3.6634 35 1 -0.5243 1.5948 -3.7477 36 1 0.6677 2.4474 -5.9073 37 1 0.7117 4.0307 -5.0822 38 1 -0.8486 5.4893 -3.8337 39 1 -2.5501 5.4961 -3.2925 40 1 -1.4424 4.3759 -1.5239 41 1 -2.0685 3.0424 -2.5160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519699894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:03 Heat of formation + Delta-G solvation = 50.731967 kcal Electronic energy + Delta-G solvation = -24327.063150 eV Core-core repulsion = 20857.548022 eV Total energy + Delta-G solvation = -3469.515128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.34562 -41.26139 -38.45819 -37.00234 -35.97953 -34.37913 -33.77098 -33.02082 -32.18448 -29.56247 -28.16497 -25.98717 -24.74493 -24.57333 -23.34197 -22.07237 -21.77478 -20.90498 -19.21472 -18.68739 -18.02579 -17.73544 -17.29814 -16.48300 -16.46509 -16.10047 -15.30360 -15.20878 -15.01033 -14.77193 -14.50111 -14.09932 -13.95932 -13.72621 -13.60268 -13.43344 -13.05984 -12.99354 -12.88772 -12.76597 -12.74309 -12.38436 -12.28856 -11.98420 -11.87937 -11.79786 -11.73468 -11.37221 -11.20341 -11.04744 -10.84211 -10.49412 -9.70754 -8.36128 -6.40406 0.29750 1.11841 1.17513 1.27561 1.36320 1.44268 1.83054 2.26747 2.44534 2.96294 3.00502 3.30319 3.48252 3.55170 3.76484 3.99427 4.07293 4.17227 4.22556 4.23726 4.32290 4.38860 4.42905 4.47641 4.55587 4.77787 4.85174 4.85790 4.88327 4.96068 5.01272 5.10918 5.14042 5.16105 5.23014 5.34478 5.44504 5.52570 5.72016 6.17218 6.63431 6.95396 7.23440 7.54513 7.55769 8.78716 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032134 B = 0.003789 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.130607 B = 7387.698117 C = 7563.494491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.022 0.978 5 C -0.528 4.528 6 H 0.063 0.937 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.931 3.069 10 H -0.265 1.265 11 H -0.297 1.297 12 H -0.261 1.261 13 N -0.698 5.698 14 C 0.502 3.498 15 O -0.584 6.584 16 C -0.103 4.103 17 H 0.142 0.858 18 C -0.112 4.112 19 C -0.027 4.027 20 C 0.189 3.811 21 N -0.335 5.335 22 N -0.123 5.123 23 N -0.110 5.110 24 N -0.295 5.295 25 C 0.114 3.886 26 C -0.113 4.113 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.268 0.732 33 H 0.408 0.592 34 H 0.107 0.893 35 H 0.052 0.948 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.156 0.844 39 H 0.136 0.864 40 H 0.110 0.890 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.268 8.244 -10.962 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.177 4.177 3 C 0.145 3.855 4 H 0.040 0.960 5 C -0.566 4.566 6 H 0.081 0.919 7 C -0.168 4.168 8 N -0.572 5.572 9 Si 0.760 3.240 10 H -0.191 1.191 11 H -0.225 1.225 12 H -0.185 1.185 13 N -0.347 5.347 14 C 0.289 3.711 15 O -0.465 6.465 16 C -0.124 4.124 17 H 0.159 0.841 18 C -0.151 4.151 19 C -0.067 4.067 20 C -0.090 4.090 21 N -0.184 5.184 22 N -0.116 5.116 23 N -0.096 5.096 24 N -0.099 5.099 25 C -0.004 4.004 26 C -0.152 4.152 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.245 0.755 34 H 0.125 0.875 35 H 0.071 0.929 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.174 0.826 39 H 0.155 0.845 40 H 0.129 0.871 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.854 7.977 -10.941 17.353 hybrid contribution 0.677 -0.560 1.357 1.617 sum -10.177 7.416 -9.584 15.825 Atomic orbital electron populations 1.21753 0.95506 1.00202 1.01544 1.22221 0.95514 0.98995 1.00930 1.18718 0.93062 0.89344 0.84367 0.96025 1.21314 0.90426 1.38118 1.06750 0.91925 1.25486 0.95538 0.96036 0.99790 1.69963 1.10166 1.46276 1.30809 0.86119 0.79425 0.79831 0.78672 1.19130 1.22452 1.18519 1.46005 1.16015 1.55922 1.16775 1.21196 0.81294 0.78319 0.90286 1.90680 1.52269 1.60923 1.42655 1.20807 0.99191 1.00787 0.91589 0.84052 1.21399 1.04650 0.97340 0.91663 1.21007 0.82065 1.05667 0.97923 1.26678 0.99795 0.92378 0.90135 1.74867 0.99260 1.23128 1.21175 1.78821 1.12583 1.08196 1.12036 1.78747 1.06884 1.17789 1.06177 1.48963 1.05811 1.31401 1.23683 1.23285 1.06050 0.92822 0.78270 1.21433 0.95273 0.99031 0.99491 0.94589 0.92510 0.92978 0.91214 0.94271 0.92228 0.75507 0.87451 0.92885 0.85431 0.84111 0.82643 0.84547 0.87132 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 8.52 71.98 0.61 -4.19 16 2 C -0.14 -5.52 5.11 30.59 0.16 -5.36 16 3 C 0.25 10.57 1.83 44.24 0.08 10.65 16 4 H 0.02 1.05 6.63 -2.38 -0.02 1.04 16 5 C -0.53 -26.41 9.31 25.60 0.24 -26.17 16 6 H 0.06 3.29 7.98 -2.91 -0.02 3.27 16 7 C 0.03 1.68 5.45 84.66 0.46 2.14 16 8 N -0.93 -53.61 13.96 21.45 0.30 -53.31 16 9 Si 0.93 43.08 24.41 68.60 1.67 44.75 16 10 H -0.27 -11.72 6.83 99.48 0.68 -11.04 16 11 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.26 -11.92 6.53 99.48 0.65 -11.27 16 13 N -0.70 -21.75 4.75 -446.09 -2.12 -23.87 16 14 C 0.50 13.80 5.69 87.66 0.50 14.30 16 15 O -0.58 -20.94 12.67 -3.05 -0.04 -20.98 16 16 C -0.10 -1.53 1.98 -12.87 -0.03 -1.55 16 17 H 0.14 1.04 7.68 -2.39 -0.02 1.02 16 18 C -0.11 -1.47 4.89 30.19 0.15 -1.32 16 19 C -0.03 -0.25 6.00 30.44 0.18 -0.06 16 20 C 0.19 3.49 7.10 139.13 0.99 4.48 16 21 N -0.34 -8.93 12.37 -50.67 -0.63 -9.56 16 22 N -0.12 -3.66 13.45 36.91 0.50 -3.16 16 23 N -0.11 -2.78 13.36 37.02 0.49 -2.29 16 24 N -0.30 -5.28 3.36 -335.16 -1.13 -6.41 16 25 C 0.11 1.02 6.73 86.34 0.58 1.60 16 26 C -0.11 -1.67 4.47 30.09 0.13 -1.53 16 27 H 0.03 1.40 7.85 -2.39 -0.02 1.39 16 28 H 0.06 1.96 5.64 -2.39 -0.01 1.95 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.04 1.69 3.22 -2.38 -0.01 1.68 16 32 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.41 10.44 7.32 -92.71 -0.68 9.76 16 34 H 0.11 1.26 6.60 -2.39 -0.02 1.25 16 35 H 0.05 0.97 7.91 -2.39 -0.02 0.96 16 36 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.14 0.25 7.89 -2.38 -0.02 0.23 16 38 H 0.16 0.14 7.87 -2.39 -0.02 0.12 16 39 H 0.14 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.11 1.77 7.41 -2.38 -0.02 1.76 16 41 H 0.05 1.09 8.08 -2.39 -0.02 1.07 16 Total: -1.00 -75.25 318.86 3.41 -71.84 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.30 Total: 10.00 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 4.06 Total: -7.03 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -2.58 Total: -98.59 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.04 Total: -20.98 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.67 Total: 44.75 kcal Total: -75.25 3.41 -71.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519699894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.574 kcal (2) G-P(sol) polarization free energy of solvation -75.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds