Wall clock time and date at job start Tue Mar 31 2020 03:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46605 * 2 1 4 4 H 1.08991 * 109.47156 * 305.69187 * 3 2 1 5 5 C 1.50702 * 109.46905 * 185.69598 * 3 2 1 6 6 H 1.07999 * 120.00054 * 275.01131 * 5 3 2 7 7 C 1.37877 * 120.00227 * 95.00020 * 5 3 2 8 8 N 1.31511 * 120.00368 * 184.82896 * 7 5 3 9 9 Si 1.86802 * 119.99738 * 4.83473 * 7 5 3 10 10 H 1.48503 * 109.47219 * 84.85699 * 9 7 5 11 11 H 1.48501 * 109.47229 * 204.85564 * 9 7 5 12 12 H 1.48499 * 109.47096 * 324.85906 * 9 7 5 13 13 N 1.46500 * 109.46996 * 65.69912 * 3 2 1 14 14 C 1.34774 * 119.99662 * 274.99209 * 13 3 2 15 15 O 1.21275 * 120.00313 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99849 * 180.02562 * 14 13 3 17 17 H 1.08998 * 107.91077 * 63.38991 * 16 14 13 18 18 C 1.51007 * 108.05463 * 180.02562 * 16 14 13 19 19 C 1.53682 * 110.87264 * 193.87622 * 18 16 14 20 20 C 1.51807 * 106.94090 * 280.97312 * 19 18 16 21 21 N 1.30310 * 127.91669 * 245.57922 * 20 19 18 22 22 N 1.29273 * 107.46311 * 179.97438 * 21 20 19 23 23 N 1.29147 * 109.42871 * 0.02562 * 22 21 20 24 24 N 1.28401 * 108.35920 * 0.02562 * 23 22 21 25 25 C 1.47650 * 127.74142 * 179.97438 * 24 23 22 26 26 C 1.50883 * 108.05027 * 306.81555 * 16 14 13 27 27 H 1.09001 * 109.46982 * 299.99644 * 1 2 3 28 28 H 1.08999 * 109.47821 * 59.99789 * 1 2 3 29 29 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46982 * 240.00356 * 2 1 3 31 31 H 1.08999 * 109.47555 * 119.99729 * 2 1 3 32 32 H 0.97000 * 120.00070 * 180.02562 * 8 7 5 33 33 H 0.96995 * 119.99906 * 95.00193 * 13 3 2 34 34 H 1.08999 * 109.19838 * 314.23541 * 18 16 14 35 35 H 1.08998 * 109.19865 * 73.56222 * 18 16 14 36 36 H 1.08991 * 109.95616 * 40.33449 * 19 18 16 37 37 H 1.09004 * 109.95473 * 161.52816 * 19 18 16 38 38 H 1.09004 * 109.91945 * 233.63492 * 25 24 23 39 39 H 1.08999 * 109.92086 * 354.81191 * 25 24 23 40 40 H 1.08992 * 109.12932 * 286.17610 * 26 16 14 41 41 H 1.08997 * 109.13102 * 45.28531 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5957 1.9849 -0.8346 5 6 3.5403 1.4450 -0.1410 6 1 4.1650 1.3334 0.7329 7 6 4.1155 1.5895 -1.3857 8 7 5.4203 1.4967 -1.5219 9 14 3.0416 1.9172 -2.8786 10 1 2.7751 3.3742 -2.9864 11 1 3.7399 1.4499 -4.1030 12 1 1.7560 1.1884 -2.7331 13 7 1.6667 2.0924 1.2588 14 6 0.4508 2.6588 1.3902 15 8 -0.3345 2.6302 0.4665 16 6 0.0671 3.3278 2.6849 17 1 0.7376 4.1736 2.8369 18 6 -1.3369 3.8638 2.5367 19 6 -1.6706 4.8461 3.6705 20 6 -2.0097 4.0121 4.8928 21 7 -3.1564 3.9175 5.5046 22 7 -3.0019 3.0999 6.4940 23 7 -1.7811 2.6790 6.5168 24 7 -1.1469 3.2248 5.5429 25 6 0.2711 3.0437 5.1734 26 6 0.2957 2.3435 3.8054 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.8250 1.5987 -2.3976 33 1 2.2947 2.1151 1.9977 34 1 -1.4251 4.3778 1.5795 35 1 -2.0423 3.0333 2.5636 36 1 -0.8086 5.4794 3.8796 37 1 -2.5251 5.4618 3.3897 38 1 0.7638 4.0136 5.1046 39 1 0.7723 2.4235 5.9166 40 1 -0.4850 1.5835 3.7781 41 1 1.2647 1.8640 3.6674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519699898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:06 Heat of formation + Delta-G solvation = 66.911017 kcal Electronic energy + Delta-G solvation = -24313.346507 eV Core-core repulsion = 20844.532955 eV Total energy + Delta-G solvation = -3468.813552 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.46960 -40.05643 -37.45254 -35.52723 -34.86262 -33.16509 -32.37062 -31.53784 -31.27978 -28.06499 -27.08638 -25.20071 -23.78879 -23.02431 -22.13107 -21.31173 -20.12981 -19.65673 -18.08465 -17.59176 -17.06641 -16.33782 -15.83140 -15.66532 -15.07120 -14.60704 -14.38448 -14.04539 -13.93407 -13.47393 -13.32807 -12.90641 -12.74186 -12.50351 -12.28578 -12.07672 -12.04806 -11.93277 -11.81486 -11.46773 -11.17348 -11.06265 -11.04128 -11.02832 -10.79163 -10.76933 -10.13537 -10.11525 -9.94824 -9.33292 -9.22663 -8.80960 -8.17129 -6.34391 -4.38972 1.14123 1.79019 2.10514 3.01480 3.17499 3.26443 3.32835 3.62405 3.68563 3.95625 4.18714 4.22302 4.24359 4.47645 4.68908 4.77500 4.80544 4.93995 5.04384 5.07825 5.20656 5.34248 5.38294 5.49821 5.60298 5.65040 5.83634 5.93135 5.96927 5.97781 6.09388 6.13538 6.52359 6.67454 6.84265 6.87880 7.15559 7.22056 7.43300 7.98925 8.40978 8.47548 8.64751 8.79601 9.27376 10.77087 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029490 B = 0.003879 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.252789 B = 7216.012669 C = 7348.317434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.237 3.763 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.078 0.922 7 C 0.083 3.917 8 N -0.887 5.887 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.702 5.702 14 C 0.501 3.499 15 O -0.546 6.546 16 C -0.118 4.118 17 H 0.099 0.901 18 C -0.102 4.102 19 C -0.038 4.038 20 C 0.186 3.814 21 N -0.304 5.304 22 N -0.087 5.087 23 N -0.096 5.096 24 N -0.303 5.303 25 C 0.116 3.884 26 C -0.132 4.132 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.269 0.731 33 H 0.391 0.609 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.797 5.481 10.746 14.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.134 3.866 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.096 0.904 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.184 1.184 13 N -0.350 5.350 14 C 0.285 3.715 15 O -0.425 6.425 16 C -0.139 4.139 17 H 0.117 0.883 18 C -0.141 4.141 19 C -0.078 4.078 20 C -0.092 4.092 21 N -0.153 5.153 22 N -0.081 5.081 23 N -0.081 5.081 24 N -0.106 5.106 25 C -0.004 4.004 26 C -0.171 4.171 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.225 0.775 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.101 0.899 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.022 4.929 10.954 15.023 hybrid contribution 0.721 0.319 -1.046 1.311 sum -8.301 5.249 9.907 13.950 Atomic orbital electron populations 1.21904 0.97438 0.98904 1.01942 1.22078 0.93594 0.99460 1.01275 1.19181 0.95538 0.89080 0.82752 0.93057 1.20985 0.88619 1.52089 0.95459 0.90382 1.24935 0.94859 0.93598 0.98823 1.69873 1.09789 1.47976 1.24622 0.86914 0.81266 0.79616 0.82281 1.19851 1.21159 1.18368 1.46671 1.14305 1.55764 1.18266 1.20313 0.82882 0.79447 0.88815 1.90681 1.50772 1.59640 1.41418 1.20788 0.99321 0.99391 0.94413 0.88254 1.21209 0.94983 0.99200 0.98737 1.20797 1.04258 0.95719 0.87021 1.26095 0.86566 0.97223 0.99362 1.74959 1.20052 1.15589 1.04726 1.78852 1.07378 1.08048 1.13785 1.78841 1.02265 1.18637 1.08391 1.48643 1.13335 1.29423 1.19167 1.22899 0.74371 1.04559 0.98585 1.21779 1.05667 0.98549 0.91087 0.93322 0.93063 0.95103 0.92056 0.93063 0.92139 0.77476 0.87969 0.90826 0.88387 0.86931 0.86713 0.85997 0.89937 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.53 37.16 0.32 -2.36 16 2 C -0.12 -2.50 5.59 -26.73 -0.15 -2.65 16 3 C 0.24 5.04 1.89 -69.08 -0.13 4.91 16 4 H 0.05 1.22 4.73 -51.93 -0.25 0.97 16 5 C -0.53 -13.20 9.05 -34.44 -0.31 -13.51 16 6 H 0.08 2.03 8.06 -52.49 -0.42 1.61 16 7 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 8 N -0.89 -24.85 13.96 55.43 0.77 -24.08 16 9 Si 0.87 20.43 26.99 -169.99 -4.59 15.85 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.26 -5.99 6.82 56.52 0.39 -5.60 16 13 N -0.70 -11.62 4.76 -54.93 -0.26 -11.88 16 14 C 0.50 7.60 5.73 -10.98 -0.06 7.53 16 15 O -0.55 -10.36 12.69 5.56 0.07 -10.29 16 16 C -0.12 -1.13 1.98 -93.83 -0.19 -1.31 16 17 H 0.10 0.71 7.68 -51.93 -0.40 0.31 16 18 C -0.10 -0.99 4.41 -27.38 -0.12 -1.11 16 19 C -0.04 -0.28 6.00 -26.98 -0.16 -0.44 16 20 C 0.19 2.02 7.10 -156.73 -1.11 0.91 16 21 N -0.30 -4.29 12.37 32.63 0.40 -3.88 16 22 N -0.09 -1.32 13.45 60.32 0.81 -0.51 16 23 N -0.10 -1.27 13.36 60.35 0.81 -0.46 16 24 N -0.30 -3.10 3.36 -57.21 -0.19 -3.30 16 25 C 0.12 0.72 6.73 -3.05 -0.02 0.69 16 26 C -0.13 -1.04 4.95 -27.43 -0.14 -1.18 16 27 H 0.05 0.88 5.63 -51.93 -0.29 0.58 16 28 H 0.05 1.02 7.89 -51.93 -0.41 0.61 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.39 5.44 7.37 -40.82 -0.30 5.14 16 34 H 0.10 1.08 7.44 -51.93 -0.39 0.70 16 35 H 0.07 0.86 7.91 -51.93 -0.41 0.45 16 36 H 0.10 0.49 7.89 -51.93 -0.41 0.08 16 37 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 0.40 7.88 -51.93 -0.41 -0.01 16 39 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 41 H 0.11 0.75 6.58 -51.93 -0.34 0.41 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -32.77 325.56 -5.15 -37.92 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.71 Total: 2.15 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.17 Total: -6.44 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 2.34 Total: -44.10 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.59 Total: 15.85 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.77 -5.15 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519699898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.836 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds