Wall clock time and date at job start Tue Mar 31 2020 03:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46605 * 2 1 4 4 H 1.08991 * 109.47156 * 305.69187 * 3 2 1 5 5 C 1.50702 * 109.46905 * 185.69598 * 3 2 1 6 6 H 1.07999 * 120.00054 * 275.01131 * 5 3 2 7 7 C 1.37877 * 120.00227 * 95.00020 * 5 3 2 8 8 N 1.31511 * 120.00368 * 184.82896 * 7 5 3 9 9 Si 1.86802 * 119.99738 * 4.83473 * 7 5 3 10 10 H 1.48503 * 109.47219 * 84.85699 * 9 7 5 11 11 H 1.48501 * 109.47229 * 204.85564 * 9 7 5 12 12 H 1.48499 * 109.47096 * 324.85906 * 9 7 5 13 13 N 1.46500 * 109.46996 * 65.69912 * 3 2 1 14 14 C 1.34774 * 119.99662 * 274.99209 * 13 3 2 15 15 O 1.21275 * 120.00313 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99849 * 180.02562 * 14 13 3 17 17 H 1.08998 * 107.91077 * 63.38991 * 16 14 13 18 18 C 1.51007 * 108.05463 * 180.02562 * 16 14 13 19 19 C 1.53682 * 110.87264 * 193.87622 * 18 16 14 20 20 C 1.51807 * 106.94090 * 280.97312 * 19 18 16 21 21 N 1.30310 * 127.91669 * 245.57922 * 20 19 18 22 22 N 1.29273 * 107.46311 * 179.97438 * 21 20 19 23 23 N 1.29147 * 109.42871 * 0.02562 * 22 21 20 24 24 N 1.28401 * 108.35920 * 0.02562 * 23 22 21 25 25 C 1.47650 * 127.74142 * 179.97438 * 24 23 22 26 26 C 1.50883 * 108.05027 * 306.81555 * 16 14 13 27 27 H 1.09001 * 109.46982 * 299.99644 * 1 2 3 28 28 H 1.08999 * 109.47821 * 59.99789 * 1 2 3 29 29 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46982 * 240.00356 * 2 1 3 31 31 H 1.08999 * 109.47555 * 119.99729 * 2 1 3 32 32 H 0.97000 * 120.00070 * 180.02562 * 8 7 5 33 33 H 0.96995 * 119.99906 * 95.00193 * 13 3 2 34 34 H 1.08999 * 109.19838 * 314.23541 * 18 16 14 35 35 H 1.08998 * 109.19865 * 73.56222 * 18 16 14 36 36 H 1.08991 * 109.95616 * 40.33449 * 19 18 16 37 37 H 1.09004 * 109.95473 * 161.52816 * 19 18 16 38 38 H 1.09004 * 109.91945 * 233.63492 * 25 24 23 39 39 H 1.08999 * 109.92086 * 354.81191 * 25 24 23 40 40 H 1.08992 * 109.12932 * 286.17610 * 26 16 14 41 41 H 1.08997 * 109.13102 * 45.28531 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5957 1.9849 -0.8346 5 6 3.5403 1.4450 -0.1410 6 1 4.1650 1.3334 0.7329 7 6 4.1155 1.5895 -1.3857 8 7 5.4203 1.4967 -1.5219 9 14 3.0416 1.9172 -2.8786 10 1 2.7751 3.3742 -2.9864 11 1 3.7399 1.4499 -4.1030 12 1 1.7560 1.1884 -2.7331 13 7 1.6667 2.0924 1.2588 14 6 0.4508 2.6588 1.3902 15 8 -0.3345 2.6302 0.4665 16 6 0.0671 3.3278 2.6849 17 1 0.7376 4.1736 2.8369 18 6 -1.3369 3.8638 2.5367 19 6 -1.6706 4.8461 3.6705 20 6 -2.0097 4.0121 4.8928 21 7 -3.1564 3.9175 5.5046 22 7 -3.0019 3.0999 6.4940 23 7 -1.7811 2.6790 6.5168 24 7 -1.1469 3.2248 5.5429 25 6 0.2711 3.0437 5.1734 26 6 0.2957 2.3435 3.8054 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 5.8250 1.5987 -2.3976 33 1 2.2947 2.1151 1.9977 34 1 -1.4251 4.3778 1.5795 35 1 -2.0423 3.0333 2.5636 36 1 -0.8086 5.4794 3.8796 37 1 -2.5251 5.4618 3.3897 38 1 0.7638 4.0136 5.1046 39 1 0.7723 2.4235 5.9166 40 1 -0.4850 1.5835 3.7781 41 1 1.2647 1.8640 3.6674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519699898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:05 Heat of formation + Delta-G solvation = 43.117198 kcal Electronic energy + Delta-G solvation = -24314.378284 eV Core-core repulsion = 20844.532955 eV Total energy + Delta-G solvation = -3469.845329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.34741 -41.22780 -38.41859 -36.94975 -35.80847 -34.46023 -33.95363 -32.72626 -32.23082 -29.56431 -28.14756 -25.98901 -24.82818 -24.58277 -23.19205 -22.10783 -21.49223 -20.94036 -19.27960 -18.70799 -18.02971 -17.73895 -17.26099 -16.54905 -16.27394 -16.01334 -15.29544 -15.12056 -14.94118 -14.77089 -14.49521 -14.09758 -13.90324 -13.79234 -13.63251 -13.40519 -13.07076 -12.93154 -12.81430 -12.78882 -12.53564 -12.37180 -12.25505 -11.98145 -11.87808 -11.83792 -11.79796 -11.66308 -11.17852 -11.01457 -10.81648 -10.49422 -9.64785 -8.37045 -6.41955 0.29199 1.11839 1.17059 1.29629 1.35775 1.44829 1.84925 2.28136 2.45783 2.95808 3.04399 3.29636 3.48708 3.53403 3.76438 3.98935 4.11448 4.19422 4.23505 4.31377 4.37271 4.41482 4.43059 4.49858 4.59408 4.73918 4.82090 4.85062 4.87870 4.95828 5.09861 5.11075 5.21523 5.25171 5.28609 5.36282 5.45003 5.55685 5.83068 6.16038 6.64839 6.98664 7.24973 7.55416 7.56885 8.77658 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029490 B = 0.003879 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.252789 B = 7216.012669 C = 7348.317434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.242 3.758 4 H 0.029 0.971 5 C -0.522 4.522 6 H 0.061 0.939 7 C 0.035 3.965 8 N -0.930 5.930 9 Si 0.921 3.079 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.259 1.259 13 N -0.701 5.701 14 C 0.498 3.502 15 O -0.585 6.585 16 C -0.104 4.104 17 H 0.141 0.859 18 C -0.097 4.097 19 C -0.027 4.027 20 C 0.190 3.810 21 N -0.336 5.336 22 N -0.123 5.123 23 N -0.107 5.107 24 N -0.295 5.295 25 C 0.112 3.888 26 C -0.127 4.127 27 H 0.052 0.948 28 H 0.031 0.969 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.269 0.731 33 H 0.407 0.593 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.139 0.861 37 H 0.122 0.878 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.059 0.941 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.721 6.643 11.886 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.162 4.162 3 C 0.138 3.862 4 H 0.047 0.953 5 C -0.560 4.560 6 H 0.079 0.921 7 C -0.165 4.165 8 N -0.569 5.569 9 Si 0.746 3.254 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.183 1.183 13 N -0.351 5.351 14 C 0.286 3.714 15 O -0.466 6.466 16 C -0.125 4.125 17 H 0.158 0.842 18 C -0.136 4.136 19 C -0.067 4.067 20 C -0.089 4.089 21 N -0.186 5.186 22 N -0.116 5.116 23 N -0.093 5.093 24 N -0.098 5.098 25 C -0.006 4.006 26 C -0.165 4.165 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.243 0.757 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.157 0.843 37 H 0.140 0.860 38 H 0.174 0.826 39 H 0.160 0.840 40 H 0.077 0.923 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.948 6.095 12.126 16.256 hybrid contribution 0.711 -0.071 -1.383 1.556 sum -8.237 6.025 10.743 14.818 Atomic orbital electron populations 1.21766 0.96131 0.99962 1.01155 1.21996 0.94644 0.98477 1.01127 1.18831 0.93081 0.89978 0.84314 0.95332 1.21225 0.90360 1.49965 0.94487 0.92107 1.25541 0.95544 0.94186 1.01237 1.69969 1.11202 1.50554 1.25149 0.86146 0.79911 0.79329 0.79975 1.19791 1.20989 1.18280 1.46336 1.15580 1.56059 1.17117 1.21223 0.81496 0.78377 0.90339 1.90675 1.51682 1.60803 1.43467 1.20817 0.99900 1.00417 0.91362 0.84188 1.21107 0.94379 0.98778 0.99325 1.20961 1.06379 0.94941 0.84394 1.26596 0.85863 0.96889 0.99526 1.74868 1.22026 1.16331 1.05338 1.78820 1.08445 1.09336 1.15030 1.78743 1.02076 1.18943 1.09547 1.48957 1.14455 1.28321 1.18084 1.23351 0.72496 1.07125 0.97601 1.21724 1.05565 0.97724 0.91530 0.92947 0.94973 0.93083 0.93657 0.91791 0.92187 0.75695 0.88784 0.93544 0.84324 0.85957 0.82601 0.83998 0.92258 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 8.53 71.98 0.61 -4.15 16 2 C -0.12 -4.80 5.59 30.60 0.17 -4.63 16 3 C 0.24 10.08 1.89 44.25 0.08 10.16 16 4 H 0.03 1.34 4.73 -2.39 -0.01 1.33 16 5 C -0.52 -25.65 9.05 25.60 0.23 -25.41 16 6 H 0.06 3.15 8.06 -2.91 -0.02 3.13 16 7 C 0.04 1.87 5.47 84.66 0.46 2.33 16 8 N -0.93 -52.71 13.96 21.45 0.30 -52.41 16 9 Si 0.92 42.36 26.99 68.60 1.85 44.21 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.26 -11.72 6.82 99.48 0.68 -11.04 16 13 N -0.70 -21.74 4.76 -446.09 -2.12 -23.86 16 14 C 0.50 14.00 5.73 87.66 0.50 14.51 16 15 O -0.59 -21.58 12.69 -3.01 -0.04 -21.62 16 16 C -0.10 -1.61 1.98 -12.88 -0.03 -1.64 16 17 H 0.14 1.15 7.68 -2.39 -0.02 1.13 16 18 C -0.10 -1.62 4.41 30.17 0.13 -1.49 16 19 C -0.03 -0.30 6.00 30.43 0.18 -0.12 16 20 C 0.19 3.66 7.10 139.13 0.99 4.65 16 21 N -0.34 -9.17 12.37 -50.67 -0.63 -9.80 16 22 N -0.12 -3.67 13.45 36.91 0.50 -3.17 16 23 N -0.11 -2.67 13.36 37.02 0.49 -2.18 16 24 N -0.29 -5.20 3.36 -334.91 -1.13 -6.32 16 25 C 0.11 0.86 6.73 86.39 0.58 1.45 16 26 C -0.13 -1.54 4.95 30.14 0.15 -1.39 16 27 H 0.05 1.82 5.63 -2.39 -0.01 1.80 16 28 H 0.03 1.25 7.89 -2.39 -0.02 1.24 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.41 10.13 7.37 -92.71 -0.68 9.45 16 34 H 0.09 1.80 7.44 -2.39 -0.02 1.78 16 35 H 0.05 1.04 7.91 -2.39 -0.02 1.02 16 36 H 0.14 0.51 7.89 -2.39 -0.02 0.49 16 37 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.16 0.02 7.88 -2.38 -0.02 0.00 16 39 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 41 H 0.12 1.20 6.58 -2.39 -0.02 1.18 16 Total: -1.00 -74.59 325.56 3.65 -70.94 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.35 Total: 9.94 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 4.07 Total: -5.73 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -2.58 Total: -97.75 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.04 Total: -21.62 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.85 Total: 44.21 kcal Total: -74.59 3.65 -70.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519699898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.061 kcal (2) G-P(sol) polarization free energy of solvation -74.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds