Wall clock time and date at job start Tue Mar 31 2020 03:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.09002 * 107.91505 * 63.38797 * 16 14 13 18 18 C 1.51015 * 108.05459 * 306.81136 * 16 14 13 19 19 C 1.53712 * 110.86298 * 166.13133 * 18 16 14 20 20 C 1.51804 * 106.93784 * 79.02030 * 19 18 16 21 21 N 1.30309 * 127.91253 * 114.41200 * 20 19 18 22 22 N 1.29264 * 107.46805 * 179.97438 * 21 20 19 23 23 N 1.29146 * 109.43076 * 0.02562 * 22 21 20 24 24 N 1.28396 * 108.35783 * 359.97438 * 23 22 21 25 25 C 1.47657 * 127.75512 * 180.02562 * 24 23 22 26 26 C 1.50884 * 108.05543 * 179.97438 * 16 14 13 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 34 34 H 1.09000 * 109.19972 * 286.49315 * 18 16 14 35 35 H 1.08996 * 109.19853 * 45.77890 * 18 16 14 36 36 H 1.08998 * 109.96583 * 319.65919 * 19 18 16 37 37 H 1.08991 * 110.02308 * 198.41234 * 19 18 16 38 38 H 1.08998 * 109.91804 * 126.34335 * 25 24 23 39 39 H 1.08999 * 109.98693 * 5.20246 * 25 24 23 40 40 H 1.08996 * 109.12601 * 314.73863 * 26 16 14 41 41 H 1.09001 * 109.12837 * 73.83813 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.0177 2.5811 -3.4377 18 6 1.1050 4.3468 -3.0049 19 6 0.9518 4.8239 -4.4580 20 6 -0.1651 5.8520 -4.4704 21 7 -0.0791 7.1244 -4.7384 22 7 -1.2668 7.6239 -4.6341 23 7 -2.0977 6.6916 -4.3053 24 7 -1.4473 5.5897 -4.1978 25 6 -1.9771 4.2582 -3.8420 26 6 -1.3644 3.8736 -2.4879 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8293 -0.0605 2.9501 33 1 2.2718 2.1232 -1.9978 34 1 1.0231 5.2033 -2.3357 35 1 2.0857 3.8878 -2.8799 36 1 0.6905 3.9829 -5.1003 37 1 1.8806 5.2794 -4.8012 38 1 -1.6896 3.5295 -4.5999 39 1 -3.0632 4.2992 -3.7597 40 1 -1.9848 3.1100 -2.0187 41 1 -1.3367 4.7540 -1.8459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519699900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:08 Heat of formation + Delta-G solvation = 67.319264 kcal Electronic energy + Delta-G solvation = -24177.424643 eV Core-core repulsion = 20708.628794 eV Total energy + Delta-G solvation = -3468.795849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.43163 -39.92691 -37.35140 -35.22256 -35.09411 -32.79635 -32.44592 -31.55404 -30.80936 -27.82794 -26.72913 -25.13493 -23.75494 -23.23397 -21.94785 -21.26904 -20.07406 -19.41700 -18.01787 -17.47950 -16.95175 -15.90346 -15.75095 -15.51228 -14.95742 -14.72958 -14.28989 -14.05620 -13.60356 -13.50131 -13.20761 -12.79457 -12.66384 -12.28111 -12.18190 -12.03226 -11.87087 -11.61936 -11.39311 -11.33382 -11.12705 -11.09277 -11.00410 -10.91405 -10.88691 -10.41583 -10.27049 -10.11581 -9.73813 -9.16917 -9.08741 -8.58379 -7.96309 -6.20390 -4.30558 1.18145 1.84402 2.13796 3.15150 3.20006 3.26264 3.26763 3.68155 3.73512 4.00651 4.22762 4.26023 4.48684 4.53552 4.72891 4.79691 4.83538 4.97082 5.11381 5.14080 5.27505 5.41701 5.49540 5.58297 5.63537 5.68514 5.90101 5.94700 6.09463 6.27992 6.33076 6.54123 6.91310 7.08003 7.24416 7.31650 7.51109 7.61892 7.79654 8.08651 8.51252 8.51753 8.67039 8.97380 9.37146 10.84779 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.024356 B = 0.003855 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.345271 B = 7260.682831 C = 8074.093809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.705 5.705 14 C 0.502 3.498 15 O -0.546 6.546 16 C -0.117 4.117 17 H 0.096 0.904 18 C -0.116 4.116 19 C -0.035 4.035 20 C 0.184 3.816 21 N -0.304 5.304 22 N -0.088 5.088 23 N -0.096 5.096 24 N -0.301 5.301 25 C 0.115 3.885 26 C -0.119 4.119 27 H 0.049 0.951 28 H 0.022 0.978 29 H 0.037 0.963 30 H 0.099 0.901 31 H 0.031 0.969 32 H 0.266 0.734 33 H 0.388 0.612 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 2.420 -13.412 15.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.353 5.353 14 C 0.286 3.714 15 O -0.425 6.425 16 C -0.138 4.138 17 H 0.114 0.886 18 C -0.155 4.155 19 C -0.076 4.076 20 C -0.095 4.095 21 N -0.153 5.153 22 N -0.081 5.081 23 N -0.082 5.082 24 N -0.104 5.104 25 C -0.006 4.006 26 C -0.158 4.158 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.221 0.779 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.543 3.589 -12.685 15.188 hybrid contribution 1.474 -0.984 -0.054 1.773 sum -6.069 2.604 -12.739 14.349 Atomic orbital electron populations 1.21835 0.98399 0.98052 1.01095 1.21939 0.92552 0.99831 1.02357 1.18795 0.94251 0.89152 0.80904 0.93333 1.21173 0.90642 1.39350 1.06398 0.92127 1.24877 0.98626 0.94715 0.95354 1.69875 1.35301 1.37380 1.09307 0.86523 0.84790 0.78375 0.77519 1.20148 1.21118 1.20126 1.46535 1.14489 1.55655 1.18573 1.20176 0.83036 0.79461 0.88716 1.90689 1.51393 1.60110 1.40306 1.20765 0.95305 0.99002 0.98773 0.88625 1.21438 0.99668 0.99670 0.94683 1.20765 0.94088 0.94117 0.98592 1.26048 0.87923 0.95179 1.00320 1.74949 1.15960 1.04842 1.19510 1.78846 0.94046 1.20483 1.14754 1.78832 1.22374 0.89294 1.17655 1.48686 1.06974 1.10545 1.44203 1.22906 1.01877 0.76795 0.98975 1.21524 0.95795 1.04181 0.94305 0.93165 0.95843 0.94413 0.88271 0.95018 0.92438 0.77913 0.90540 0.88460 0.88288 0.86796 0.87049 0.86212 0.86867 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.51 37.16 0.32 -2.45 16 2 C -0.13 -2.87 5.45 -26.73 -0.15 -3.02 16 3 C 0.27 6.22 2.24 -69.08 -0.15 6.07 16 4 H 0.05 1.33 7.58 -51.93 -0.39 0.93 16 5 C -0.54 -13.23 8.73 -34.44 -0.30 -13.53 16 6 H 0.06 1.41 7.74 -52.49 -0.41 1.01 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.68 11.29 55.43 0.63 -23.05 16 9 Si 0.90 19.73 29.54 -169.99 -5.02 14.70 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 13 N -0.70 -12.36 4.75 -54.93 -0.26 -12.62 16 14 C 0.50 8.04 5.69 -10.99 -0.06 7.98 16 15 O -0.55 -10.92 12.68 5.56 0.07 -10.85 16 16 C -0.12 -1.18 1.98 -93.83 -0.19 -1.37 16 17 H 0.10 0.70 7.68 -51.93 -0.40 0.30 16 18 C -0.12 -1.08 4.89 -27.36 -0.13 -1.21 16 19 C -0.04 -0.26 6.00 -26.97 -0.16 -0.42 16 20 C 0.18 2.06 7.10 -156.73 -1.11 0.94 16 21 N -0.30 -4.38 12.37 32.63 0.40 -3.98 16 22 N -0.09 -1.37 13.45 60.32 0.81 -0.55 16 23 N -0.10 -1.32 13.36 60.35 0.81 -0.51 16 24 N -0.30 -3.26 3.36 -57.30 -0.19 -3.46 16 25 C 0.11 0.81 6.73 -3.14 -0.02 0.78 16 26 C -0.12 -1.15 4.47 -27.52 -0.12 -1.27 16 27 H 0.05 1.11 7.85 -51.93 -0.41 0.70 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.71 5.65 -51.93 -0.29 0.42 16 30 H 0.10 2.52 5.95 -51.93 -0.31 2.21 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.39 5.69 7.32 -40.82 -0.30 5.40 16 34 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 35 H 0.10 0.86 6.60 -51.93 -0.34 0.52 16 36 H 0.10 0.46 7.89 -51.93 -0.41 0.05 16 37 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 0.45 7.87 -51.93 -0.41 0.05 16 39 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 1.14 7.41 -51.93 -0.38 0.76 16 41 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -31.91 325.63 -5.74 -37.65 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.71 Total: 3.62 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.18 Total: -5.86 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 2.19 Total: -44.17 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.85 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.91 -5.74 -37.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519699900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.966 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds