Wall clock time and date at job start Tue Mar 31 2020 03:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.09002 * 107.91505 * 63.38797 * 16 14 13 18 18 C 1.51015 * 108.05459 * 306.81136 * 16 14 13 19 19 C 1.53712 * 110.86298 * 166.13133 * 18 16 14 20 20 C 1.51804 * 106.93784 * 79.02030 * 19 18 16 21 21 N 1.30309 * 127.91253 * 114.41200 * 20 19 18 22 22 N 1.29264 * 107.46805 * 179.97438 * 21 20 19 23 23 N 1.29146 * 109.43076 * 0.02562 * 22 21 20 24 24 N 1.28396 * 108.35783 * 359.97438 * 23 22 21 25 25 C 1.47657 * 127.75512 * 180.02562 * 24 23 22 26 26 C 1.50884 * 108.05543 * 179.97438 * 16 14 13 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 34 34 H 1.09000 * 109.19972 * 286.49315 * 18 16 14 35 35 H 1.08996 * 109.19853 * 45.77890 * 18 16 14 36 36 H 1.08998 * 109.96583 * 319.65919 * 19 18 16 37 37 H 1.08991 * 110.02308 * 198.41234 * 19 18 16 38 38 H 1.08998 * 109.91804 * 126.34335 * 25 24 23 39 39 H 1.08999 * 109.98693 * 5.20246 * 25 24 23 40 40 H 1.08996 * 109.12601 * 314.73863 * 26 16 14 41 41 H 1.09001 * 109.12837 * 73.83813 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.0177 2.5811 -3.4377 18 6 1.1050 4.3468 -3.0049 19 6 0.9518 4.8239 -4.4580 20 6 -0.1651 5.8520 -4.4704 21 7 -0.0791 7.1244 -4.7384 22 7 -1.2668 7.6239 -4.6341 23 7 -2.0977 6.6916 -4.3053 24 7 -1.4473 5.5897 -4.1978 25 6 -1.9771 4.2582 -3.8420 26 6 -1.3644 3.8736 -2.4879 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8293 -0.0605 2.9501 33 1 2.2718 2.1232 -1.9978 34 1 1.0231 5.2033 -2.3357 35 1 2.0857 3.8878 -2.8799 36 1 0.6905 3.9829 -5.1003 37 1 1.8806 5.2794 -4.8012 38 1 -1.6896 3.5295 -4.5999 39 1 -3.0632 4.2992 -3.7597 40 1 -1.9848 3.1100 -2.0187 41 1 -1.3367 4.7540 -1.8459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519699900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:07 Heat of formation + Delta-G solvation = 44.546279 kcal Electronic energy + Delta-G solvation = -24178.412154 eV Core-core repulsion = 20708.628794 eV Total energy + Delta-G solvation = -3469.783360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.34806 -41.15967 -38.38781 -36.83848 -35.97827 -34.28540 -33.65999 -32.73883 -32.09593 -29.19514 -28.01872 -25.99039 -25.00479 -24.65987 -23.09419 -22.05941 -21.54646 -20.80622 -19.08028 -18.64965 -17.96418 -17.38439 -17.20289 -16.51888 -16.26234 -16.06290 -15.34638 -15.06357 -14.72926 -14.60849 -14.52139 -14.03632 -13.69571 -13.54296 -13.30655 -13.14454 -13.05431 -12.92214 -12.85275 -12.76389 -12.62546 -12.29641 -12.15531 -12.03513 -11.98076 -11.80407 -11.72954 -11.52099 -11.05472 -11.00877 -10.54807 -10.39953 -9.55368 -8.13626 -6.30375 0.29369 1.11739 1.17339 1.47017 1.48060 1.55298 1.90680 2.37547 2.62706 2.96353 3.16558 3.30410 3.49182 3.60268 3.77461 4.01476 4.07976 4.17486 4.22344 4.42339 4.44632 4.52812 4.54820 4.63120 4.77849 4.81869 4.85804 4.86472 4.96492 5.11757 5.13084 5.16893 5.32389 5.34689 5.48802 5.61111 5.68522 5.85334 5.97980 6.22496 6.79490 7.06424 7.37922 7.55291 7.67410 8.91032 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.024356 B = 0.003855 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.345271 B = 7260.682831 C = 8074.093809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.279 3.721 4 H -0.007 1.007 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.964 3.036 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.262 1.262 13 N -0.702 5.702 14 C 0.496 3.504 15 O -0.591 6.591 16 C -0.101 4.101 17 H 0.146 0.854 18 C -0.111 4.111 19 C -0.025 4.025 20 C 0.188 3.812 21 N -0.336 5.336 22 N -0.123 5.123 23 N -0.110 5.110 24 N -0.295 5.295 25 C 0.115 3.885 26 C -0.114 4.114 27 H 0.020 0.980 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.406 0.594 34 H 0.045 0.955 35 H 0.107 0.893 36 H 0.145 0.855 37 H 0.128 0.872 38 H 0.159 0.841 39 H 0.136 0.864 40 H 0.110 0.890 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 1.233 -16.511 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.011 0.989 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.790 3.210 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.187 1.187 13 N -0.351 5.351 14 C 0.284 3.716 15 O -0.472 6.472 16 C -0.122 4.122 17 H 0.163 0.837 18 C -0.150 4.150 19 C -0.065 4.065 20 C -0.090 4.090 21 N -0.185 5.185 22 N -0.116 5.116 23 N -0.096 5.096 24 N -0.099 5.099 25 C -0.003 4.003 26 C -0.153 4.153 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.242 0.758 34 H 0.064 0.936 35 H 0.125 0.875 36 H 0.163 0.837 37 H 0.146 0.854 38 H 0.177 0.823 39 H 0.155 0.845 40 H 0.128 0.872 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.907 2.413 -15.830 17.439 hybrid contribution 1.235 -0.628 0.987 1.701 sum -5.672 1.785 -14.843 15.990 Atomic orbital electron populations 1.21675 0.96824 0.99064 1.00410 1.21775 0.93882 0.99153 1.01262 1.18294 0.93327 0.89190 0.81701 0.98937 1.21596 0.91704 1.38556 1.06548 0.90729 1.25724 1.02885 0.94596 0.95229 1.70045 1.36989 1.38552 1.09864 0.85514 0.79698 0.78331 0.77495 1.19885 1.21719 1.18657 1.46245 1.15755 1.55828 1.17307 1.21232 0.81700 0.78364 0.90347 1.90683 1.52544 1.61382 1.42593 1.20796 0.95377 0.99854 0.96183 0.83673 1.21384 0.99736 0.98272 0.95633 1.21006 0.93443 0.94469 0.97539 1.26701 0.88788 0.94916 0.98620 1.74857 1.15943 1.06731 1.20971 1.78810 0.94771 1.21673 1.16390 1.78740 1.22857 0.90124 1.17901 1.48967 1.06909 1.10865 1.43146 1.23277 1.02785 0.75806 0.98426 1.21425 0.95793 1.02577 0.95497 0.96081 0.93842 0.92813 0.91620 0.93674 0.92811 0.75839 0.93646 0.87498 0.83735 0.85422 0.82314 0.84549 0.87200 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 8.51 71.98 0.61 -4.33 16 2 C -0.12 -5.48 5.45 30.59 0.17 -5.31 16 3 C 0.28 12.99 2.24 44.24 0.10 13.09 16 4 H -0.01 -0.42 7.58 -2.38 -0.02 -0.44 16 5 C -0.55 -26.77 8.73 25.60 0.22 -26.55 16 6 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 7 C 0.02 0.81 5.29 84.66 0.45 1.26 16 8 N -0.92 -50.72 11.29 21.45 0.24 -50.47 16 9 Si 0.96 40.27 29.54 68.60 2.03 42.29 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 13 N -0.70 -23.66 4.75 -446.09 -2.12 -25.78 16 14 C 0.50 15.25 5.69 87.66 0.50 15.75 16 15 O -0.59 -23.94 12.68 -3.03 -0.04 -23.98 16 16 C -0.10 -1.70 1.98 -12.88 -0.03 -1.72 16 17 H 0.15 1.13 7.68 -2.39 -0.02 1.11 16 18 C -0.11 -1.72 4.89 30.19 0.15 -1.57 16 19 C -0.02 -0.25 6.00 30.44 0.18 -0.07 16 20 C 0.19 3.73 7.10 139.13 0.99 4.72 16 21 N -0.34 -9.39 12.37 -50.67 -0.63 -10.01 16 22 N -0.12 -3.82 13.45 36.91 0.50 -3.32 16 23 N -0.11 -2.93 13.36 37.02 0.49 -2.43 16 24 N -0.30 -5.67 3.36 -335.19 -1.13 -6.80 16 25 C 0.12 1.16 6.73 86.33 0.58 1.74 16 26 C -0.11 -1.93 4.47 30.08 0.13 -1.79 16 27 H 0.02 0.93 7.85 -2.39 -0.02 0.91 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.96 5.65 -2.38 -0.01 1.95 16 30 H 0.07 3.43 5.95 -2.39 -0.01 3.42 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 33 H 0.41 10.72 7.32 -92.71 -0.68 10.04 16 34 H 0.04 1.00 7.92 -2.39 -0.02 0.98 16 35 H 0.11 1.50 6.60 -2.39 -0.02 1.49 16 36 H 0.14 0.27 7.89 -2.39 -0.02 0.25 16 37 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.16 0.19 7.87 -2.39 -0.02 0.18 16 39 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 2.00 7.41 -2.39 -0.02 1.99 16 41 H 0.05 1.12 8.08 -2.39 -0.02 1.10 16 Total: -1.00 -75.90 325.63 3.78 -72.11 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.38 Total: 13.19 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 4.06 Total: -4.79 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -2.64 Total: -98.83 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.04 Total: -23.98 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.29 kcal Total: -75.90 3.78 -72.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519699900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.659 kcal (2) G-P(sol) polarization free energy of solvation -75.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds