Wall clock time and date at job start Tue Mar 31 2020 03:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00381 * 2 1 4 4 H 1.48499 * 109.46986 * 270.00569 * 3 2 1 5 5 H 1.48500 * 109.46733 * 30.00282 * 3 2 1 6 6 H 1.48498 * 109.47311 * 150.00604 * 3 2 1 7 7 C 1.37882 * 119.99455 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99375 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00281 * 359.97438 * 7 2 1 10 10 C 1.53039 * 109.46065 * 180.02562 * 9 7 2 11 11 C 1.53188 * 109.31449 * 178.62699 * 10 9 7 12 12 N 1.46924 * 108.77594 * 54.62911 * 11 10 9 13 13 C 1.34783 * 120.63136 * 126.36953 * 12 11 10 14 14 O 1.21589 * 120.00030 * 185.22973 * 13 12 11 15 15 N 1.34779 * 119.99837 * 5.22549 * 13 12 11 16 16 C 1.46500 * 119.99715 * 175.01893 * 15 13 12 17 17 C 1.53000 * 109.46703 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.46703 * 179.97438 * 17 16 15 19 19 C 1.34432 * 126.82430 * 125.00124 * 18 17 16 20 20 N 1.30828 * 108.07782 * 179.97438 * 19 18 17 21 21 C 1.33240 * 109.83312 * 359.97438 * 20 19 18 22 22 N 1.30716 * 108.94230 * 0.26706 * 21 20 19 23 23 C 1.46926 * 118.73917 * 306.64610 * 12 11 10 24 24 C 1.52758 * 109.00953 * 53.31008 * 23 12 11 25 25 H 0.97004 * 119.99564 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.45707 * 299.97016 * 9 7 2 27 27 H 1.08998 * 109.50310 * 58.66951 * 10 9 7 28 28 H 1.09005 * 109.51694 * 298.59333 * 10 9 7 29 29 H 1.08995 * 109.58881 * 294.84643 * 11 10 9 30 30 H 1.09002 * 109.70271 * 174.48330 * 11 10 9 31 31 H 0.96999 * 120.00011 * 355.02213 * 15 13 12 32 32 H 1.08997 * 109.47438 * 60.00060 * 16 15 13 33 33 H 1.09007 * 109.46826 * 299.99670 * 16 15 13 34 34 H 1.08997 * 109.47505 * 59.99635 * 17 16 15 35 35 H 1.08997 * 109.46865 * 299.99049 * 17 16 15 36 36 H 1.07998 * 125.96099 * 0.02562 * 19 18 17 37 37 H 1.07995 * 125.53150 * 180.02562 * 21 20 19 38 38 H 1.08999 * 109.58648 * 173.14370 * 23 12 11 39 39 H 1.08996 * 109.58557 * 293.56623 * 23 12 11 40 40 H 1.08997 * 109.56600 * 185.55459 * 24 23 12 41 41 H 1.09004 * 109.36079 * 65.49965 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2456 -3.6623 -0.0005 11 6 1.4765 -4.9867 0.0341 12 7 0.5222 -5.0087 -1.0828 13 6 0.5119 -6.0344 -1.9571 14 8 -0.2161 -5.9964 -2.9302 15 7 1.3086 -7.1021 -1.7528 16 6 1.2191 -8.2635 -2.6412 17 6 2.2230 -9.3273 -2.1925 18 7 2.1330 -10.4890 -3.0805 19 6 3.1379 -11.0551 -3.7710 20 7 2.6499 -12.0663 -4.4425 21 6 1.3432 -12.1771 -4.2068 22 7 0.9789 -11.2301 -3.3827 23 6 -0.4166 -3.8884 -1.2321 24 6 0.3700 -2.5790 -1.2494 25 1 -0.4850 0.8401 0.0004 26 1 0.6251 -2.5571 0.8900 27 1 2.8881 -3.5916 0.8771 28 1 2.8559 -3.6195 -0.9026 29 1 0.9369 -5.0713 0.9773 30 1 2.1734 -5.8190 -0.0643 31 1 1.9413 -7.1015 -1.0175 32 1 1.4451 -7.9580 -3.6627 33 1 0.2107 -8.6756 -2.5998 34 1 1.9966 -9.6328 -1.1710 35 1 3.2314 -8.9155 -2.2335 36 1 4.1685 -10.7320 -3.7708 37 1 0.6902 -12.9253 -4.6311 38 1 -0.9669 -3.9948 -2.1669 39 1 -1.1137 -3.8817 -0.3941 40 1 -0.3225 -1.7373 -1.2605 41 1 0.9976 -2.5462 -2.1400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540994018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:46 Heat of formation + Delta-G solvation = 66.537944 kcal Electronic energy + Delta-G solvation = -23037.783112 eV Core-core repulsion = 19568.953383 eV Total energy + Delta-G solvation = -3468.829730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.37270 -40.06752 -37.22025 -35.92010 -33.86670 -33.35271 -31.53265 -31.13524 -30.35341 -28.86345 -26.19092 -24.28594 -23.03789 -22.35024 -22.23117 -21.67929 -20.36560 -19.06957 -17.82775 -17.53955 -16.49632 -16.35838 -15.81601 -15.45613 -15.15747 -14.69839 -14.60132 -14.32408 -14.11255 -13.74748 -13.28670 -12.98299 -12.83984 -12.62829 -12.53880 -12.21301 -11.87292 -11.74879 -11.16526 -10.96382 -10.69823 -10.48180 -10.37149 -10.15377 -10.10489 -10.06560 -9.87871 -9.60326 -9.24440 -9.16041 -8.94416 -8.40289 -7.97558 -6.04988 -4.11896 1.28365 1.81570 2.65468 2.92797 3.26488 3.33888 3.35774 3.44874 3.95265 3.99302 4.11554 4.32306 4.38438 4.57301 4.68536 4.87005 5.24673 5.26187 5.43665 5.56845 5.68685 5.77823 5.86711 5.98527 6.08569 6.20965 6.34573 6.37247 6.43341 6.48468 6.56018 6.72595 6.92214 7.04343 7.18835 7.41554 7.67340 7.73817 7.89256 8.02315 8.18555 8.36647 8.82601 8.91352 9.53370 11.00427 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.040899 B = 0.002612 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.445530 B =10717.779065 C =11007.357362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.616 5.616 13 C 0.707 3.293 14 O -0.596 6.596 15 N -0.753 5.753 16 C 0.132 3.868 17 C 0.120 3.880 18 N -0.377 5.377 19 C 0.258 3.742 20 N -0.548 5.548 21 C 0.198 3.802 22 N -0.313 5.313 23 C 0.126 3.874 24 C -0.124 4.124 25 H 0.261 0.739 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.396 0.604 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.220 0.780 37 H 0.218 0.782 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.905 -19.350 -1.837 20.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.353 5.353 13 C 0.409 3.591 14 O -0.474 6.474 15 N -0.414 5.414 16 C 0.006 3.994 17 C -0.003 4.003 18 N -0.168 5.168 19 C -0.039 4.039 20 N -0.275 5.275 21 C -0.105 4.105 22 N -0.141 5.141 23 C 0.004 3.996 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.232 0.768 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.237 0.763 37 H 0.234 0.766 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.638 -19.229 -2.438 19.931 hybrid contribution 1.071 1.110 0.448 1.606 sum 5.710 -18.120 -1.990 19.102 Atomic orbital electron populations 1.69842 1.05860 1.26537 1.50590 1.24970 0.94869 0.99098 0.95051 0.86615 0.79836 0.83559 0.78100 1.20728 1.21234 1.20001 1.21169 0.92840 0.90582 1.50657 0.92761 1.18621 0.92566 0.91530 0.94187 1.22014 0.98963 0.94307 1.00930 1.21725 0.91118 0.98909 0.89244 1.47463 1.38195 1.21288 1.28308 1.15768 0.80637 0.79830 0.82889 1.90894 1.45561 1.80888 1.30095 1.45041 1.43992 1.16991 1.35328 1.21198 0.99716 0.84172 0.94335 1.21927 1.01997 0.83011 0.93369 1.50370 1.06329 1.24375 1.35753 1.26143 0.96645 0.90915 0.90221 1.70559 1.10107 1.20275 1.26566 1.26062 0.91628 0.97417 0.95377 1.78125 1.06631 1.08543 1.20766 1.21708 0.90921 0.85574 1.01361 1.21958 1.00160 0.94947 0.99232 0.92906 0.95451 0.92090 0.92895 0.91797 0.92386 0.76779 0.91126 0.90274 0.88467 0.87248 0.76348 0.76595 0.90506 0.92443 0.87760 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.45 11.31 55.43 0.63 -23.83 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.51 -13.40 8.56 -34.44 -0.29 -13.69 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 10 C -0.12 -2.26 5.30 -26.61 -0.14 -2.40 16 11 C 0.11 1.67 6.39 -3.71 -0.02 1.65 16 12 N -0.62 -10.72 2.98 -178.77 -0.53 -11.25 16 13 C 0.71 12.20 8.30 -86.91 -0.72 11.48 16 14 O -0.60 -12.67 15.77 5.29 0.08 -12.58 16 15 N -0.75 -8.97 5.47 -65.22 -0.36 -9.33 16 16 C 0.13 1.39 5.89 -4.04 -0.02 1.37 16 17 C 0.12 0.77 6.66 -4.04 -0.03 0.74 16 18 N -0.38 -3.26 3.69 -62.63 -0.23 -3.49 16 19 C 0.26 1.94 12.63 -90.66 -1.14 0.79 16 20 N -0.55 -5.45 11.19 -15.83 -0.18 -5.63 16 21 C 0.20 1.90 13.03 -91.81 -1.20 0.70 16 22 N -0.31 -3.45 12.57 29.29 0.37 -3.08 16 23 C 0.13 2.50 6.41 -3.93 -0.03 2.47 16 24 C -0.12 -2.83 5.14 -26.84 -0.14 -2.97 16 25 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.63 5.64 -51.93 -0.29 0.33 16 31 H 0.40 3.51 5.96 -40.82 -0.24 3.27 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.36 8.09 -51.93 -0.42 -0.06 16 36 H 0.22 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.22 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.08 1.58 6.99 -51.93 -0.36 1.22 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.10 2.66 6.03 -51.93 -0.31 2.35 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -34.08 337.66 -10.00 -44.08 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.82 Total: 1.74 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -4.02 Total: 2.63 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.30 Total: -56.60 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.08 -10.00 -44.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540994018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.615 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds