Wall clock time and date at job start Tue Mar 31 2020 03:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00381 * 2 1 4 4 H 1.48499 * 109.46986 * 270.00569 * 3 2 1 5 5 H 1.48500 * 109.46733 * 30.00282 * 3 2 1 6 6 H 1.48498 * 109.47311 * 150.00604 * 3 2 1 7 7 C 1.37882 * 119.99455 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99375 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00281 * 359.97438 * 7 2 1 10 10 C 1.53039 * 109.46065 * 180.02562 * 9 7 2 11 11 C 1.53188 * 109.31449 * 178.62699 * 10 9 7 12 12 N 1.46924 * 108.77594 * 54.62911 * 11 10 9 13 13 C 1.34783 * 120.63136 * 126.36953 * 12 11 10 14 14 O 1.21589 * 120.00030 * 185.22973 * 13 12 11 15 15 N 1.34779 * 119.99837 * 5.22549 * 13 12 11 16 16 C 1.46500 * 119.99715 * 175.01893 * 15 13 12 17 17 C 1.53000 * 109.46703 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.46703 * 179.97438 * 17 16 15 19 19 C 1.34432 * 126.82430 * 125.00124 * 18 17 16 20 20 N 1.30828 * 108.07782 * 179.97438 * 19 18 17 21 21 C 1.33240 * 109.83312 * 359.97438 * 20 19 18 22 22 N 1.30716 * 108.94230 * 0.26706 * 21 20 19 23 23 C 1.46926 * 118.73917 * 306.64610 * 12 11 10 24 24 C 1.52758 * 109.00953 * 53.31008 * 23 12 11 25 25 H 0.97004 * 119.99564 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.45707 * 299.97016 * 9 7 2 27 27 H 1.08998 * 109.50310 * 58.66951 * 10 9 7 28 28 H 1.09005 * 109.51694 * 298.59333 * 10 9 7 29 29 H 1.08995 * 109.58881 * 294.84643 * 11 10 9 30 30 H 1.09002 * 109.70271 * 174.48330 * 11 10 9 31 31 H 0.96999 * 120.00011 * 355.02213 * 15 13 12 32 32 H 1.08997 * 109.47438 * 60.00060 * 16 15 13 33 33 H 1.09007 * 109.46826 * 299.99670 * 16 15 13 34 34 H 1.08997 * 109.47505 * 59.99635 * 17 16 15 35 35 H 1.08997 * 109.46865 * 299.99049 * 17 16 15 36 36 H 1.07998 * 125.96099 * 0.02562 * 19 18 17 37 37 H 1.07995 * 125.53150 * 180.02562 * 21 20 19 38 38 H 1.08999 * 109.58648 * 173.14370 * 23 12 11 39 39 H 1.08996 * 109.58557 * 293.56623 * 23 12 11 40 40 H 1.08997 * 109.56600 * 185.55459 * 24 23 12 41 41 H 1.09004 * 109.36079 * 65.49965 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2456 -3.6623 -0.0005 11 6 1.4765 -4.9867 0.0341 12 7 0.5222 -5.0087 -1.0828 13 6 0.5119 -6.0344 -1.9571 14 8 -0.2161 -5.9964 -2.9302 15 7 1.3086 -7.1021 -1.7528 16 6 1.2191 -8.2635 -2.6412 17 6 2.2230 -9.3273 -2.1925 18 7 2.1330 -10.4890 -3.0805 19 6 3.1379 -11.0551 -3.7710 20 7 2.6499 -12.0663 -4.4425 21 6 1.3432 -12.1771 -4.2068 22 7 0.9789 -11.2301 -3.3827 23 6 -0.4166 -3.8884 -1.2321 24 6 0.3700 -2.5790 -1.2494 25 1 -0.4850 0.8401 0.0004 26 1 0.6251 -2.5571 0.8900 27 1 2.8881 -3.5916 0.8771 28 1 2.8559 -3.6195 -0.9026 29 1 0.9369 -5.0713 0.9773 30 1 2.1734 -5.8190 -0.0643 31 1 1.9413 -7.1015 -1.0175 32 1 1.4451 -7.9580 -3.6627 33 1 0.2107 -8.6756 -2.5998 34 1 1.9966 -9.6328 -1.1710 35 1 3.2314 -8.9155 -2.2335 36 1 4.1685 -10.7320 -3.7708 37 1 0.6902 -12.9253 -4.6311 38 1 -0.9669 -3.9948 -2.1669 39 1 -1.1137 -3.8817 -0.3941 40 1 -0.3225 -1.7373 -1.2605 41 1 0.9976 -2.5462 -2.1400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540994018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:45 Heat of formation + Delta-G solvation = 44.988690 kcal Electronic energy + Delta-G solvation = -23038.717558 eV Core-core repulsion = 19568.953383 eV Total energy + Delta-G solvation = -3469.764175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.98628 -41.41977 -38.67460 -36.92669 -35.41860 -34.51481 -32.85887 -32.17806 -31.81547 -29.80359 -27.89641 -25.30881 -24.52297 -23.72825 -22.92359 -22.40694 -21.82009 -20.48811 -19.18411 -18.38651 -18.13257 -17.34990 -17.00209 -16.56359 -16.42588 -15.85677 -15.63993 -15.26085 -15.16872 -14.93065 -14.87042 -14.54867 -14.25319 -13.94301 -13.56887 -13.32055 -13.20249 -12.99799 -12.81091 -12.47261 -12.42969 -12.15292 -11.92749 -11.45555 -11.38249 -11.02257 -10.94077 -10.81967 -10.78588 -10.68345 -10.40337 -10.32481 -9.42057 -8.06791 -6.20448 0.68287 1.18704 1.41567 1.43649 1.52139 1.80962 2.02895 2.08849 2.44408 2.92537 3.20185 3.41486 3.55633 3.75007 4.04496 4.10093 4.19483 4.23120 4.28790 4.35892 4.49530 4.62188 4.68954 4.72605 4.78170 4.91784 4.99909 5.19817 5.22600 5.26472 5.35200 5.47275 5.48393 5.50471 5.66224 5.90693 5.98985 6.03377 6.13642 6.39516 6.91860 6.96008 7.12319 7.47838 7.50979 8.96568 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.040899 B = 0.002612 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.445530 B =10717.779065 C =11007.357362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.044 3.956 10 C -0.116 4.116 11 C 0.116 3.884 12 N -0.619 5.619 13 C 0.703 3.297 14 O -0.642 6.642 15 N -0.727 5.727 16 C 0.137 3.863 17 C 0.127 3.873 18 N -0.384 5.384 19 C 0.267 3.733 20 N -0.580 5.580 21 C 0.193 3.807 22 N -0.356 5.356 23 C 0.138 3.862 24 C -0.112 4.112 25 H 0.259 0.741 26 H 0.004 0.996 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.415 0.585 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.114 0.886 35 H 0.154 0.846 36 H 0.265 0.735 37 H 0.237 0.763 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.541 -20.813 -0.873 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.073 0.927 9 C 0.025 3.975 10 C -0.154 4.154 11 C -0.006 4.006 12 N -0.355 5.355 13 C 0.404 3.596 14 O -0.524 6.524 15 N -0.388 5.388 16 C 0.011 3.989 17 C 0.006 3.994 18 N -0.175 5.175 19 C -0.029 4.029 20 N -0.308 5.308 21 C -0.110 4.110 22 N -0.184 5.184 23 C 0.015 3.985 24 C -0.151 4.151 25 H 0.069 0.931 26 H 0.023 0.977 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.255 0.745 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.132 0.868 35 H 0.171 0.829 36 H 0.281 0.719 37 H 0.253 0.747 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 7.328 -20.725 -1.431 22.029 hybrid contribution 0.267 1.566 0.125 1.593 sum 7.595 -19.159 -1.306 20.651 Atomic orbital electron populations 1.69982 1.07085 1.27015 1.51530 1.25721 0.95632 1.02292 0.95091 0.85691 0.78956 0.79885 0.77913 1.20776 1.21189 1.18994 1.21603 0.93113 0.92123 1.49982 0.92750 1.18616 0.93199 0.92747 0.92889 1.21869 0.98072 0.94119 1.01378 1.21877 0.91202 0.98698 0.88778 1.47392 1.38298 1.20671 1.29168 1.15965 0.80836 0.80652 0.82114 1.90867 1.47623 1.81889 1.32027 1.44738 1.42751 1.15626 1.35674 1.21149 0.99864 0.84472 0.93411 1.22066 1.02788 0.81119 0.93477 1.50469 1.06012 1.24687 1.36309 1.27029 0.97927 0.89636 0.88273 1.70575 1.10374 1.21892 1.27933 1.26545 0.92072 0.97456 0.94898 1.78059 1.08559 1.09667 1.22082 1.21327 0.91015 0.85254 1.00894 1.21714 0.99407 0.95556 0.98466 0.93139 0.97745 0.90502 0.93458 0.90549 0.87284 0.74476 0.92959 0.93037 0.86797 0.82864 0.71948 0.74686 0.91826 0.92033 0.91055 0.96153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.67 11.31 21.45 0.24 -51.43 16 2 C 0.01 0.60 5.30 84.66 0.45 1.05 16 3 Si 0.95 42.58 29.54 68.60 2.03 44.60 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.53 -27.72 8.56 25.60 0.22 -27.50 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.04 2.03 2.07 -11.52 -0.02 2.01 16 10 C -0.12 -3.98 5.30 30.67 0.16 -3.82 16 11 C 0.12 3.04 6.39 86.36 0.55 3.59 16 12 N -0.62 -20.66 2.98 -837.76 -2.50 -23.15 16 13 C 0.70 23.30 8.30 179.05 1.49 24.79 16 14 O -0.64 -27.53 15.77 -4.00 -0.06 -27.59 16 15 N -0.73 -15.18 5.47 -478.52 -2.62 -17.80 16 16 C 0.14 2.64 5.89 86.38 0.51 3.15 16 17 C 0.13 1.16 6.66 86.38 0.58 1.73 16 18 N -0.38 -5.67 3.69 -352.07 -1.30 -6.97 16 19 C 0.27 3.21 12.63 180.36 2.28 5.49 16 20 N -0.58 -10.57 11.19 -204.01 -2.28 -12.86 16 21 C 0.19 3.55 13.03 180.76 2.36 5.90 16 22 N -0.36 -7.53 12.57 -61.25 -0.77 -8.30 16 23 C 0.14 5.56 6.41 86.22 0.55 6.12 16 24 C -0.11 -5.27 5.14 30.53 0.16 -5.11 16 25 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 26 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.11 1.75 5.64 -2.39 -0.01 1.73 16 31 H 0.42 5.30 5.96 -92.71 -0.55 4.74 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.15 0.09 8.09 -2.39 -0.02 0.07 16 36 H 0.27 0.26 8.06 -2.91 -0.02 0.23 16 37 H 0.24 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.06 2.71 6.99 -2.39 -0.02 2.70 16 39 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.07 3.81 6.03 -2.39 -0.01 3.80 16 41 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -78.47 337.66 2.50 -75.96 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.49 Total: 10.15 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 9.27 Total: 17.39 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -9.22 Total: -120.51 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.06 Total: -27.59 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -78.47 2.50 -75.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540994018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.953 kcal (2) G-P(sol) polarization free energy of solvation -78.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds