Wall clock time and date at job start Tue Mar 31 2020 03:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99994 * 2 1 4 4 C 1.52992 * 109.47155 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47149 * 65.00039 * 4 3 2 6 6 C 1.46503 * 119.99868 * 269.99650 * 5 4 3 7 7 C 1.50697 * 109.47298 * 269.99906 * 6 5 4 8 8 H 1.08002 * 120.00048 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99758 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00034 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99769 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47068 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46786 * 120.00158 * 11 9 7 14 14 H 1.48499 * 109.46896 * 240.00193 * 11 9 7 15 15 C 1.34777 * 120.00098 * 90.00276 * 5 4 3 16 16 O 1.21284 * 119.99577 * 359.97438 * 15 5 4 17 17 C 1.50694 * 120.00301 * 180.02562 * 15 5 4 18 18 C 1.52995 * 109.47301 * 179.97438 * 17 15 5 19 19 C 1.50699 * 109.47299 * 179.97438 * 18 17 15 20 20 C 1.38602 * 120.79596 * 90.00262 * 19 18 17 21 21 N 1.32331 * 119.10423 * 179.97438 * 20 19 18 22 22 C 1.31794 * 120.81888 * 359.97438 * 21 20 19 23 23 N 1.31795 * 121.75372 * 0.02562 * 22 21 20 24 24 C 1.32334 * 120.81807 * 0.02562 * 23 22 21 25 25 H 1.09005 * 109.47120 * 59.99781 * 1 2 3 26 26 H 1.08996 * 109.47405 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47245 * 299.99797 * 1 2 3 28 28 H 1.09008 * 109.46478 * 59.99971 * 3 2 1 29 29 H 1.09001 * 109.47012 * 300.00400 * 3 2 1 30 30 H 1.09003 * 109.47512 * 304.99850 * 4 3 2 31 31 H 1.08999 * 109.47398 * 185.00372 * 4 3 2 32 32 H 1.08997 * 109.46904 * 30.00720 * 6 5 4 33 33 H 1.08999 * 109.46663 * 149.99791 * 6 5 4 34 34 H 0.97003 * 119.99466 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.47033 * 59.99689 * 17 15 5 36 36 H 1.09005 * 109.47292 * 299.99987 * 17 15 5 37 37 H 1.08998 * 109.46952 * 60.00104 * 18 17 15 38 38 H 1.08997 * 109.47566 * 300.00466 * 18 17 15 39 39 H 1.07994 * 120.45169 * 359.95292 * 20 19 18 40 40 H 1.08003 * 119.12654 * 179.71869 * 22 21 20 41 41 H 1.07998 * 120.44737 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3402 7 6 5.5018 -1.2980 -0.9412 8 1 6.2201 -0.5461 -0.6497 9 6 5.8614 -2.6291 -0.9482 10 7 4.9868 -3.5447 -1.3036 11 14 7.5910 -3.1318 -0.4528 12 1 8.3757 -1.9220 -0.0984 13 1 7.5255 -4.0401 0.7203 14 1 8.2462 -3.8331 -1.5860 15 6 4.2634 1.3330 -2.3200 16 8 4.1557 2.5388 -2.2460 17 6 4.7167 0.6945 -3.6075 18 6 4.9733 1.7816 -4.6531 19 6 5.4273 1.1432 -5.9405 20 6 4.5089 0.7636 -6.9068 21 7 4.9446 0.2063 -8.0251 22 6 6.2326 0.0118 -8.2255 23 7 7.1342 0.3599 -7.3294 24 6 6.7730 0.9215 -6.1869 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6885 1.8464 0.8901 29 1 1.6885 1.8465 -0.8900 30 1 3.8508 0.5686 0.8427 31 1 3.9784 2.1766 0.0903 32 1 3.3858 -1.3631 -0.6714 33 1 3.9139 -1.2122 -2.3644 34 1 5.2397 -4.4811 -1.3082 35 1 3.9427 0.0180 -3.9698 36 1 5.6354 0.1348 -3.4318 37 1 5.7472 2.4584 -4.2911 38 1 4.0545 2.3410 -4.8288 39 1 3.4521 0.9202 -6.7490 40 1 6.5576 -0.4496 -9.1463 41 1 7.5168 1.2040 -5.4567 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590033195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:19 Heat of formation + Delta-G solvation = -61.683487 kcal Electronic energy + Delta-G solvation = -23502.845731 eV Core-core repulsion = 19996.163152 eV Total energy + Delta-G solvation = -3506.682579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97720 -40.80082 -38.72664 -36.64074 -35.73457 -34.64900 -34.54978 -32.03080 -30.63277 -28.85466 -27.26629 -26.34374 -25.54122 -24.79950 -23.97087 -22.55780 -19.85963 -18.65913 -18.55175 -18.51232 -18.08632 -17.43762 -17.05745 -16.62459 -16.25184 -16.17990 -15.71359 -15.54716 -15.20802 -14.56287 -14.55069 -14.42278 -14.27011 -13.91146 -13.58686 -13.37233 -13.14856 -13.00682 -12.73911 -12.71544 -12.58115 -12.12895 -12.07326 -11.89209 -11.80308 -11.79241 -11.63221 -10.83349 -10.61869 -10.49185 -10.26385 -10.19734 -9.41279 -8.17702 -6.31950 -0.07461 0.10046 1.39703 1.43146 1.52934 1.79075 2.31530 2.45967 2.81992 2.95936 3.12927 3.27484 3.29680 3.62709 3.69499 3.86752 4.09012 4.16994 4.17359 4.31502 4.36255 4.41651 4.53540 4.55155 4.57393 4.67606 4.75244 4.82825 4.85608 4.92206 5.04158 5.16004 5.20291 5.35520 5.46248 5.68292 5.88377 5.97682 6.10399 6.30409 6.63339 6.86179 7.09463 7.32543 7.43926 8.87720 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.009907 B = 0.005484 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.465307 B = 5104.472611 C = 6924.829007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.056 3.944 4 C 0.115 3.885 5 N -0.593 5.593 6 C 0.260 3.740 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.021 3.979 10 N -0.920 5.920 11 Si 0.953 3.047 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.513 3.487 16 O -0.591 6.591 17 C -0.123 4.123 18 C -0.040 4.040 19 C -0.179 4.179 20 C 0.145 3.855 21 N -0.536 5.536 22 C 0.275 3.725 23 N -0.538 5.538 24 C 0.142 3.858 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.025 0.975 33 H 0.023 0.977 34 H 0.265 0.735 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.187 0.813 40 H 0.220 0.780 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.895 8.772 -5.146 10.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.022 4.022 4 C -0.008 4.008 5 N -0.322 5.322 6 C 0.139 3.861 7 C -0.581 4.581 8 H 0.073 0.927 9 C -0.180 4.180 10 N -0.559 5.559 11 Si 0.778 3.222 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.303 3.697 16 O -0.474 6.474 17 C -0.162 4.162 18 C -0.079 4.079 19 C -0.183 4.183 20 C -0.020 4.020 21 N -0.249 5.249 22 C -0.012 4.012 23 N -0.251 5.251 24 C -0.023 4.023 25 H 0.062 0.938 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.204 0.796 40 H 0.237 0.763 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.568 8.577 -5.971 11.043 hybrid contribution 0.329 -0.275 1.189 1.264 sum -3.239 8.302 -4.782 10.114 Atomic orbital electron populations 1.22868 0.80024 1.03280 1.00661 1.88011 1.21144 1.28408 1.95487 1.22940 0.93623 0.84681 1.00933 1.21488 0.92879 0.99419 0.87046 1.48159 1.63753 1.08893 1.11387 1.19002 0.95610 0.74433 0.97032 1.21752 0.98086 0.92390 1.45921 0.92735 1.25638 1.00793 0.96496 0.95040 1.70040 1.36000 1.01431 1.48444 0.85587 0.80287 0.78346 0.77953 1.19151 1.20581 1.20622 1.20809 0.76330 0.86449 0.86125 1.90569 1.56725 1.15017 1.85122 1.21533 1.03547 0.99080 0.92069 1.20093 1.03442 0.95818 0.88559 1.21712 0.95914 1.01879 0.98841 1.23569 1.01751 0.89231 0.87483 1.68479 1.18816 1.14647 1.22980 1.25509 0.84380 0.92726 0.98588 1.68474 1.40413 1.12629 1.03591 1.23535 0.95189 0.90076 0.93477 0.93806 0.89432 0.92461 0.90174 0.93845 0.90516 0.88651 0.95694 0.95944 0.92554 0.89279 0.89249 0.89604 0.89126 0.79567 0.76331 0.80140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -14.18 9.53 -148.98 -1.42 -15.60 16 3 C 0.06 1.70 6.28 71.98 0.45 2.16 16 4 C 0.11 4.07 5.81 86.38 0.50 4.57 16 5 N -0.59 -24.18 2.42 -826.17 -2.00 -26.17 16 6 C 0.26 12.45 4.78 85.63 0.41 12.86 16 7 C -0.54 -28.02 9.28 25.60 0.24 -27.78 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.02 1.08 5.46 84.66 0.46 1.54 16 10 N -0.92 -51.32 13.29 21.45 0.28 -51.04 16 11 Si 0.95 41.97 29.54 68.60 2.03 44.00 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 14 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 15 C 0.51 19.65 7.67 87.66 0.67 20.32 16 16 O -0.59 -23.53 15.56 -3.04 -0.05 -23.57 16 17 C -0.12 -4.05 4.23 29.84 0.13 -3.92 16 18 C -0.04 -1.04 4.68 29.85 0.14 -0.90 16 19 C -0.18 -4.49 5.17 -19.69 -0.10 -4.59 16 20 C 0.15 3.53 11.01 84.70 0.93 4.46 16 21 N -0.54 -13.94 10.44 -200.05 -2.09 -16.02 16 22 C 0.28 6.72 12.29 180.88 2.22 8.95 16 23 N -0.54 -14.52 10.44 -200.05 -2.09 -16.61 16 24 C 0.14 3.67 11.01 84.70 0.93 4.60 16 25 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 2.83 8.07 -2.39 -0.02 2.81 16 31 H 0.10 3.18 7.42 -2.39 -0.02 3.16 16 32 H 0.02 1.32 7.11 -2.39 -0.02 1.30 16 33 H 0.02 1.12 6.44 -2.39 -0.02 1.11 16 34 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.09 2.94 7.40 -2.39 -0.02 2.92 16 36 H 0.09 3.26 8.00 -2.38 -0.02 3.24 16 37 H 0.09 2.21 8.06 -2.39 -0.02 2.19 16 38 H 0.09 2.21 8.06 -2.39 -0.02 2.19 16 39 H 0.19 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.22 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -64.84 352.80 3.92 -60.92 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 1.02 Total: 19.91 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 8.24 Total: 24.19 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -5.89 Total: -109.85 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -1.47 Total: -39.17 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -64.84 3.92 -60.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590033195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.765 kcal (2) G-P(sol) polarization free energy of solvation -64.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds