Wall clock time and date at job start Tue Mar 31 2020 03:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00548 * 2 1 4 4 C 1.52999 * 109.47356 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46692 * 64.99947 * 4 3 2 6 6 C 1.36910 * 119.99822 * 269.99513 * 5 4 3 7 7 H 1.08000 * 119.99664 * 137.32770 * 6 5 4 8 8 C 1.39016 * 120.00275 * 317.32341 * 6 5 4 9 9 N 1.31385 * 120.00336 * 167.24205 * 8 6 5 10 10 Si 1.86796 * 119.99938 * 347.24301 * 8 6 5 11 11 H 1.48506 * 109.47364 * 95.17680 * 10 8 6 12 12 H 1.48507 * 109.47274 * 215.17127 * 10 8 6 13 13 H 1.48492 * 109.47304 * 335.17332 * 10 8 6 14 14 C 1.34780 * 120.00327 * 90.00210 * 5 4 3 15 15 O 1.21605 * 119.99697 * 4.50503 * 14 5 4 16 16 C 1.47602 * 120.00196 * 184.50591 * 14 5 4 17 17 N 1.32256 * 126.68401 * 356.39711 * 16 14 5 18 18 N 1.28838 * 110.14121 * 179.97438 * 17 16 14 19 19 H 0.97004 * 124.97651 * 179.66315 * 18 17 16 20 20 C 1.34330 * 110.05392 * 359.68329 * 18 17 16 21 21 C 1.35570 * 107.22535 * 0.11782 * 20 18 17 22 22 C 1.50375 * 124.62408 * 179.86439 * 21 20 18 23 23 C 1.53486 * 108.28378 * 343.68581 * 22 21 20 24 24 C 1.53113 * 109.50098 * 49.50595 * 23 22 21 25 25 C 1.50713 * 128.89825 * 180.14589 * 20 18 17 26 26 H 1.08996 * 109.47254 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46661 * 300.00549 * 1 2 3 28 28 H 1.08999 * 109.46575 * 60.00302 * 1 2 3 29 29 H 1.09000 * 109.47080 * 59.99574 * 3 2 1 30 30 H 1.09001 * 109.46436 * 299.99832 * 3 2 1 31 31 H 1.08999 * 109.47115 * 305.00242 * 4 3 2 32 32 H 1.09002 * 109.46978 * 184.99626 * 4 3 2 33 33 H 0.96997 * 120.00418 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.70482 * 103.40192 * 22 21 20 35 35 H 1.09003 * 109.70155 * 224.01053 * 22 21 20 36 36 H 1.09000 * 109.47231 * 289.49362 * 23 22 21 37 37 H 1.08993 * 109.45793 * 169.50623 * 23 22 21 38 38 H 1.09000 * 109.43853 * 169.90317 * 24 23 22 39 39 H 1.08997 * 109.41319 * 49.99517 * 24 23 22 40 40 H 1.09002 * 109.69635 * 282.98948 * 25 20 18 41 41 H 1.08997 * 109.68977 * 43.57228 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0978 -0.7974 -1.3344 7 1 3.7466 -1.3178 -2.2132 8 6 4.6727 -1.5096 -0.2881 9 7 4.5666 -2.8185 -0.2478 10 14 5.5962 -0.6056 1.0607 11 1 4.6831 -0.3578 2.2054 12 1 6.7446 -1.4313 1.5134 13 1 6.0951 0.6908 0.5358 14 6 4.2634 1.3326 -2.3201 15 8 4.2354 2.5445 -2.2226 16 6 4.6115 0.7038 -3.6093 17 7 4.7462 -0.5903 -3.8463 18 7 5.0547 -0.7853 -5.0819 19 1 5.2088 -1.6535 -5.4862 20 6 5.1322 0.3897 -5.7283 21 6 4.8550 1.3631 -4.8263 22 6 4.8364 2.8345 -5.1358 23 6 5.5632 3.0553 -6.4695 24 6 5.0155 2.0824 -7.5173 25 6 5.4581 0.6538 -7.1759 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6888 1.8462 -0.8900 31 1 3.8509 0.5683 0.8427 32 1 3.9786 2.1764 0.0901 33 1 4.9674 -3.3155 0.4824 34 1 3.8057 3.1799 -5.2172 35 1 5.3469 3.3831 -4.3443 36 1 6.6307 2.8809 -6.3348 37 1 5.4020 4.0795 -6.8056 38 1 5.3980 2.3554 -8.5008 39 1 3.9268 2.1330 -7.5246 40 1 6.5319 0.5541 -7.3347 41 1 4.9253 -0.0566 -7.8078 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590892269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:26 Heat of formation + Delta-G solvation = 7.615873 kcal Electronic energy + Delta-G solvation = -24644.150011 eV Core-core repulsion = 21140.472478 eV Total energy + Delta-G solvation = -3503.677534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.07154 -38.63577 -36.94168 -36.60748 -34.69008 -32.07282 -31.76697 -29.80685 -29.44612 -28.60343 -25.82838 -24.81062 -23.40600 -23.33741 -21.94990 -21.42100 -18.78167 -18.49584 -17.49536 -16.62029 -16.19559 -15.78255 -15.35753 -15.20952 -14.58411 -14.38306 -14.20507 -13.82189 -13.69791 -13.41531 -13.24713 -12.78766 -12.67340 -12.42258 -12.33653 -11.82584 -11.76471 -11.57036 -11.30091 -10.84079 -10.76252 -10.72156 -10.64110 -10.42995 -10.13949 -9.78075 -9.45994 -9.08022 -9.03022 -8.57810 -8.49654 -8.01750 -7.58158 -6.18241 -3.79768 2.51609 2.74008 3.19829 3.33880 3.39066 3.51454 4.28374 4.36052 4.45160 4.55043 4.84448 4.94329 4.98993 5.19658 5.38396 5.51658 5.61554 5.62982 5.65820 5.71358 5.73009 5.82939 5.84930 5.88472 5.95154 6.00032 6.09064 6.15550 6.18150 6.29545 6.43724 6.46045 6.51972 6.55741 6.78784 7.17703 7.52066 7.68318 7.85411 8.27105 8.67455 8.72513 9.21291 9.54357 9.79287 10.92215 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017261 B = 0.005708 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.761980 B = 4904.491925 C = 5385.762247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.056 3.944 4 C 0.101 3.899 5 N -0.443 5.443 6 C -0.302 4.302 7 H 0.127 0.873 8 C 0.069 3.931 9 N -0.867 5.867 10 Si 0.871 3.129 11 H -0.275 1.275 12 H -0.291 1.291 13 H -0.264 1.264 14 C 0.553 3.447 15 O -0.597 6.597 16 C 0.022 3.978 17 N -0.209 5.209 18 N -0.394 5.394 19 H 0.436 0.564 20 C -0.016 4.016 21 C -0.157 4.157 22 C -0.036 4.036 23 C -0.119 4.119 24 C -0.112 4.112 25 C -0.042 4.042 26 H 0.080 0.920 27 H 0.029 0.971 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.270 0.730 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.264 6.511 -10.006 12.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C -0.022 4.022 4 C -0.022 4.022 5 N -0.162 5.162 6 C -0.431 4.431 7 H 0.144 0.856 8 C -0.136 4.136 9 N -0.504 5.504 10 Si 0.700 3.300 11 H -0.202 1.202 12 H -0.219 1.219 13 H -0.189 1.189 14 C 0.342 3.658 15 O -0.481 6.481 16 C -0.138 4.138 17 N -0.043 5.043 18 N -0.105 5.105 19 H 0.279 0.721 20 C -0.142 4.142 21 C -0.168 4.168 22 C -0.074 4.074 23 C -0.157 4.157 24 C -0.150 4.150 25 C -0.081 4.081 26 H 0.099 0.901 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.195 5.738 -9.287 10.982 hybrid contribution 0.357 0.510 0.371 0.725 sum -0.839 6.248 -8.916 10.920 Atomic orbital electron populations 1.22655 0.83069 1.02079 0.98694 1.88230 1.17648 1.26584 1.94997 1.22872 0.94808 0.85263 0.99292 1.21765 0.92243 0.99085 0.89120 1.43582 1.56218 1.07557 1.08831 1.19461 1.38047 0.78622 1.06980 0.85576 1.25283 0.95877 0.95094 0.97354 1.69655 1.42576 1.06044 1.32152 0.87032 0.79899 0.80589 0.82494 1.20247 1.21863 1.18865 1.17100 0.80308 0.85390 0.82993 1.90603 1.59120 1.13527 1.84862 1.21526 1.08003 0.89206 0.95097 1.74850 1.15386 1.18695 0.95381 1.43475 1.51530 1.08146 1.07371 0.72105 1.21002 1.09963 0.86743 0.96477 1.19786 1.09001 0.96180 0.91842 1.19866 1.00544 0.90687 0.96311 1.21664 1.00201 0.98605 0.95235 1.21531 1.01375 0.93609 0.98494 1.20108 1.01205 0.97863 0.88941 0.90109 0.95199 0.94927 0.93793 0.93322 0.90978 0.89417 0.92019 0.91419 0.90031 0.91977 0.91807 0.91582 0.91555 0.90656 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.65 16 2 O -0.36 -7.87 10.18 -35.23 -0.36 -8.23 16 3 C 0.06 1.13 6.28 37.16 0.23 1.37 16 4 C 0.10 2.33 4.50 -4.04 -0.02 2.32 16 5 N -0.44 -11.40 2.11 -115.97 -0.24 -11.65 16 6 C -0.30 -8.39 7.97 -15.00 -0.12 -8.51 16 7 H 0.13 3.75 6.07 -52.49 -0.32 3.43 16 8 C 0.07 1.95 5.42 -17.45 -0.09 1.85 16 9 N -0.87 -25.27 13.96 55.50 0.77 -24.50 16 10 Si 0.87 21.73 24.71 -169.99 -4.20 17.53 16 11 H -0.28 -6.59 6.82 56.52 0.39 -6.21 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.26 -6.63 6.97 56.52 0.39 -6.24 16 14 C 0.55 13.99 7.64 -12.44 -0.09 13.90 16 15 O -0.60 -15.21 15.32 5.27 0.08 -15.13 16 16 C 0.02 0.50 6.85 -83.00 -0.57 -0.06 16 17 N -0.21 -4.72 9.04 33.27 0.30 -4.42 16 18 N -0.39 -6.80 6.82 33.42 0.23 -6.57 16 19 H 0.44 5.81 8.96 -190.21 -1.71 4.10 16 20 C -0.02 -0.25 7.12 -82.45 -0.59 -0.84 16 21 C -0.16 -3.02 5.99 -104.87 -0.63 -3.65 16 22 C -0.04 -0.59 5.57 -27.79 -0.15 -0.74 16 23 C -0.12 -1.44 5.91 -26.42 -0.16 -1.60 16 24 C -0.11 -1.17 5.89 -26.46 -0.16 -1.33 16 25 C -0.04 -0.47 6.31 -27.67 -0.17 -0.64 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.73 3.23 -51.93 -0.17 1.56 16 32 H 0.09 1.92 7.36 -51.93 -0.38 1.54 16 33 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.47 7.60 -51.93 -0.39 1.07 16 36 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -33.75 328.68 -7.07 -40.82 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.20 Total: 3.49 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.41 Total: 3.70 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 1.06 Total: -47.13 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.28 Total: -23.36 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.20 Total: 17.53 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.75 -7.07 -40.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.431 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds