Wall clock time and date at job start Tue Mar 31 2020 03:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00548 * 2 1 4 4 C 1.52999 * 109.47356 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46692 * 64.99947 * 4 3 2 6 6 C 1.36910 * 119.99822 * 269.99513 * 5 4 3 7 7 H 1.08000 * 119.99664 * 137.32770 * 6 5 4 8 8 C 1.39016 * 120.00275 * 317.32341 * 6 5 4 9 9 N 1.31385 * 120.00336 * 167.24205 * 8 6 5 10 10 Si 1.86796 * 119.99938 * 347.24301 * 8 6 5 11 11 H 1.48506 * 109.47364 * 95.17680 * 10 8 6 12 12 H 1.48507 * 109.47274 * 215.17127 * 10 8 6 13 13 H 1.48492 * 109.47304 * 335.17332 * 10 8 6 14 14 C 1.34780 * 120.00327 * 90.00210 * 5 4 3 15 15 O 1.21605 * 119.99697 * 4.50503 * 14 5 4 16 16 C 1.47602 * 120.00196 * 184.50591 * 14 5 4 17 17 N 1.32256 * 126.68401 * 356.39711 * 16 14 5 18 18 N 1.28838 * 110.14121 * 179.97438 * 17 16 14 19 19 H 0.97004 * 124.97651 * 179.66315 * 18 17 16 20 20 C 1.34330 * 110.05392 * 359.68329 * 18 17 16 21 21 C 1.35570 * 107.22535 * 0.11782 * 20 18 17 22 22 C 1.50375 * 124.62408 * 179.86439 * 21 20 18 23 23 C 1.53486 * 108.28378 * 343.68581 * 22 21 20 24 24 C 1.53113 * 109.50098 * 49.50595 * 23 22 21 25 25 C 1.50713 * 128.89825 * 180.14589 * 20 18 17 26 26 H 1.08996 * 109.47254 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46661 * 300.00549 * 1 2 3 28 28 H 1.08999 * 109.46575 * 60.00302 * 1 2 3 29 29 H 1.09000 * 109.47080 * 59.99574 * 3 2 1 30 30 H 1.09001 * 109.46436 * 299.99832 * 3 2 1 31 31 H 1.08999 * 109.47115 * 305.00242 * 4 3 2 32 32 H 1.09002 * 109.46978 * 184.99626 * 4 3 2 33 33 H 0.96997 * 120.00418 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.70482 * 103.40192 * 22 21 20 35 35 H 1.09003 * 109.70155 * 224.01053 * 22 21 20 36 36 H 1.09000 * 109.47231 * 289.49362 * 23 22 21 37 37 H 1.08993 * 109.45793 * 169.50623 * 23 22 21 38 38 H 1.09000 * 109.43853 * 169.90317 * 24 23 22 39 39 H 1.08997 * 109.41319 * 49.99517 * 24 23 22 40 40 H 1.09002 * 109.69635 * 282.98948 * 25 20 18 41 41 H 1.08997 * 109.68977 * 43.57228 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0978 -0.7974 -1.3344 7 1 3.7466 -1.3178 -2.2132 8 6 4.6727 -1.5096 -0.2881 9 7 4.5666 -2.8185 -0.2478 10 14 5.5962 -0.6056 1.0607 11 1 4.6831 -0.3578 2.2054 12 1 6.7446 -1.4313 1.5134 13 1 6.0951 0.6908 0.5358 14 6 4.2634 1.3326 -2.3201 15 8 4.2354 2.5445 -2.2226 16 6 4.6115 0.7038 -3.6093 17 7 4.7462 -0.5903 -3.8463 18 7 5.0547 -0.7853 -5.0819 19 1 5.2088 -1.6535 -5.4862 20 6 5.1322 0.3897 -5.7283 21 6 4.8550 1.3631 -4.8263 22 6 4.8364 2.8345 -5.1358 23 6 5.5632 3.0553 -6.4695 24 6 5.0155 2.0824 -7.5173 25 6 5.4581 0.6538 -7.1759 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6888 1.8462 -0.8900 31 1 3.8509 0.5683 0.8427 32 1 3.9786 2.1764 0.0901 33 1 4.9674 -3.3155 0.4824 34 1 3.8057 3.1799 -5.2172 35 1 5.3469 3.3831 -4.3443 36 1 6.6307 2.8809 -6.3348 37 1 5.4020 4.0795 -6.8056 38 1 5.3980 2.3554 -8.5008 39 1 3.9268 2.1330 -7.5246 40 1 6.5319 0.5541 -7.3347 41 1 4.9253 -0.0566 -7.8078 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590892269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:25 Heat of formation + Delta-G solvation = -16.573730 kcal Electronic energy + Delta-G solvation = -24645.198951 eV Core-core repulsion = 21140.472478 eV Total energy + Delta-G solvation = -3504.726473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.56493 -40.52787 -38.58596 -37.71585 -36.62600 -33.88006 -33.48508 -31.34243 -30.71078 -30.03424 -27.27837 -26.84675 -25.07240 -24.54071 -23.41566 -22.76038 -20.68322 -19.81698 -19.09585 -18.30916 -17.91084 -17.51657 -16.92557 -16.71118 -16.29410 -16.06896 -15.68236 -15.44489 -15.10402 -14.65589 -14.45636 -14.42311 -14.30558 -13.92797 -13.79677 -13.57338 -13.23535 -13.08666 -12.88085 -12.63457 -12.41270 -12.04380 -11.69289 -11.64991 -11.61582 -11.47192 -11.17503 -11.02301 -10.65859 -10.46098 -10.09711 -9.61111 -9.40148 -8.31173 -5.94989 0.83078 1.19709 1.27929 1.33378 1.38542 2.14798 2.25530 2.58620 2.64068 2.94024 3.20439 3.73801 3.84143 3.99646 4.06837 4.11864 4.14059 4.35141 4.37312 4.42933 4.49591 4.53020 4.55937 4.65018 4.73033 4.73884 4.75165 4.82738 4.88581 5.09811 5.12464 5.26254 5.32384 5.47407 5.53710 5.54717 5.69318 6.21384 6.34477 6.38755 6.56527 7.00331 7.24722 7.51072 7.77221 8.82539 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017261 B = 0.005708 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.761980 B = 4904.491925 C = 5385.762247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.062 3.938 4 C 0.091 3.909 5 N -0.456 5.456 6 C -0.291 4.291 7 H 0.100 0.900 8 C 0.027 3.973 9 N -0.907 5.907 10 Si 0.921 3.079 11 H -0.258 1.258 12 H -0.290 1.290 13 H -0.271 1.271 14 C 0.547 3.453 15 O -0.606 6.606 16 C -0.020 4.020 17 N -0.252 5.252 18 N -0.379 5.379 19 H 0.453 0.547 20 C 0.013 3.987 21 C -0.183 4.183 22 C -0.035 4.035 23 C -0.113 4.113 24 C -0.109 4.109 25 C -0.041 4.041 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.272 0.728 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 7.628 -11.990 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.016 4.016 4 C -0.031 4.031 5 N -0.176 5.176 6 C -0.421 4.421 7 H 0.117 0.883 8 C -0.175 4.175 9 N -0.547 5.547 10 Si 0.749 3.251 11 H -0.184 1.184 12 H -0.217 1.217 13 H -0.196 1.196 14 C 0.337 3.663 15 O -0.492 6.492 16 C -0.179 4.179 17 N -0.088 5.088 18 N -0.093 5.093 19 H 0.299 0.701 20 C -0.114 4.114 21 C -0.194 4.194 22 C -0.074 4.074 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.080 4.080 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.999 6.855 -11.260 13.220 hybrid contribution 0.247 0.202 0.818 0.879 sum -0.752 7.058 -10.441 12.625 Atomic orbital electron populations 1.22863 0.80442 1.03123 1.00466 1.88156 1.20683 1.27595 1.95354 1.22805 0.92840 0.85133 1.00798 1.21927 0.94539 0.98912 0.87724 1.43672 1.57096 1.06921 1.09871 1.19173 1.37413 0.79455 1.06016 0.88308 1.25782 0.96693 0.95620 0.99384 1.69736 1.44376 1.07173 1.33386 0.86221 0.79024 0.79026 0.80838 1.18397 1.21691 1.19631 1.17539 0.79474 0.85483 0.83784 1.90562 1.59404 1.13831 1.85355 1.21577 1.10335 0.90277 0.95694 1.74696 1.17172 1.18872 0.98026 1.43501 1.49867 1.09691 1.06218 0.70101 1.21772 1.06239 0.84998 0.98393 1.20209 1.09965 0.98189 0.91019 1.19893 1.00543 0.88696 0.98244 1.21646 0.99652 1.00628 0.93107 1.21572 1.01215 0.92379 0.99529 1.20425 1.03137 0.99182 0.85229 0.89554 0.92293 0.94139 0.89892 0.93934 0.91813 0.88659 0.91848 0.92047 0.92723 0.91757 0.89640 0.87817 0.92016 0.88257 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.12 16 2 O -0.40 -17.62 10.18 -148.98 -1.52 -19.14 16 3 C 0.06 2.49 6.28 71.98 0.45 2.94 16 4 C 0.09 4.26 4.50 86.38 0.39 4.65 16 5 N -0.46 -24.16 2.11 -639.06 -1.35 -25.51 16 6 C -0.29 -16.79 7.97 84.09 0.67 -16.12 16 7 H 0.10 6.19 6.07 -2.91 -0.02 6.17 16 8 C 0.03 1.54 5.42 84.95 0.46 2.00 16 9 N -0.91 -54.51 13.96 21.68 0.30 -54.21 16 10 Si 0.92 45.67 24.71 68.60 1.69 47.37 16 11 H -0.26 -11.93 6.82 99.48 0.68 -11.25 16 12 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 13 H -0.27 -13.60 6.97 99.48 0.69 -12.90 16 14 C 0.55 28.67 7.64 86.71 0.66 29.34 16 15 O -0.61 -31.83 15.32 -4.05 -0.06 -31.89 16 16 C -0.02 -0.97 6.85 42.11 0.29 -0.68 16 17 N -0.25 -11.70 9.04 -48.65 -0.44 -12.14 16 18 N -0.38 -12.84 6.82 -48.17 -0.33 -13.17 16 19 H 0.45 11.51 8.96 -219.80 -1.97 9.54 16 20 C 0.01 0.41 7.12 41.56 0.30 0.70 16 21 C -0.18 -7.01 5.99 -20.02 -0.12 -7.13 16 22 C -0.04 -1.15 5.57 29.91 0.17 -0.98 16 23 C -0.11 -2.40 5.91 30.80 0.18 -2.22 16 24 C -0.11 -1.79 5.89 30.77 0.18 -1.61 16 25 C -0.04 -0.73 6.31 29.99 0.19 -0.54 16 26 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 3.05 3.23 -2.39 -0.01 3.05 16 32 H 0.10 4.19 7.36 -2.39 -0.02 4.17 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 2.02 7.60 -2.39 -0.02 2.00 16 36 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.11 8.11 -2.39 -0.02 1.09 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -77.45 328.68 2.41 -75.04 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -0.96 Total: 21.18 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 5.07 Total: 12.48 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -1.81 Total: -105.03 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -1.58 Total: -51.03 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.69 Total: 47.37 kcal Total: -77.45 2.41 -75.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.465 kcal (2) G-P(sol) polarization free energy of solvation -77.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds