Wall clock time and date at job start Tue Mar 31 2020 03:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36336 * 125.63669 * 2 1 4 4 C 1.34851 * 108.21763 * 179.76354 * 3 2 1 5 5 C 1.40890 * 107.41497 * 0.43000 * 4 3 2 6 6 C 1.50705 * 126.28623 * 179.82960 * 5 4 3 7 7 N 1.46492 * 109.47142 * 269.69093 * 6 5 4 8 8 C 1.34774 * 120.00106 * 180.02562 * 7 6 5 9 9 O 1.21587 * 120.00063 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00483 * 179.97438 * 8 7 6 11 11 C 1.47028 * 125.64307 * 0.03239 * 10 8 7 12 12 C 1.54320 * 107.26701 * 178.89770 * 11 10 8 13 13 C 1.55153 * 102.94383 * 337.80525 * 12 11 10 14 14 O 1.42895 * 111.00660 * 277.38826 * 13 12 11 15 15 C 1.50702 * 111.00367 * 153.57571 * 13 12 11 16 16 H 1.08002 * 120.00299 * 3.18452 * 15 13 12 17 17 C 1.37884 * 119.99942 * 182.90010 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.47463 * 125.63121 * 179.97438 * 10 8 7 24 24 C 1.34852 * 107.41810 * 359.57046 * 5 4 3 25 25 H 1.09001 * 109.46890 * 269.95674 * 1 2 3 26 26 H 1.08993 * 109.46755 * 29.95440 * 1 2 3 27 27 H 1.08994 * 109.47187 * 149.95859 * 1 2 3 28 28 H 1.08002 * 125.88815 * 0.04162 * 3 2 1 29 29 H 1.08004 * 126.29099 * 180.30285 * 4 3 2 30 30 H 1.09003 * 109.46366 * 149.69000 * 6 5 4 31 31 H 1.09002 * 109.47284 * 29.69749 * 6 5 4 32 32 H 0.97000 * 120.00329 * 0.02562 * 7 6 5 33 33 H 1.09000 * 109.88086 * 59.48194 * 11 10 8 34 34 H 1.09003 * 109.87956 * 298.31182 * 11 10 8 35 35 H 1.09004 * 110.71836 * 219.43859 * 12 11 10 36 36 H 1.09006 * 110.72351 * 96.16930 * 12 11 10 37 37 H 0.96695 * 114.00567 * 176.81707 * 14 13 12 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.08998 * 110.34826 * 85.33075 * 23 10 8 40 40 H 1.09002 * 110.40574 * 322.99292 * 23 10 8 41 41 H 1.07997 * 125.88464 * 180.24270 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1080 0.0000 4 6 3.5461 0.7044 0.0053 5 6 3.5460 -0.7045 -0.0014 6 6 4.7608 -1.5965 -0.0025 7 7 5.1536 -1.8849 -1.3839 8 6 6.2212 -2.6695 -1.6312 9 8 6.8580 -3.1383 -0.7076 10 7 6.5824 -2.9353 -2.9022 11 6 5.9043 -2.4367 -4.1077 12 6 6.6829 -2.9745 -5.3267 13 6 8.0852 -3.2791 -4.7367 14 8 8.8854 -2.0965 -4.6809 15 6 8.7792 -4.3606 -5.5239 16 1 8.3098 -4.7732 -6.4048 17 6 10.0160 -4.8195 -5.1229 18 7 10.5876 -4.3172 -4.0502 19 14 10.8796 -6.1547 -6.1030 20 1 11.7270 -5.5302 -7.1505 21 1 11.7315 -6.9633 -5.1943 22 1 9.8671 -7.0321 -6.7435 23 6 7.7238 -3.7735 -3.3135 24 6 2.2593 -1.1081 -0.0009 25 1 -0.3633 -0.0008 1.0277 26 1 -0.3632 0.8904 -0.5131 27 1 -0.3633 -0.8896 -0.5144 28 1 1.9172 2.1324 0.0006 29 1 4.4166 1.3436 0.0113 30 1 4.5271 -2.5291 0.5112 31 1 5.5807 -1.0944 0.5112 32 1 4.6454 -1.5113 -2.1208 33 1 5.9128 -1.3468 -4.1138 34 1 4.8775 -2.8017 -4.1332 35 1 6.7492 -2.2162 -6.1071 36 1 6.2198 -3.8839 -5.7097 37 1 9.7529 -2.2274 -4.2744 38 1 11.4576 -4.6403 -3.7679 39 1 7.4331 -4.8237 -3.3389 40 1 8.5655 -3.6283 -2.6363 41 1 1.9172 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591977337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:22 Heat of formation + Delta-G solvation = -20.659996 kcal Electronic energy + Delta-G solvation = -23387.558976 eV Core-core repulsion = 19882.655308 eV Total energy + Delta-G solvation = -3504.903667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.33687 -39.42044 -37.28740 -34.72682 -34.12209 -32.64001 -32.11989 -30.17606 -29.20443 -27.81993 -27.30809 -25.29552 -24.17239 -22.33907 -20.49351 -19.81871 -19.55222 -19.24232 -17.69231 -17.08388 -16.75056 -15.65465 -15.31636 -15.18363 -14.88797 -14.41743 -14.19603 -13.93925 -13.78055 -13.17316 -12.99413 -12.94035 -12.78358 -12.64665 -12.52239 -12.07546 -11.74274 -11.66819 -11.54657 -11.27552 -10.99290 -10.73185 -10.51565 -10.41967 -10.11609 -9.54255 -9.31033 -8.69790 -8.63041 -8.59923 -8.31806 -8.24308 -7.54996 -6.21935 -4.31476 2.04916 2.67825 2.75110 3.24656 3.32225 3.34621 3.58647 3.91835 4.31089 4.42715 4.73696 4.78083 4.82009 5.00338 5.02371 5.05197 5.20718 5.37803 5.51102 5.73959 5.78372 5.85206 5.99218 6.01833 6.12330 6.23203 6.36499 6.59686 6.78924 6.82670 6.97177 6.98440 7.04605 7.10865 7.17889 7.33118 7.41637 7.80042 7.82531 8.09689 8.67598 8.75370 9.30332 9.37732 9.49277 10.85216 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.036161 B = 0.003047 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.138669 B = 9188.208128 C = 9402.220055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.454 5.454 3 C -0.022 4.022 4 C -0.180 4.180 5 C -0.182 4.182 6 C 0.215 3.785 7 N -0.746 5.746 8 C 0.715 3.285 9 O -0.600 6.600 10 N -0.629 5.629 11 C 0.107 3.893 12 C -0.116 4.116 13 C 0.248 3.752 14 O -0.583 6.583 15 C -0.537 4.537 16 H 0.066 0.934 17 C 0.070 3.930 18 N -0.892 5.892 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.113 3.887 24 C 0.005 3.995 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.161 0.839 29 H 0.137 0.863 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.393 0.607 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.383 0.617 38 H 0.270 0.730 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.326 8.644 5.897 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.130 5.130 3 C -0.151 4.151 4 C -0.205 4.205 5 C -0.189 4.189 6 C 0.090 3.910 7 N -0.403 5.403 8 C 0.417 3.583 9 O -0.480 6.480 10 N -0.366 5.366 11 C -0.016 4.016 12 C -0.154 4.154 13 C 0.207 3.793 14 O -0.393 6.393 15 C -0.576 4.576 16 H 0.084 0.916 17 C -0.133 4.133 18 N -0.531 5.531 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.009 4.009 24 C -0.126 4.126 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.178 0.822 29 H 0.155 0.845 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.226 0.774 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.234 0.766 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -19.616 8.552 6.501 22.365 hybrid contribution 0.614 -0.720 -0.513 1.077 sum -19.001 7.832 5.989 21.407 Atomic orbital electron populations 1.22004 0.77367 1.04294 1.03098 1.43974 1.06110 1.06227 1.56709 1.21802 0.90431 0.91400 1.11429 1.20894 0.96061 0.94493 1.09068 1.19535 0.93368 0.94240 1.11798 1.19231 0.92598 0.96567 0.82558 1.45243 1.32096 1.54672 1.08293 1.15563 0.80722 0.79570 0.82470 1.90873 1.56378 1.57869 1.42839 1.47911 1.33102 1.52856 1.02723 1.21892 0.95267 0.98057 0.86429 1.22589 0.96450 1.00708 0.95646 1.19625 0.86677 0.83788 0.89178 1.86074 1.32688 1.35772 1.84732 1.21480 1.03496 1.20460 1.12134 0.91574 1.25088 0.97090 0.96465 0.94647 1.69664 1.16988 1.43029 1.23432 0.86405 0.79452 0.81309 0.79718 1.20449 1.21029 1.19748 1.23116 0.86272 0.92360 0.99120 1.21727 0.90051 0.91466 1.09356 0.91059 0.89939 0.89894 0.82206 0.84497 0.91826 0.91455 0.77378 0.92729 0.93336 0.90879 0.90537 0.76586 0.91974 0.92611 0.89924 0.82036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 11.12 59.85 0.67 1.01 16 2 N -0.45 -3.95 3.15 -124.53 -0.39 -4.34 16 3 C -0.02 -0.20 11.43 -16.75 -0.19 -0.40 16 4 C -0.18 -2.06 10.81 -39.78 -0.43 -2.49 16 5 C -0.18 -2.23 5.51 -104.82 -0.58 -2.81 16 6 C 0.21 3.16 6.17 -5.20 -0.03 3.13 16 7 N -0.75 -12.43 5.51 -66.41 -0.37 -12.79 16 8 C 0.71 15.45 8.49 -86.92 -0.74 14.71 16 9 O -0.60 -15.28 16.60 5.29 0.09 -15.19 16 10 N -0.63 -13.68 3.33 -176.18 -0.59 -14.27 16 11 C 0.11 1.96 6.15 -3.06 -0.02 1.94 16 12 C -0.12 -2.35 6.13 -24.90 -0.15 -2.50 16 13 C 0.25 6.14 0.88 -89.61 -0.08 6.06 16 14 O -0.58 -15.29 13.17 -35.23 -0.46 -15.76 16 15 C -0.54 -14.17 8.25 -34.44 -0.28 -14.45 16 16 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 17 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 18 N -0.89 -24.28 10.69 55.43 0.59 -23.69 16 19 Si 0.90 20.61 29.54 -169.99 -5.02 15.58 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C 0.11 2.83 5.52 -2.49 -0.01 2.82 16 24 C 0.01 0.05 11.35 -16.75 -0.19 -0.14 16 25 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.39 5.81 7.45 -40.82 -0.30 5.51 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 37 H 0.38 10.38 7.24 45.56 0.33 10.71 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 40 H 0.08 2.33 7.48 -51.93 -0.39 1.94 16 41 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -32.46 344.01 -8.49 -40.95 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -5.39 Total: 15.67 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -2.14 Total: 8.66 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.75 Total: -55.10 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.38 Total: -30.95 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.46 -8.49 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.292 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds