Wall clock time and date at job start Tue Mar 31 2020 03:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36336 * 125.63669 * 2 1 4 4 C 1.34851 * 108.21763 * 179.76354 * 3 2 1 5 5 C 1.40890 * 107.41497 * 0.43000 * 4 3 2 6 6 C 1.50705 * 126.28623 * 179.82960 * 5 4 3 7 7 N 1.46492 * 109.47142 * 269.69093 * 6 5 4 8 8 C 1.34774 * 120.00106 * 180.02562 * 7 6 5 9 9 O 1.21587 * 120.00063 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00483 * 179.97438 * 8 7 6 11 11 C 1.47028 * 125.64307 * 0.03239 * 10 8 7 12 12 C 1.54320 * 107.26701 * 178.89770 * 11 10 8 13 13 C 1.55153 * 102.94383 * 337.80525 * 12 11 10 14 14 O 1.42895 * 111.00660 * 277.38826 * 13 12 11 15 15 C 1.50702 * 111.00367 * 153.57571 * 13 12 11 16 16 H 1.08002 * 120.00299 * 3.18452 * 15 13 12 17 17 C 1.37884 * 119.99942 * 182.90010 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.47463 * 125.63121 * 179.97438 * 10 8 7 24 24 C 1.34852 * 107.41810 * 359.57046 * 5 4 3 25 25 H 1.09001 * 109.46890 * 269.95674 * 1 2 3 26 26 H 1.08993 * 109.46755 * 29.95440 * 1 2 3 27 27 H 1.08994 * 109.47187 * 149.95859 * 1 2 3 28 28 H 1.08002 * 125.88815 * 0.04162 * 3 2 1 29 29 H 1.08004 * 126.29099 * 180.30285 * 4 3 2 30 30 H 1.09003 * 109.46366 * 149.69000 * 6 5 4 31 31 H 1.09002 * 109.47284 * 29.69749 * 6 5 4 32 32 H 0.97000 * 120.00329 * 0.02562 * 7 6 5 33 33 H 1.09000 * 109.88086 * 59.48194 * 11 10 8 34 34 H 1.09003 * 109.87956 * 298.31182 * 11 10 8 35 35 H 1.09004 * 110.71836 * 219.43859 * 12 11 10 36 36 H 1.09006 * 110.72351 * 96.16930 * 12 11 10 37 37 H 0.96695 * 114.00567 * 176.81707 * 14 13 12 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.08998 * 110.34826 * 85.33075 * 23 10 8 40 40 H 1.09002 * 110.40574 * 322.99292 * 23 10 8 41 41 H 1.07997 * 125.88464 * 180.24270 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1080 0.0000 4 6 3.5461 0.7044 0.0053 5 6 3.5460 -0.7045 -0.0014 6 6 4.7608 -1.5965 -0.0025 7 7 5.1536 -1.8849 -1.3839 8 6 6.2212 -2.6695 -1.6312 9 8 6.8580 -3.1383 -0.7076 10 7 6.5824 -2.9353 -2.9022 11 6 5.9043 -2.4367 -4.1077 12 6 6.6829 -2.9745 -5.3267 13 6 8.0852 -3.2791 -4.7367 14 8 8.8854 -2.0965 -4.6809 15 6 8.7792 -4.3606 -5.5239 16 1 8.3098 -4.7732 -6.4048 17 6 10.0160 -4.8195 -5.1229 18 7 10.5876 -4.3172 -4.0502 19 14 10.8796 -6.1547 -6.1030 20 1 11.7270 -5.5302 -7.1505 21 1 11.7315 -6.9633 -5.1943 22 1 9.8671 -7.0321 -6.7435 23 6 7.7238 -3.7735 -3.3135 24 6 2.2593 -1.1081 -0.0009 25 1 -0.3633 -0.0008 1.0277 26 1 -0.3632 0.8904 -0.5131 27 1 -0.3633 -0.8896 -0.5144 28 1 1.9172 2.1324 0.0006 29 1 4.4166 1.3436 0.0113 30 1 4.5271 -2.5291 0.5112 31 1 5.5807 -1.0944 0.5112 32 1 4.6454 -1.5113 -2.1208 33 1 5.9128 -1.3468 -4.1138 34 1 4.8775 -2.8017 -4.1332 35 1 6.7492 -2.2162 -6.1071 36 1 6.2198 -3.8839 -5.7097 37 1 9.7529 -2.2274 -4.2744 38 1 11.4576 -4.6403 -3.7679 39 1 7.4331 -4.8237 -3.3389 40 1 8.5655 -3.6283 -2.6363 41 1 1.9172 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591977337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:20 Heat of formation + Delta-G solvation = -43.934017 kcal Electronic energy + Delta-G solvation = -23388.568213 eV Core-core repulsion = 19882.655308 eV Total energy + Delta-G solvation = -3505.912904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.09921 -41.11101 -39.08003 -36.04526 -36.01408 -34.16869 -33.54985 -31.79646 -30.24167 -29.49706 -28.27343 -26.86686 -25.42592 -23.97218 -21.45282 -21.20931 -21.00033 -20.53508 -19.26116 -18.84314 -17.77969 -17.18141 -16.84774 -16.80485 -16.19350 -15.98478 -15.43387 -15.29594 -14.79250 -14.75775 -14.57349 -14.34252 -13.86149 -13.68206 -13.49111 -13.39243 -13.27510 -13.07603 -12.82661 -12.70354 -12.56494 -12.49156 -12.28736 -12.20454 -12.07329 -11.34003 -11.18930 -10.63382 -10.31520 -10.12724 -9.45886 -9.27487 -9.07057 -8.22537 -6.39890 1.23939 1.44044 1.45532 1.55708 1.65427 2.13892 2.18841 2.22927 2.40839 3.03377 3.27894 3.83014 3.98641 4.11413 4.18708 4.21014 4.22186 4.35963 4.40562 4.48426 4.51561 4.64248 4.76889 4.77838 4.79396 4.89110 5.08393 5.12154 5.22003 5.34505 5.41519 5.48120 5.51669 5.57127 5.78632 5.99984 6.06847 6.24433 6.27157 6.53165 6.67633 7.12682 7.31652 7.38562 7.62774 8.82994 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.036161 B = 0.003047 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.138669 B = 9188.208128 C = 9402.220055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.450 5.450 3 C -0.011 4.011 4 C -0.210 4.210 5 C -0.207 4.207 6 C 0.219 3.781 7 N -0.723 5.723 8 C 0.708 3.292 9 O -0.647 6.647 10 N -0.634 5.634 11 C 0.109 3.891 12 C -0.109 4.109 13 C 0.231 3.769 14 O -0.589 6.589 15 C -0.555 4.555 16 H 0.071 0.929 17 C 0.023 3.977 18 N -0.918 5.918 19 Si 0.967 3.033 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.264 1.264 23 C 0.127 3.873 24 C 0.009 3.991 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.190 0.810 29 H 0.131 0.869 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.405 0.595 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.374 0.626 38 H 0.269 0.731 39 H 0.041 0.959 40 H 0.039 0.961 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.411 9.278 4.813 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.125 5.125 3 C -0.141 4.141 4 C -0.235 4.235 5 C -0.214 4.214 6 C 0.095 3.905 7 N -0.379 5.379 8 C 0.410 3.590 9 O -0.531 6.531 10 N -0.371 5.371 11 C -0.013 4.013 12 C -0.147 4.147 13 C 0.191 3.809 14 O -0.397 6.397 15 C -0.593 4.593 16 H 0.089 0.911 17 C -0.178 4.178 18 N -0.557 5.557 19 Si 0.792 3.208 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.188 1.188 23 C 0.003 3.997 24 C -0.124 4.124 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.207 0.793 29 H 0.149 0.851 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.241 0.759 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.224 0.776 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -22.788 9.231 5.390 25.171 hybrid contribution 1.495 -0.865 -0.128 1.732 sum -21.293 8.366 5.262 23.475 Atomic orbital electron populations 1.22326 0.74642 1.05921 1.04459 1.44275 1.07735 1.05437 1.55036 1.22207 0.89736 0.92803 1.09367 1.21004 0.97229 0.94219 1.11013 1.19319 0.93094 0.94315 1.14663 1.19204 0.93380 0.96827 0.81091 1.45139 1.30274 1.52804 1.09708 1.15811 0.81449 0.79927 0.81842 1.90832 1.58162 1.59792 1.44273 1.47868 1.32600 1.52656 1.03932 1.22079 0.96460 0.98888 0.83883 1.22595 0.93580 1.01940 0.96599 1.19885 0.88595 0.83311 0.89124 1.86065 1.32365 1.36699 1.84591 1.21818 1.03979 1.21043 1.12440 0.91078 1.25880 0.97913 0.98494 0.95473 1.69793 1.17135 1.44107 1.24666 0.85419 0.78367 0.78759 0.78257 1.19994 1.21262 1.18813 1.22687 0.86121 0.92191 0.98685 1.21928 0.89617 0.92700 1.08114 0.89800 0.88072 0.88646 0.79287 0.85100 0.92215 0.93302 0.75875 0.91343 0.89346 0.89659 0.89114 0.77619 0.92147 0.94073 0.94226 0.80416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 11.12 127.77 1.42 1.77 16 2 N -0.45 -6.41 3.15 -547.90 -1.72 -8.14 16 3 C -0.01 -0.18 11.43 83.21 0.95 0.77 16 4 C -0.21 -4.58 10.81 22.14 0.24 -4.34 16 5 C -0.21 -4.87 5.51 -19.99 -0.11 -4.98 16 6 C 0.22 6.52 6.17 85.64 0.53 7.05 16 7 N -0.72 -23.78 5.51 -482.30 -2.66 -26.44 16 8 C 0.71 31.05 8.49 179.05 1.52 32.57 16 9 O -0.65 -34.36 16.60 -3.99 -0.07 -34.43 16 10 N -0.63 -27.60 3.33 -829.58 -2.76 -30.36 16 11 C 0.11 3.73 6.15 86.73 0.53 4.27 16 12 C -0.11 -4.23 6.13 31.78 0.19 -4.03 16 13 C 0.23 11.52 0.88 -10.14 -0.01 11.51 16 14 O -0.59 -31.41 13.17 -148.98 -1.96 -33.37 16 15 C -0.55 -29.30 8.25 25.60 0.21 -29.09 16 16 H 0.07 3.60 7.78 -2.91 -0.02 3.57 16 17 C 0.02 1.23 5.29 84.66 0.45 1.67 16 18 N -0.92 -51.48 10.69 21.45 0.23 -51.25 16 19 Si 0.97 42.44 29.54 68.60 2.03 44.46 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 23 C 0.13 6.54 5.52 86.86 0.48 7.02 16 24 C 0.01 0.17 11.35 83.21 0.94 1.11 16 25 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.10 0.20 8.14 -2.39 -0.02 0.19 16 27 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 29 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.41 11.28 7.45 -92.71 -0.69 10.59 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 36 H 0.09 3.23 8.03 -2.38 -0.02 3.21 16 37 H 0.37 21.09 7.24 -74.06 -0.54 20.55 16 38 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 39 H 0.04 2.19 8.03 -2.39 -0.02 2.17 16 40 H 0.04 2.35 7.48 -2.39 -0.02 2.33 16 41 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -72.84 344.01 0.26 -72.58 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -0.18 Total: 41.64 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 7.35 Total: 25.31 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -6.91 Total: -116.19 kcal Atomic # 8 Polarization: -65.77 SS G_CDS: -2.03 Total: -67.80 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -72.84 0.26 -72.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.650 kcal (2) G-P(sol) polarization free energy of solvation -72.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds