Wall clock time and date at job start Tue Mar 31 2020 03:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 180.02562 * 12 11 10 15 15 N 1.46500 * 109.47155 * 60.00161 * 14 12 11 16 16 C 1.34599 * 126.43799 * 284.71280 * 15 14 12 17 17 N 1.31072 * 106.68169 * 179.87776 * 16 15 14 18 18 N 1.28847 * 107.98681 * 0.38682 * 17 16 15 19 19 N 1.28741 * 109.39482 * 359.75182 * 18 17 16 20 20 C 1.52996 * 109.46946 * 299.99948 * 14 12 11 21 21 C 1.53005 * 109.47245 * 179.97438 * 20 14 12 22 22 C 1.53000 * 109.46632 * 59.99973 * 21 20 14 23 23 C 1.52996 * 109.47518 * 300.00318 * 22 21 20 24 24 C 1.52997 * 109.47084 * 180.02562 * 14 12 11 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 27 27 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 30 30 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 31 31 H 1.08006 * 126.65763 * 0.02562 * 16 15 14 32 32 H 1.09001 * 109.47372 * 299.99872 * 20 14 12 33 33 H 1.09004 * 109.47108 * 60.00127 * 20 14 12 34 34 H 1.09001 * 109.46962 * 300.00283 * 21 20 14 35 35 H 1.08992 * 109.47457 * 180.02562 * 21 20 14 36 36 H 1.09000 * 109.46968 * 180.02562 * 22 21 20 37 37 H 1.09001 * 109.47194 * 60.00452 * 22 21 20 38 38 H 1.09001 * 109.46993 * 299.99696 * 23 22 21 39 39 H 1.09000 * 109.47380 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.47045 * 299.99967 * 24 14 12 41 41 H 1.09001 * 109.47375 * 60.00042 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1868 -6.0980 0.0024 13 8 3.3996 -6.0979 0.0019 14 6 1.4333 -7.4031 0.0023 15 7 0.5915 -7.4809 -1.1941 16 6 -0.5636 -6.8224 -1.4031 17 7 -0.9864 -7.1727 -2.5933 18 7 -0.1396 -8.0095 -3.0860 19 7 0.8151 -8.1979 -2.2431 20 6 0.5533 -7.4839 1.2513 21 6 -0.2122 -8.8087 1.2510 22 6 0.7817 -9.9719 1.2512 23 6 1.6618 -9.8911 0.0023 24 6 2.4275 -8.5660 0.0035 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5564 0.8919 28 1 2.8714 -3.6047 -0.8890 29 1 2.8726 -3.6039 0.8910 30 1 0.5429 -4.9308 0.0020 31 1 -1.0469 -6.1364 -0.7232 32 1 1.1796 -7.4261 2.1415 33 1 -0.1551 -6.6554 1.2509 34 1 -0.8386 -8.8662 0.3608 35 1 -0.8395 -8.8661 2.1404 36 1 0.2364 -10.9157 1.2505 37 1 1.4081 -9.9145 2.1414 38 1 1.0354 -9.9486 -0.8879 39 1 2.3695 -10.7200 0.0022 40 1 3.0548 -8.5086 -0.8861 41 1 3.0536 -8.5079 0.8939 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593124825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:41 Heat of formation + Delta-G solvation = 65.791695 kcal Electronic energy + Delta-G solvation = -24389.079747 eV Core-core repulsion = 20920.217657 eV Total energy + Delta-G solvation = -3468.862089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -44.40520 -40.62661 -38.21908 -35.34891 -34.72464 -33.19983 -32.62780 -31.18791 -30.96005 -29.62001 -25.52828 -24.78411 -24.03673 -23.17060 -22.70178 -21.25253 -20.71085 -20.46693 -18.02384 -17.54862 -16.63667 -16.54377 -15.93027 -15.62847 -15.06772 -14.90479 -14.62989 -14.55031 -14.07498 -13.66843 -13.43748 -13.19942 -12.97118 -12.75515 -12.65913 -12.38045 -12.13121 -11.67906 -11.47846 -11.37793 -11.20460 -11.13345 -11.05797 -10.93680 -10.77694 -10.63739 -10.52263 -10.43177 -9.99462 -9.64528 -9.37872 -8.89678 -8.51711 -6.19357 -4.23282 1.10765 1.50285 2.19724 2.62087 3.01664 3.25030 3.29706 3.32897 3.66842 4.01555 4.06667 4.23376 4.34452 4.50726 4.57397 4.67534 4.72621 4.87475 4.97021 5.05643 5.18055 5.23161 5.30046 5.37554 5.50672 5.59642 5.64562 5.65207 5.79594 5.87744 5.93335 6.03989 6.09790 6.13537 6.40716 6.53880 7.30235 7.42858 7.50167 7.76680 8.01491 8.17439 8.53080 8.81569 9.42491 10.92012 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.022593 B = 0.003859 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.006772 B = 7253.602430 C = 7684.502961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.119 3.881 11 N -0.711 5.711 12 C 0.503 3.497 13 O -0.516 6.516 14 C 0.159 3.841 15 N -0.292 5.292 16 C 0.158 3.842 17 N -0.298 5.298 18 N -0.080 5.080 19 N -0.080 5.080 20 C -0.128 4.128 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.100 4.100 25 H 0.264 0.736 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.394 0.606 31 H 0.230 0.770 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.544 -18.778 5.213 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.002 4.002 11 N -0.360 5.360 12 C 0.284 3.716 13 O -0.391 6.391 14 C 0.072 3.928 15 N -0.096 5.096 16 C -0.140 4.140 17 N -0.146 5.146 18 N -0.074 5.074 19 N -0.066 5.066 20 C -0.167 4.167 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.164 4.164 24 C -0.138 4.138 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.228 0.772 31 H 0.246 0.754 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.721 -19.305 3.975 19.724 hybrid contribution -0.097 1.658 0.924 1.901 sum -0.818 -17.647 4.899 18.333 Atomic orbital electron populations 1.69925 1.06094 1.27206 1.49814 1.24978 0.94903 0.99445 0.94735 0.86559 0.79548 0.82547 0.78833 1.20063 1.21136 1.20055 1.20949 0.93197 0.90210 1.52132 0.92256 1.19333 0.94110 0.91003 0.97965 1.21914 0.96258 0.80716 1.01348 1.46459 1.10485 1.06759 1.72337 1.20102 0.88303 0.84654 0.78571 1.90753 1.12820 1.86730 1.48747 1.21719 0.91589 0.97604 0.81912 1.48702 1.17439 1.29038 1.14442 1.27629 0.87773 1.00981 0.97650 1.75036 1.22872 1.10811 1.05907 1.78657 0.97366 1.11548 1.19845 1.78844 1.21068 1.14328 0.92384 1.22092 0.99104 1.00097 0.95360 1.21578 0.98030 0.93344 1.02932 1.21612 0.97722 0.98183 0.98580 1.21690 0.99208 0.96683 0.98788 1.21605 0.95920 0.90660 1.05631 0.92632 0.95867 0.95774 0.92119 0.91790 0.77203 0.75379 0.87567 0.89805 0.92065 0.90181 0.91391 0.91219 0.90872 0.90578 0.89173 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.11 13.29 55.43 0.74 -24.38 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -13.95 9.11 -34.44 -0.31 -14.26 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.30 5.61 -4.04 -0.02 2.28 16 11 N -0.71 -10.75 5.32 -60.29 -0.32 -11.07 16 12 C 0.50 7.37 6.73 -10.98 -0.07 7.30 16 13 O -0.52 -9.35 15.98 5.56 0.09 -9.26 16 14 C 0.16 1.72 0.69 -132.97 -0.09 1.63 16 15 N -0.29 -3.53 2.27 -50.89 -0.12 -3.64 16 16 C 0.16 1.84 10.33 -90.39 -0.93 0.91 16 17 N -0.30 -4.40 12.36 29.59 0.37 -4.04 16 18 N -0.08 -1.27 13.43 60.35 0.81 -0.46 16 19 N -0.08 -1.15 10.60 60.35 0.64 -0.51 16 20 C -0.13 -0.98 4.32 -26.73 -0.12 -1.09 16 21 C -0.12 -0.82 5.75 -26.73 -0.15 -0.98 16 22 C -0.12 -0.84 5.92 -26.73 -0.16 -0.99 16 23 C -0.13 -1.08 5.71 -26.71 -0.15 -1.23 16 24 C -0.10 -1.03 3.70 -26.71 -0.10 -1.13 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.39 4.97 6.22 -40.82 -0.25 4.72 16 31 H 0.23 1.73 6.91 -52.48 -0.36 1.37 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.54 6.84 -51.93 -0.36 0.18 16 34 H 0.06 0.50 7.08 -51.93 -0.37 0.13 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.76 6.15 -51.93 -0.32 0.44 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.10 8.00 -51.93 -0.42 0.69 16 41 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -32.04 331.15 -6.02 -38.06 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.84 Total: 0.38 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -2.35 Total: -5.82 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 2.12 Total: -44.09 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.04 -6.02 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593124825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.852 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds