Wall clock time and date at job start Tue Mar 31 2020 03:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21278 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 180.02562 * 12 11 10 15 15 N 1.46500 * 109.47155 * 60.00161 * 14 12 11 16 16 C 1.34599 * 126.43799 * 284.71280 * 15 14 12 17 17 N 1.31072 * 106.68169 * 179.87776 * 16 15 14 18 18 N 1.28847 * 107.98681 * 0.38682 * 17 16 15 19 19 N 1.28741 * 109.39482 * 359.75182 * 18 17 16 20 20 C 1.52996 * 109.46946 * 299.99948 * 14 12 11 21 21 C 1.53005 * 109.47245 * 179.97438 * 20 14 12 22 22 C 1.53000 * 109.46632 * 59.99973 * 21 20 14 23 23 C 1.52996 * 109.47518 * 300.00318 * 22 21 20 24 24 C 1.52997 * 109.47084 * 180.02562 * 14 12 11 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 27 27 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 30 30 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 31 31 H 1.08006 * 126.65763 * 0.02562 * 16 15 14 32 32 H 1.09001 * 109.47372 * 299.99872 * 20 14 12 33 33 H 1.09004 * 109.47108 * 60.00127 * 20 14 12 34 34 H 1.09001 * 109.46962 * 300.00283 * 21 20 14 35 35 H 1.08992 * 109.47457 * 180.02562 * 21 20 14 36 36 H 1.09000 * 109.46968 * 180.02562 * 22 21 20 37 37 H 1.09001 * 109.47194 * 60.00452 * 22 21 20 38 38 H 1.09001 * 109.46993 * 299.99696 * 23 22 21 39 39 H 1.09000 * 109.47380 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.47045 * 299.99967 * 24 14 12 41 41 H 1.09001 * 109.47375 * 60.00042 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1868 -6.0980 0.0024 13 8 3.3996 -6.0979 0.0019 14 6 1.4333 -7.4031 0.0023 15 7 0.5915 -7.4809 -1.1941 16 6 -0.5636 -6.8224 -1.4031 17 7 -0.9864 -7.1727 -2.5933 18 7 -0.1396 -8.0095 -3.0860 19 7 0.8151 -8.1979 -2.2431 20 6 0.5533 -7.4839 1.2513 21 6 -0.2122 -8.8087 1.2510 22 6 0.7817 -9.9719 1.2512 23 6 1.6618 -9.8911 0.0023 24 6 2.4275 -8.5660 0.0035 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5564 0.8919 28 1 2.8714 -3.6047 -0.8890 29 1 2.8726 -3.6039 0.8910 30 1 0.5429 -4.9308 0.0020 31 1 -1.0469 -6.1364 -0.7232 32 1 1.1796 -7.4261 2.1415 33 1 -0.1551 -6.6554 1.2509 34 1 -0.8386 -8.8662 0.3608 35 1 -0.8395 -8.8661 2.1404 36 1 0.2364 -10.9157 1.2505 37 1 1.4081 -9.9145 2.1414 38 1 1.0354 -9.9486 -0.8879 39 1 2.3695 -10.7200 0.0022 40 1 3.0548 -8.5086 -0.8861 41 1 3.0536 -8.5079 0.8939 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593124825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:40 Heat of formation + Delta-G solvation = 44.810927 kcal Electronic energy + Delta-G solvation = -24389.989541 eV Core-core repulsion = 20920.217657 eV Total energy + Delta-G solvation = -3469.771884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.44434 -41.71397 -39.21346 -36.85737 -35.66889 -34.94150 -33.78311 -32.11837 -31.90086 -31.09428 -27.07063 -25.89494 -25.04688 -24.29691 -23.50515 -22.88446 -21.79131 -21.30453 -19.18189 -18.60257 -18.36102 -17.58643 -17.02159 -16.83897 -16.51964 -16.39405 -15.69494 -15.35369 -15.19197 -14.86935 -14.54134 -14.32886 -14.08861 -13.88737 -13.48169 -13.40925 -13.25663 -13.10608 -12.95731 -12.64147 -12.56078 -12.30262 -12.25243 -12.24228 -11.82961 -11.70395 -11.60562 -11.48938 -11.42299 -11.27832 -10.83739 -10.61868 -10.26618 -8.25146 -6.35080 0.08544 0.49660 1.11864 1.42148 1.43254 1.49088 1.51083 1.83044 2.40705 2.80082 3.10517 3.16408 3.23408 3.37654 3.62093 3.91537 3.99211 4.02605 4.17293 4.24009 4.33553 4.37222 4.41775 4.44480 4.56223 4.64510 4.78687 4.82408 4.91291 4.99509 5.01769 5.06084 5.11440 5.22315 5.24435 5.41291 5.43478 5.54649 5.75119 6.12123 6.23493 6.76102 6.85374 7.34447 7.46011 8.85990 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.022593 B = 0.003859 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.006772 B = 7253.602430 C = 7684.502961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.705 5.705 12 C 0.505 3.495 13 O -0.551 6.551 14 C 0.167 3.833 15 N -0.289 5.289 16 C 0.169 3.831 17 N -0.325 5.325 18 N -0.107 5.107 19 N -0.089 5.089 20 C -0.128 4.128 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.100 4.100 25 H 0.266 0.734 26 H 0.006 0.994 27 H 0.019 0.981 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.408 0.592 31 H 0.268 0.732 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.047 0.953 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -19.140 6.965 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.356 5.356 12 C 0.287 3.713 13 O -0.428 6.428 14 C 0.081 3.919 15 N -0.093 5.093 16 C -0.129 4.129 17 N -0.173 5.173 18 N -0.101 5.101 19 N -0.076 5.076 20 C -0.166 4.166 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.158 4.158 24 C -0.138 4.138 25 H 0.075 0.925 26 H 0.024 0.976 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.245 0.755 31 H 0.284 0.716 32 H 0.140 0.860 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.054 -19.693 5.726 20.536 hybrid contribution 0.034 1.752 0.382 1.794 sum -1.021 -17.941 6.108 18.979 Atomic orbital electron populations 1.70018 1.07361 1.28065 1.50713 1.25773 0.95728 1.02793 0.94413 0.85592 0.78404 0.78593 0.79039 1.19811 1.20692 1.19152 1.21405 0.93558 0.91927 1.51853 0.92391 1.19137 0.94175 0.91405 0.96738 1.21371 0.95193 0.81467 1.00409 1.46201 1.11100 1.05732 1.72521 1.20679 0.88043 0.85458 0.77080 1.90740 1.14631 1.87396 1.50019 1.21785 0.92114 0.95116 0.82904 1.48796 1.17608 1.28664 1.14253 1.28309 0.87177 1.00267 0.97187 1.74971 1.23501 1.11421 1.07397 1.78640 0.98102 1.12576 1.20741 1.78813 1.20978 1.14919 0.92875 1.22263 0.99174 1.01506 0.93674 1.21575 0.97879 0.92549 1.03381 1.21630 0.97646 0.98682 0.97927 1.21649 0.99258 0.95836 0.99094 1.21635 0.95844 0.91437 1.04897 0.92520 0.97566 0.96223 0.93898 0.91984 0.75547 0.71636 0.85986 0.88077 0.93440 0.87822 0.90557 0.89652 0.92904 0.89589 0.91788 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.77 13.29 21.45 0.28 -51.49 16 2 C 0.01 0.67 5.46 84.66 0.46 1.13 16 3 Si 0.96 42.15 29.54 68.60 2.03 44.18 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.55 -29.07 9.11 25.60 0.23 -28.83 16 8 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.02 1.06 5.09 29.85 0.15 1.21 16 10 C 0.14 5.33 5.61 86.38 0.48 5.81 16 11 N -0.70 -20.48 5.32 -463.05 -2.46 -22.94 16 12 C 0.50 14.26 6.73 87.66 0.59 14.85 16 13 O -0.55 -19.81 15.98 -3.02 -0.05 -19.86 16 14 C 0.17 3.36 0.69 2.86 0.00 3.37 16 15 N -0.29 -6.69 2.27 -314.92 -0.71 -7.40 16 16 C 0.17 3.67 10.33 180.27 1.86 5.54 16 17 N -0.33 -9.45 12.36 -60.29 -0.74 -10.19 16 18 N -0.11 -3.40 13.43 37.01 0.50 -2.90 16 19 N -0.09 -2.57 10.60 37.02 0.39 -2.18 16 20 C -0.13 -1.54 4.32 30.59 0.13 -1.41 16 21 C -0.12 -1.19 5.75 30.60 0.18 -1.02 16 22 C -0.12 -1.28 5.92 30.59 0.18 -1.10 16 23 C -0.12 -1.88 5.71 30.61 0.17 -1.71 16 24 C -0.10 -1.96 3.70 30.61 0.11 -1.84 16 25 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 26 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.41 9.50 6.22 -92.71 -0.58 8.92 16 31 H 0.27 3.26 6.91 -2.91 -0.02 3.24 16 32 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 0.89 6.84 -2.38 -0.02 0.88 16 34 H 0.05 0.64 7.08 -2.39 -0.02 0.63 16 35 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.05 1.06 6.15 -2.39 -0.01 1.05 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.59 8.00 -2.39 -0.02 1.57 16 41 H 0.11 1.87 8.10 -2.39 -0.02 1.85 16 Total: -1.00 -69.98 331.15 4.26 -65.71 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.47 Total: 11.08 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 4.56 Total: -4.01 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -2.75 Total: -97.10 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.05 Total: -19.86 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -69.98 4.26 -65.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593124825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.523 kcal (2) G-P(sol) polarization free energy of solvation -69.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds