Wall clock time and date at job start Tue Mar 31 2020 03:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48501 * 109.47062 * 239.99823 * 3 2 1 5 5 H 1.48505 * 109.46986 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46971 * 119.99632 * 3 2 1 7 7 C 1.38948 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99542 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00451 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00047 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00652 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99950 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47254 * 185.90802 * 12 10 9 14 14 C 1.53003 * 109.47090 * 177.56578 * 13 12 10 15 15 N 1.46495 * 109.47144 * 305.89693 * 14 13 12 16 16 C 1.34597 * 126.44057 * 122.48237 * 15 14 13 17 17 N 1.31067 * 106.68076 * 179.87257 * 16 15 14 18 18 N 1.28835 * 107.99346 * 0.38792 * 17 16 15 19 19 N 1.28741 * 109.39431 * 359.74985 * 18 17 16 20 20 C 1.52998 * 109.47230 * 297.56588 * 13 12 10 21 21 C 1.52997 * 109.47230 * 180.02562 * 20 13 12 22 22 C 1.53002 * 109.47269 * 299.99829 * 21 20 13 23 23 C 1.53009 * 109.46602 * 60.00232 * 22 21 20 24 24 C 1.52997 * 109.47119 * 299.99859 * 23 22 21 25 25 H 0.96996 * 119.99770 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99576 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.46987 * 65.91005 * 12 10 9 28 28 H 1.09000 * 109.47193 * 305.91137 * 12 10 9 29 29 H 1.09000 * 109.47060 * 65.89651 * 14 13 12 30 30 H 1.09007 * 109.47246 * 185.89393 * 14 13 12 31 31 H 1.08004 * 126.65904 * 0.02562 * 16 15 14 32 32 H 1.09001 * 109.46852 * 60.00111 * 20 13 12 33 33 H 1.09001 * 109.46911 * 300.00066 * 20 13 12 34 34 H 1.09001 * 109.47112 * 60.00270 * 21 20 13 35 35 H 1.08998 * 109.47191 * 179.97438 * 21 20 13 36 36 H 1.09002 * 109.47319 * 179.97438 * 22 21 20 37 37 H 1.08993 * 109.47131 * 300.00263 * 22 21 20 38 38 H 1.08993 * 109.47353 * 60.00166 * 23 22 21 39 39 H 1.09001 * 109.46657 * 180.02562 * 23 22 21 40 40 H 1.08998 * 109.47191 * 180.02562 * 24 23 22 41 41 H 1.09005 * 109.46995 * 300.00602 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2438 -4.8629 0.0011 13 6 2.2315 -6.0219 0.1495 14 6 1.4620 -7.3430 0.2110 15 7 0.4548 -7.2724 1.2725 16 6 -0.8716 -7.4501 1.1290 17 7 -1.4015 -7.3050 2.3190 18 7 -0.4512 -7.0432 3.1486 19 7 0.6719 -7.0228 2.5195 20 6 3.1806 -6.0400 -1.0504 21 6 4.1678 -7.1994 -0.9024 22 6 4.9760 -7.0201 0.3844 23 6 4.0268 -7.0021 1.5843 24 6 3.0395 -5.8427 1.4363 25 1 -0.4849 0.8400 -0.0004 26 1 0.3534 -2.3907 -0.0002 27 1 0.6986 -4.9680 -0.9368 28 1 0.5405 -4.8760 0.8337 29 1 0.9703 -7.5219 -0.7451 30 1 2.1551 -8.1577 0.4213 31 1 -1.3970 -7.6720 0.2118 32 1 3.7288 -5.0989 -1.0942 33 1 2.6049 -6.1683 -1.9671 34 1 3.6193 -8.1404 -0.8588 35 1 4.8437 -7.2126 -1.7574 36 1 5.6790 -7.8463 0.4901 37 1 5.5244 -6.0792 0.3408 38 1 3.4783 -7.9429 1.6279 39 1 4.6025 -6.8738 2.5010 40 1 2.3636 -5.8295 2.2913 41 1 3.5881 -4.9017 1.3926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593443296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:45 Heat of formation + Delta-G solvation = 70.072023 kcal Electronic energy + Delta-G solvation = -24809.495731 eV Core-core repulsion = 21340.819250 eV Total energy + Delta-G solvation = -3468.676481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.11718 -40.08562 -37.63856 -35.29495 -34.06597 -32.59515 -32.12356 -31.28901 -30.54052 -28.16886 -26.79031 -24.59630 -23.74427 -23.04344 -22.39170 -21.26898 -19.41476 -18.88343 -17.96250 -17.25465 -16.87421 -15.92588 -15.76739 -15.31523 -14.59895 -14.47510 -14.28452 -14.09691 -13.86469 -13.50681 -13.43563 -12.73494 -12.43621 -12.25510 -12.00711 -11.91254 -11.60822 -11.56617 -11.31596 -11.28938 -11.14727 -10.98731 -10.83113 -10.51029 -10.49108 -10.37721 -10.27510 -9.96898 -9.87055 -9.71305 -9.44341 -8.26046 -8.01362 -6.47557 -3.88908 1.35769 2.07176 2.35676 3.15471 3.22647 3.26297 3.79781 4.06510 4.18709 4.24591 4.49466 4.67036 4.75813 4.96488 5.03909 5.13023 5.18996 5.21469 5.40426 5.44615 5.46681 5.51122 5.62690 5.73495 5.77843 5.82176 5.89152 5.99720 6.05317 6.16235 6.19290 6.22361 6.39216 6.44176 6.51582 6.67478 6.87201 7.02546 7.49458 7.98553 8.53181 8.71477 9.10787 9.46781 9.97016 10.69729 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015339 B = 0.005216 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.922381 B = 5367.173969 C = 6575.873758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.303 4.303 8 H 0.104 0.896 9 N -0.557 5.557 10 C 0.443 3.557 11 O -0.584 6.584 12 C -0.127 4.127 13 C -0.038 4.038 14 C 0.111 3.889 15 N -0.296 5.296 16 C 0.150 3.850 17 N -0.310 5.310 18 N -0.087 5.087 19 N -0.078 5.078 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.112 4.112 24 C -0.131 4.131 25 H 0.273 0.727 26 H 0.392 0.608 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.230 0.770 32 H 0.116 0.884 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 -16.146 -3.753 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.122 0.878 9 N -0.192 5.192 10 C 0.230 3.770 11 O -0.471 6.471 12 C -0.167 4.167 13 C -0.040 4.040 14 C -0.009 4.009 15 N -0.098 5.098 16 C -0.149 4.149 17 N -0.159 5.159 18 N -0.081 5.081 19 N -0.065 5.065 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.169 4.169 25 H 0.083 0.917 26 H 0.225 0.775 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.246 0.754 32 H 0.134 0.866 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.727 -15.725 -2.357 16.133 hybrid contribution -0.381 0.646 -1.173 1.392 sum 2.346 -15.079 -3.530 15.663 Atomic orbital electron populations 1.69605 1.06008 1.28443 1.49887 1.25294 0.95619 0.99856 0.97048 0.85916 0.78796 0.80419 0.79091 1.19859 1.20919 1.19830 1.19663 0.93352 0.82218 1.48016 0.87820 1.41921 1.09224 1.04788 1.63228 1.19567 0.88219 0.84552 0.84696 1.90367 1.13639 1.86665 1.56420 1.21583 0.98220 0.94841 1.02095 1.20470 0.94628 0.89942 0.98940 1.22807 0.89217 1.02310 0.86599 1.48789 1.08672 1.44025 1.08306 1.27674 0.82611 1.03267 1.01337 1.74953 1.25124 1.17440 0.98380 1.78657 0.91571 1.15217 1.22618 1.78888 1.21636 1.16373 0.89576 1.21878 0.96988 1.02139 0.94540 1.21567 0.98236 0.97797 0.97923 1.21538 0.97737 1.01762 0.94614 1.21495 0.97408 0.98236 0.97841 1.22054 0.98354 1.01071 0.95398 0.91687 0.77530 0.90456 0.91557 0.87262 0.87104 0.75363 0.86624 0.92819 0.93115 0.92126 0.92942 0.91284 0.93262 0.92219 0.90764 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 8 H 0.10 2.91 7.16 -52.48 -0.38 2.54 16 9 N -0.56 -13.73 5.29 -10.96 -0.06 -13.79 16 10 C 0.44 9.65 7.17 -10.99 -0.08 9.57 16 11 O -0.58 -13.81 10.96 5.55 0.06 -13.75 16 12 C -0.13 -2.04 4.59 -27.88 -0.13 -2.17 16 13 C -0.04 -0.51 0.33 -154.51 -0.05 -0.56 16 14 C 0.11 1.07 4.74 -4.04 -0.02 1.05 16 15 N -0.30 -3.52 2.36 -62.55 -0.15 -3.67 16 16 C 0.15 1.62 12.79 -90.40 -1.16 0.46 16 17 N -0.31 -4.63 12.36 29.59 0.37 -4.26 16 18 N -0.09 -1.47 13.43 60.35 0.81 -0.66 16 19 N -0.08 -1.21 10.53 60.35 0.64 -0.57 16 20 C -0.12 -1.51 4.46 -26.73 -0.12 -1.63 16 21 C -0.12 -1.23 5.65 -26.73 -0.15 -1.38 16 22 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 23 C -0.11 -1.41 5.65 -26.73 -0.15 -1.56 16 24 C -0.13 -2.02 4.13 -26.73 -0.11 -2.13 16 25 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.13 7.35 -51.93 -0.38 0.75 16 29 H 0.11 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.11 0.95 4.83 -51.93 -0.25 0.70 16 31 H 0.23 1.23 8.06 -52.48 -0.42 0.80 16 32 H 0.12 1.97 5.52 -51.93 -0.29 1.68 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.43 6.57 -51.93 -0.34 0.09 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.56 6.30 -51.93 -0.33 0.23 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.25 5.63 -51.93 -0.29 0.96 16 41 H 0.11 2.04 5.52 -51.93 -0.29 1.75 16 LS Contribution 319.53 15.07 4.82 4.82 Total: -1.00 -31.46 319.53 -5.56 -37.02 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -5.38 Total: 10.45 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.36 Total: -7.73 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 2.33 Total: -46.61 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.06 Total: -13.75 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.46 -5.56 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593443296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.094 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds