Wall clock time and date at job start Tue Mar 31 2020 03:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48501 * 109.47062 * 239.99823 * 3 2 1 5 5 H 1.48505 * 109.46986 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46971 * 119.99632 * 3 2 1 7 7 C 1.38948 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99542 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00451 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00047 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00652 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99950 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47254 * 185.90802 * 12 10 9 14 14 C 1.53003 * 109.47090 * 177.56578 * 13 12 10 15 15 N 1.46495 * 109.47144 * 305.89693 * 14 13 12 16 16 C 1.34597 * 126.44057 * 122.48237 * 15 14 13 17 17 N 1.31067 * 106.68076 * 179.87257 * 16 15 14 18 18 N 1.28835 * 107.99346 * 0.38792 * 17 16 15 19 19 N 1.28741 * 109.39431 * 359.74985 * 18 17 16 20 20 C 1.52998 * 109.47230 * 297.56588 * 13 12 10 21 21 C 1.52997 * 109.47230 * 180.02562 * 20 13 12 22 22 C 1.53002 * 109.47269 * 299.99829 * 21 20 13 23 23 C 1.53009 * 109.46602 * 60.00232 * 22 21 20 24 24 C 1.52997 * 109.47119 * 299.99859 * 23 22 21 25 25 H 0.96996 * 119.99770 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99576 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.46987 * 65.91005 * 12 10 9 28 28 H 1.09000 * 109.47193 * 305.91137 * 12 10 9 29 29 H 1.09000 * 109.47060 * 65.89651 * 14 13 12 30 30 H 1.09007 * 109.47246 * 185.89393 * 14 13 12 31 31 H 1.08004 * 126.65904 * 0.02562 * 16 15 14 32 32 H 1.09001 * 109.46852 * 60.00111 * 20 13 12 33 33 H 1.09001 * 109.46911 * 300.00066 * 20 13 12 34 34 H 1.09001 * 109.47112 * 60.00270 * 21 20 13 35 35 H 1.08998 * 109.47191 * 179.97438 * 21 20 13 36 36 H 1.09002 * 109.47319 * 179.97438 * 22 21 20 37 37 H 1.08993 * 109.47131 * 300.00263 * 22 21 20 38 38 H 1.08993 * 109.47353 * 60.00166 * 23 22 21 39 39 H 1.09001 * 109.46657 * 180.02562 * 23 22 21 40 40 H 1.08998 * 109.47191 * 180.02562 * 24 23 22 41 41 H 1.09005 * 109.46995 * 300.00602 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2438 -4.8629 0.0011 13 6 2.2315 -6.0219 0.1495 14 6 1.4620 -7.3430 0.2110 15 7 0.4548 -7.2724 1.2725 16 6 -0.8716 -7.4501 1.1290 17 7 -1.4015 -7.3050 2.3190 18 7 -0.4512 -7.0432 3.1486 19 7 0.6719 -7.0228 2.5195 20 6 3.1806 -6.0400 -1.0504 21 6 4.1678 -7.1994 -0.9024 22 6 4.9760 -7.0201 0.3844 23 6 4.0268 -7.0021 1.5843 24 6 3.0395 -5.8427 1.4363 25 1 -0.4849 0.8400 -0.0004 26 1 0.3534 -2.3907 -0.0002 27 1 0.6986 -4.9680 -0.9368 28 1 0.5405 -4.8760 0.8337 29 1 0.9703 -7.5219 -0.7451 30 1 2.1551 -8.1577 0.4213 31 1 -1.3970 -7.6720 0.2118 32 1 3.7288 -5.0989 -1.0942 33 1 2.6049 -6.1683 -1.9671 34 1 3.6193 -8.1404 -0.8588 35 1 4.8437 -7.2126 -1.7574 36 1 5.6790 -7.8463 0.4901 37 1 5.5244 -6.0792 0.3408 38 1 3.4783 -7.9429 1.6279 39 1 4.6025 -6.8738 2.5010 40 1 2.3636 -5.8295 2.2913 41 1 3.5881 -4.9017 1.3926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593443296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:44 Heat of formation + Delta-G solvation = 49.304424 kcal Electronic energy + Delta-G solvation = -24810.396281 eV Core-core repulsion = 21340.819250 eV Total energy + Delta-G solvation = -3469.577031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.10079 -41.35308 -39.22953 -36.27449 -35.95572 -33.73029 -33.29920 -33.10830 -31.57062 -29.37663 -27.94960 -26.42800 -24.70900 -24.04977 -23.41494 -22.43191 -20.96887 -20.18914 -19.64900 -18.38887 -17.85941 -17.42706 -16.71364 -16.67154 -16.22748 -15.89753 -15.63651 -15.43004 -15.15900 -14.73605 -14.42846 -13.90851 -13.73340 -13.63613 -13.38680 -13.07386 -12.94159 -12.92297 -12.71115 -12.47244 -12.42799 -12.27875 -12.14757 -12.00070 -11.86015 -11.80042 -11.40062 -11.25011 -11.03846 -10.90316 -10.74953 -9.97869 -9.97270 -8.48755 -5.97142 0.42964 1.25307 1.35351 1.36340 1.38293 1.49042 2.04385 2.26804 3.07228 3.18590 3.46900 3.52912 3.58976 3.76526 3.93352 4.05624 4.16120 4.27918 4.32628 4.35761 4.41911 4.50616 4.58940 4.62710 4.68435 4.74784 4.81232 4.86594 4.94791 5.09164 5.23269 5.32659 5.36376 5.39798 5.43799 5.49413 5.56000 5.70575 5.81348 6.00246 6.57646 7.11299 7.55288 7.70420 8.10652 8.68681 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015339 B = 0.005216 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.922381 B = 5367.173969 C = 6575.873758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.016 4.016 3 Si 0.991 3.009 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.331 4.331 8 H 0.082 0.918 9 N -0.579 5.579 10 C 0.444 3.556 11 O -0.603 6.603 12 C -0.116 4.116 13 C -0.034 4.034 14 C 0.112 3.888 15 N -0.294 5.294 16 C 0.172 3.828 17 N -0.347 5.347 18 N -0.126 5.126 19 N -0.102 5.102 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.106 4.106 24 C -0.129 4.129 25 H 0.276 0.724 26 H 0.391 0.609 27 H 0.112 0.888 28 H 0.057 0.943 29 H 0.165 0.835 30 H 0.132 0.868 31 H 0.287 0.713 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 -18.801 -5.944 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.215 4.215 3 Si 0.815 3.185 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.460 4.460 8 H 0.100 0.900 9 N -0.215 5.215 10 C 0.232 3.768 11 O -0.490 6.490 12 C -0.156 4.156 13 C -0.035 4.035 14 C -0.007 4.007 15 N -0.096 5.096 16 C -0.126 4.126 17 N -0.195 5.195 18 N -0.120 5.120 19 N -0.089 5.089 20 C -0.153 4.153 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.143 4.143 24 C -0.167 4.167 25 H 0.086 0.914 26 H 0.224 0.776 27 H 0.130 0.870 28 H 0.076 0.924 29 H 0.182 0.818 30 H 0.149 0.851 31 H 0.302 0.698 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.201 -18.400 -4.548 19.082 hybrid contribution -0.132 1.412 -0.508 1.507 sum 2.069 -16.988 -5.056 17.845 Atomic orbital electron populations 1.69676 1.06941 1.29257 1.50631 1.26046 0.96487 1.02524 0.96459 0.85016 0.77764 0.76787 0.78959 1.19272 1.19677 1.20034 1.19635 0.92708 0.84039 1.49648 0.90016 1.42048 1.09104 1.05110 1.65248 1.20691 0.88365 0.85829 0.81935 1.90399 1.15098 1.87453 1.56051 1.21581 0.98262 0.92345 1.03388 1.20403 0.94245 0.91100 0.97795 1.23068 0.89603 0.99739 0.88274 1.48956 1.09625 1.43435 1.07596 1.28677 0.82012 1.00064 1.01800 1.74863 1.25657 1.18974 1.00021 1.78640 0.92381 1.16863 1.24124 1.78837 1.21623 1.17122 0.91332 1.21755 0.97301 1.00907 0.95337 1.21560 0.97904 0.98211 0.97183 1.21532 0.97953 1.01018 0.95102 1.21440 0.96992 0.97853 0.98013 1.21896 0.98498 0.99952 0.96336 0.91424 0.77608 0.87020 0.92431 0.81783 0.85075 0.69761 0.91628 0.90044 0.89276 0.91186 0.90619 0.94550 0.90837 0.93323 0.92686 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.97 13.05 21.66 0.28 -50.68 16 2 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 3 Si 0.99 43.45 29.55 68.60 2.03 45.47 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 8 H 0.08 4.87 7.16 -2.91 -0.02 4.84 16 9 N -0.58 -29.58 5.29 -306.99 -1.62 -31.21 16 10 C 0.44 19.86 7.17 87.66 0.63 20.49 16 11 O -0.60 -30.03 10.96 -3.06 -0.03 -30.06 16 12 C -0.12 -3.56 4.59 29.85 0.14 -3.43 16 13 C -0.03 -0.82 0.33 -52.18 -0.02 -0.84 16 14 C 0.11 1.56 4.74 86.38 0.41 1.97 16 15 N -0.29 -5.97 2.36 -351.82 -0.83 -6.80 16 16 C 0.17 3.03 12.79 180.27 2.31 5.33 16 17 N -0.35 -9.78 12.36 -60.30 -0.74 -10.53 16 18 N -0.13 -4.24 13.43 37.01 0.50 -3.74 16 19 N -0.10 -3.04 10.53 37.02 0.39 -2.65 16 20 C -0.12 -2.66 4.46 30.59 0.14 -2.52 16 21 C -0.11 -1.90 5.65 30.59 0.17 -1.73 16 22 C -0.12 -2.55 5.92 30.60 0.18 -2.37 16 23 C -0.11 -2.53 5.65 30.60 0.17 -2.36 16 24 C -0.13 -4.02 4.13 30.59 0.13 -3.89 16 25 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 26 H 0.39 19.59 7.90 -92.71 -0.73 18.86 16 27 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.06 1.92 7.35 -2.39 -0.02 1.90 16 29 H 0.16 0.63 8.08 -2.39 -0.02 0.61 16 30 H 0.13 1.41 4.83 -2.38 -0.01 1.40 16 31 H 0.29 1.15 8.06 -2.91 -0.02 1.12 16 32 H 0.07 2.24 5.52 -2.39 -0.01 2.23 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 0.91 6.57 -2.39 -0.02 0.89 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.42 6.30 -2.39 -0.02 1.41 16 39 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.05 1.92 5.63 -2.39 -0.01 1.90 16 41 H 0.05 2.27 5.52 -2.38 -0.01 2.26 16 Total: -1.00 -76.59 319.53 5.84 -70.75 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.34 Total: 27.08 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 5.53 Total: -7.64 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -2.03 Total: -105.61 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.03 Total: -30.06 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -76.59 5.84 -70.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593443296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.058 kcal (2) G-P(sol) polarization free energy of solvation -76.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds