Wall clock time and date at job start Tue Mar 31 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.47074 * 120.88261 * 359.72571 * 13 11 10 15 15 C 1.53695 * 108.27576 * 128.74910 * 14 13 11 16 16 N 1.46904 * 109.25420 * 54.08473 * 15 14 13 17 17 C 1.46897 * 110.99901 * 172.60509 * 16 15 14 18 18 C 1.50703 * 109.47486 * 314.30250 * 17 16 15 19 19 N 1.33238 * 125.52703 * 89.99348 * 18 17 16 20 20 C 1.30836 * 109.82911 * 180.02562 * 19 18 17 21 21 N 1.34428 * 108.07612 * 0.02562 * 20 19 18 22 22 H 0.97004 * 126.82679 * 179.97438 * 21 20 19 23 23 N 1.30712 * 125.52413 * 269.70042 * 18 17 16 24 24 C 1.46897 * 111.26792 * 296.75440 * 16 15 14 25 25 C 1.47075 * 120.87669 * 180.02562 * 13 11 10 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.08994 * 109.63016 * 248.52290 * 14 13 11 32 32 H 1.09001 * 109.62513 * 9.10199 * 14 13 11 33 33 H 1.08997 * 109.65385 * 294.08176 * 15 14 13 34 34 H 1.09004 * 109.44306 * 173.95783 * 15 14 13 35 35 H 1.09001 * 109.47353 * 74.30369 * 17 16 15 36 36 H 1.09003 * 109.47189 * 194.30283 * 17 16 15 37 37 H 1.08000 * 125.96331 * 179.97438 * 20 19 18 38 38 H 1.09001 * 109.49120 * 303.14081 * 24 16 15 39 39 H 1.09003 * 109.48945 * 183.06528 * 24 16 15 40 40 H 1.09003 * 109.63301 * 350.89825 * 25 13 11 41 41 H 1.09001 * 109.63030 * 111.28989 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 3.6360 -6.1571 -0.0064 15 6 4.1094 -7.0751 1.1318 16 7 3.4678 -8.3893 0.9929 17 6 4.0235 -9.3507 1.9545 18 6 5.5272 -9.2504 1.9534 19 7 6.2501 -8.4471 2.7328 20 6 7.5230 -8.6082 2.4769 21 7 7.6401 -9.5349 1.5101 22 1 8.4633 -9.8613 1.1142 23 7 6.3339 -9.9411 1.1915 24 6 2.0091 -8.2876 1.1332 25 6 1.4497 -7.4192 0.0008 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 3.9917 -6.5409 -0.9625 32 1 4.0185 -5.1487 0.1517 33 1 3.8380 -6.6377 2.0926 34 1 5.1919 -7.1913 1.0778 35 1 3.6452 -9.1269 2.9520 36 1 3.7266 -10.3606 1.6715 37 1 8.3376 -8.0870 2.9578 38 1 1.7670 -7.8333 2.0940 39 1 1.5683 -9.2831 1.0798 40 1 0.3859 -7.2458 0.1636 41 1 1.5967 -7.9204 -0.9559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593855246.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:56 Heat of formation + Delta-G solvation = 63.777750 kcal Electronic energy + Delta-G solvation = -23257.893866 eV Core-core repulsion = 19788.944445 eV Total energy + Delta-G solvation = -3468.949421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.52121 -39.84213 -37.90796 -34.79504 -33.48742 -32.85594 -31.81936 -31.40487 -30.54678 -28.59867 -26.00449 -24.80743 -23.84035 -23.06006 -21.90574 -20.66767 -20.30036 -18.70368 -18.40388 -17.11655 -16.33107 -15.80296 -15.68988 -15.38835 -15.22285 -15.07912 -14.80857 -14.60949 -14.35742 -13.62521 -13.33539 -13.00358 -12.53218 -12.42653 -12.28842 -12.04350 -11.89211 -11.44880 -11.32183 -11.21136 -11.00589 -10.90569 -10.55743 -10.44980 -10.41246 -10.10422 -9.91939 -9.57592 -9.13319 -8.94343 -8.71366 -8.30891 -8.23096 -5.92988 -3.97205 1.22589 2.27648 2.43555 3.26624 3.30763 3.35348 3.41409 3.44196 3.62885 3.88623 4.26344 4.49486 4.57932 4.77275 4.95537 5.03802 5.15035 5.24302 5.31785 5.37665 5.41868 5.45899 5.55936 5.69736 5.81809 5.84153 5.93390 5.98086 6.06556 6.25326 6.26582 6.61153 6.67630 6.75205 6.82287 6.96138 7.69855 7.77821 7.82110 7.90483 8.10899 8.42145 8.79633 9.11323 9.66054 11.18038 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.003181 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.615923 B = 8799.279196 C = 9924.106052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.513 3.487 12 O -0.535 6.535 13 N -0.627 5.627 14 C 0.116 3.884 15 C 0.044 3.956 16 N -0.531 5.531 17 C 0.147 3.853 18 C 0.232 3.768 19 N -0.540 5.540 20 C 0.262 3.738 21 N -0.486 5.486 22 H 0.442 0.558 23 N -0.297 5.297 24 C 0.044 3.956 25 C 0.117 3.883 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.223 0.777 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.323 -22.197 4.270 27.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.304 3.696 12 O -0.410 6.410 13 N -0.364 5.364 14 C -0.008 4.008 15 C -0.084 4.084 16 N -0.257 5.257 17 C 0.017 3.983 18 C -0.051 4.051 19 N -0.268 5.268 20 C -0.037 4.037 21 N -0.205 5.205 22 H 0.288 0.712 23 N -0.127 5.127 24 C -0.084 4.084 25 C -0.006 4.006 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.239 0.761 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.146 -22.515 3.554 27.367 hybrid contribution 1.367 1.051 0.667 1.849 sum 16.513 -21.464 4.221 27.408 Atomic orbital electron populations 1.70004 1.06051 1.26537 1.50268 1.25027 0.94822 0.99204 0.95352 0.86594 0.79776 0.83549 0.78043 1.20690 1.21240 1.19887 1.21222 0.92904 0.91026 1.51276 0.92640 1.18900 0.93170 0.89355 0.98591 1.21875 1.00728 0.92017 1.02204 1.21575 0.88397 0.85437 0.74200 1.90652 1.14369 1.87149 1.48858 1.48358 1.06518 1.05872 1.75609 1.21862 0.80135 1.00420 0.98384 1.22617 0.99172 0.88460 0.98200 1.62098 1.04833 1.09017 1.49790 1.20356 0.83452 0.98400 0.96065 1.24024 0.97593 0.91993 0.91443 1.70512 1.01806 1.26373 1.28131 1.26146 0.96467 0.91227 0.89868 1.48195 1.08472 1.32530 1.31260 0.71248 1.78072 0.87399 1.23830 1.23354 1.22528 0.86666 1.00647 0.98585 1.21556 0.97832 0.83362 0.97886 0.92974 0.95844 0.95844 0.90353 0.90324 0.91202 0.88739 0.93448 0.90012 0.91691 0.88195 0.76050 0.93787 0.89442 0.88603 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.77 13.29 55.43 0.74 -27.03 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -15.13 9.11 -34.44 -0.31 -15.45 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 10 C -0.13 -2.72 4.00 -27.88 -0.11 -2.83 16 11 C 0.51 10.47 7.71 -10.98 -0.08 10.38 16 12 O -0.53 -13.02 15.43 5.56 0.09 -12.93 16 13 N -0.63 -9.93 3.00 -172.16 -0.52 -10.44 16 14 C 0.12 1.51 6.53 -3.37 -0.02 1.49 16 15 C 0.04 0.53 5.15 -3.46 -0.02 0.51 16 16 N -0.53 -5.88 4.77 -235.43 -1.12 -7.00 16 17 C 0.15 1.42 5.90 -4.98 -0.03 1.39 16 18 C 0.23 2.44 5.91 -156.86 -0.93 1.51 16 19 N -0.54 -5.38 10.23 -11.98 -0.12 -5.51 16 20 C 0.26 1.59 13.13 -90.65 -1.19 0.40 16 21 N -0.49 -3.01 7.45 29.53 0.22 -2.79 16 22 H 0.44 1.09 8.96 -182.33 -1.63 -0.55 16 23 N -0.30 -3.04 12.80 32.42 0.41 -2.62 16 24 C 0.04 0.48 5.58 -3.68 -0.02 0.46 16 25 C 0.12 1.57 6.60 -3.58 -0.02 1.55 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.08 1.53 7.67 -51.93 -0.40 1.13 16 30 H 0.08 1.53 7.99 -51.93 -0.41 1.11 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.21 6.02 -51.93 -0.31 0.90 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.98 5.87 -51.93 -0.30 0.67 16 35 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.22 0.27 8.06 -52.49 -0.42 -0.15 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 40 H 0.10 1.42 7.06 -51.93 -0.37 1.06 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 337.94 15.07 5.09 5.09 Total: -1.00 -37.88 337.94 -10.38 -48.26 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -7.19 Total: -3.80 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.96 Total: 1.93 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.39 Total: -55.40 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -37.88 -10.38 -48.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593855246.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.042 kcal (2) G-P(sol) polarization free energy of solvation -37.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds