Wall clock time and date at job start Tue Mar 31 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34952 * 125.52918 * 2 1 4 4 C 1.41208 * 108.24501 * 179.97438 * 3 2 1 5 5 N 1.32939 * 126.37596 * 179.97438 * 4 3 2 6 6 C 1.33822 * 120.00370 * 0.02698 * 5 4 3 7 7 O 1.21846 * 120.00140 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00418 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00434 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.28329 * 32.87688 * 9 8 6 11 11 C 1.54263 * 110.32230 * 154.99904 * 9 8 6 12 12 C 1.54381 * 105.05654 * 118.89680 * 11 9 8 13 13 N 1.48560 * 104.59399 * 23.85392 * 12 11 9 14 14 C 1.48561 * 104.22391 * 320.51317 * 13 12 11 15 15 N 1.37415 * 107.24611 * 359.75578 * 4 3 2 16 16 H 0.97001 * 126.36891 * 180.27106 * 15 4 3 17 17 N 1.36454 * 125.52443 * 179.97438 * 2 1 3 18 18 C 1.46500 * 125.85413 * 359.97438 * 17 2 1 19 19 C 1.50706 * 109.47299 * 84.99398 * 18 17 2 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 H 1.09002 * 109.47130 * 270.02971 * 1 2 3 28 28 H 1.09004 * 109.46895 * 30.02296 * 1 2 3 29 29 H 1.09000 * 109.47638 * 150.02367 * 1 2 3 30 30 H 1.08004 * 125.88161 * 0.02562 * 3 2 1 31 31 H 0.97002 * 119.99647 * 359.97438 * 8 6 5 32 32 H 1.08998 * 110.32187 * 237.79108 * 11 9 8 33 33 H 1.08997 * 110.32489 * 359.97438 * 11 9 8 34 34 H 1.09002 * 110.40644 * 142.62726 * 12 11 9 35 35 H 1.08991 * 110.41052 * 264.95145 * 12 11 9 36 36 H 1.00905 * 111.00227 * 80.07208 * 13 12 11 37 37 H 1.08998 * 110.40821 * 280.70759 * 14 13 12 38 38 H 1.08992 * 110.41110 * 158.26389 * 14 13 12 39 39 H 1.09004 * 109.47078 * 325.00159 * 18 17 2 40 40 H 1.08993 * 109.47364 * 204.99931 * 18 17 2 41 41 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2912 1.0983 0.0000 4 6 3.6395 0.6787 0.0006 5 7 4.7103 1.4665 0.0003 6 6 4.5626 2.7965 -0.0001 7 8 3.4466 3.2856 0.0003 8 7 5.6483 3.5952 0.0001 9 6 5.4866 5.0512 0.0003 10 1 4.5914 5.3320 0.5552 11 6 6.7305 5.7284 0.6119 12 6 7.3023 6.6118 -0.5177 13 7 6.1441 6.8744 -1.4103 14 6 5.4116 5.5825 -1.4473 15 7 3.6386 -0.6954 0.0066 16 1 4.4192 -1.2711 0.0120 17 7 2.2998 -1.1106 0.0005 18 6 1.8320 -2.4989 0.0016 19 6 1.5536 -2.9364 -1.4134 20 1 1.7099 -2.2491 -2.2317 21 6 1.0993 -4.2139 -1.6633 22 7 0.9140 -5.0525 -0.6673 23 14 0.7549 -4.7564 -3.4173 24 1 0.2863 -6.1655 -3.4167 25 1 -0.2938 -3.8862 -4.0076 26 1 1.9983 -4.6485 -4.2219 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 1.9469 2.1220 0.0004 31 1 6.5367 3.2059 0.0010 32 1 6.4455 6.3430 1.4658 33 1 7.4610 4.9774 0.9124 34 1 7.6882 7.5465 -0.1107 35 1 8.0867 6.0800 -1.0560 36 1 5.5614 7.6101 -1.0396 37 1 5.8986 4.8888 -2.1326 38 1 4.3740 5.7422 -1.7403 39 1 0.9184 -2.5739 0.5915 40 1 2.5987 -3.1403 0.4361 41 1 1.0931 -4.7709 0.2435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595231640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:49 Heat of formation + Delta-G solvation = 69.154061 kcal Electronic energy + Delta-G solvation = -23024.011013 eV Core-core repulsion = 19555.294726 eV Total energy + Delta-G solvation = -3468.716286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -40.94297 -39.51495 -37.95641 -34.69662 -33.55669 -33.21960 -32.26330 -30.58154 -29.45982 -27.98164 -27.54856 -26.15942 -23.35045 -22.28395 -21.89638 -20.42763 -20.02114 -19.60987 -17.92685 -17.08507 -16.65714 -16.17052 -15.92084 -15.22277 -14.83329 -14.47508 -14.28951 -14.06631 -13.96819 -13.62004 -13.12373 -12.95931 -12.88813 -12.63449 -12.55566 -12.18223 -11.97504 -11.92317 -11.63273 -11.38584 -11.31342 -10.96770 -10.92887 -10.35345 -10.19848 -9.74103 -9.25343 -9.11349 -8.91405 -8.86774 -8.43050 -8.38973 -7.01539 -6.73757 -4.68540 1.69930 1.97816 3.06484 3.20944 3.23095 3.41383 3.52353 4.12290 4.17203 4.37337 4.48573 4.64459 4.76177 4.86613 4.94425 4.97493 5.21834 5.35860 5.43880 5.50910 5.63328 5.66825 5.75105 5.78792 5.85399 6.00278 6.07838 6.10620 6.20377 6.31879 6.40009 6.42401 6.68968 7.06446 7.12770 7.28662 7.32964 7.58079 7.71911 7.99925 8.25277 8.29490 8.41560 9.02067 9.57885 10.48888 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030565 B = 0.002844 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.852950 B = 9841.221092 C =10008.671238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.189 3.811 3 C -0.332 4.332 4 C 0.490 3.510 5 N -0.713 5.713 6 C 0.685 3.315 7 O -0.632 6.632 8 N -0.721 5.721 9 C 0.132 3.868 10 H 0.089 0.911 11 C -0.166 4.166 12 C 0.040 3.960 13 N -0.669 5.669 14 C 0.029 3.971 15 N -0.472 5.472 16 H 0.444 0.556 17 N -0.344 5.344 18 C 0.246 3.754 19 C -0.633 4.633 20 H 0.064 0.936 21 C 0.032 3.968 22 N -0.894 5.894 23 Si 1.074 2.926 24 H -0.278 1.278 25 H -0.282 1.282 26 H -0.284 1.284 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.184 0.816 31 H 0.396 0.604 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.336 0.664 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.040 0.960 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 14.567 2.942 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.064 3.936 3 C -0.364 4.364 4 C 0.237 3.763 5 N -0.478 5.478 6 C 0.384 3.616 7 O -0.514 6.514 8 N -0.375 5.375 9 C 0.023 3.977 10 H 0.107 0.893 11 C -0.206 4.206 12 C -0.090 4.090 13 N -0.296 5.296 14 C -0.102 4.102 15 N -0.194 5.194 16 H 0.291 0.709 17 N -0.131 5.131 18 C 0.129 3.871 19 C -0.671 4.671 20 H 0.082 0.918 21 C -0.175 4.175 22 N -0.528 5.528 23 Si 0.900 3.100 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.211 1.211 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.201 0.799 31 H 0.230 0.770 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.151 0.849 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.825 12.975 1.371 14.288 hybrid contribution 0.505 0.901 1.884 2.149 sum 6.330 13.876 3.255 15.595 Atomic orbital electron populations 1.20645 0.86499 1.05067 1.03514 1.21280 0.94420 0.85453 0.92457 1.22200 0.91099 1.00235 1.22909 1.18674 0.91100 0.81946 0.84599 1.68037 1.28666 1.03945 1.47130 1.16634 0.83074 0.84912 0.76947 1.90723 1.24365 1.78628 1.57723 1.44741 1.08368 1.04175 1.80264 1.22087 0.98298 0.80553 0.96763 0.89305 1.23181 0.97844 1.00230 0.99339 1.23003 0.94973 0.99059 0.91953 1.63302 1.09862 1.06690 1.49729 1.23521 0.99158 0.91003 0.96555 1.44351 0.98681 1.04979 1.71417 0.70919 1.47509 0.92722 1.07621 1.65210 1.20000 0.95500 0.71614 0.99964 1.22261 1.51610 1.01762 0.91453 0.91770 1.25958 0.92904 0.92202 1.06436 1.70883 1.43954 1.37444 1.00471 0.83443 0.77009 0.76653 0.72899 1.20299 1.20834 1.21054 0.89942 0.89232 0.89140 0.79941 0.76969 0.90786 0.90294 0.90789 0.90193 0.84861 0.89916 0.90300 0.92657 0.94251 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.92 36.00 0.36 -1.07 16 2 C 0.19 3.46 6.92 -81.71 -0.57 2.90 16 3 C -0.33 -6.54 9.41 -39.62 -0.37 -6.91 16 4 C 0.49 9.89 8.07 -155.29 -1.25 8.64 16 5 N -0.71 -14.39 10.59 -15.79 -0.17 -14.56 16 6 C 0.69 13.50 8.47 -87.77 -0.74 12.75 16 7 O -0.63 -13.75 12.91 5.06 0.07 -13.68 16 8 N -0.72 -11.00 5.07 -57.52 -0.29 -11.29 16 9 C 0.13 1.67 3.41 -66.55 -0.23 1.44 16 10 H 0.09 1.28 7.56 -51.93 -0.39 0.89 16 11 C -0.17 -1.53 6.76 -25.35 -0.17 -1.70 16 12 C 0.04 0.34 7.47 -2.18 -0.02 0.32 16 13 N -0.67 -6.79 7.62 -109.67 -0.84 -7.62 16 14 C 0.03 0.35 7.18 -2.18 -0.02 0.34 16 15 N -0.47 -8.82 7.38 31.33 0.23 -8.59 16 16 H 0.44 7.31 8.96 -182.55 -1.64 5.67 16 17 N -0.34 -6.71 3.63 -58.04 -0.21 -6.92 16 18 C 0.25 5.20 5.02 -5.19 -0.03 5.17 16 19 C -0.63 -15.30 9.39 -34.44 -0.32 -15.62 16 20 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 21 C 0.03 0.79 5.46 -17.82 -0.10 0.69 16 22 N -0.89 -23.42 13.65 55.43 0.76 -22.67 16 23 Si 1.07 22.46 29.90 -169.99 -5.08 17.37 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 1.41 7.80 -51.93 -0.40 1.01 16 30 H 0.18 3.75 5.77 -52.48 -0.30 3.45 16 31 H 0.40 5.39 8.46 -40.82 -0.35 5.05 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.70 7.67 -51.93 -0.40 0.30 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.34 2.89 8.92 -39.29 -0.35 2.54 16 37 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.15 7.75 -51.93 -0.40 0.75 16 40 H 0.04 0.85 8.00 -51.93 -0.42 0.43 16 41 H 0.27 6.83 7.22 -40.82 -0.29 6.54 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -30.05 342.40 -10.93 -40.99 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -7.10 Total: 14.86 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -3.46 Total: 6.94 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -0.52 Total: -71.64 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.07 Total: -13.68 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.08 Total: 17.37 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.05 -10.93 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595231640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.140 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds