Wall clock time and date at job start Tue Mar 31 2020 03:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34952 * 125.52918 * 2 1 4 4 C 1.41208 * 108.24501 * 179.97438 * 3 2 1 5 5 N 1.32939 * 126.37596 * 179.97438 * 4 3 2 6 6 C 1.33822 * 120.00370 * 0.02698 * 5 4 3 7 7 O 1.21846 * 120.00140 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00418 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00434 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.28329 * 32.87688 * 9 8 6 11 11 C 1.54263 * 110.32230 * 154.99904 * 9 8 6 12 12 C 1.54381 * 105.05654 * 118.89680 * 11 9 8 13 13 N 1.48560 * 104.59399 * 23.85392 * 12 11 9 14 14 C 1.48561 * 104.22391 * 320.51317 * 13 12 11 15 15 N 1.37415 * 107.24611 * 359.75578 * 4 3 2 16 16 H 0.97001 * 126.36891 * 180.27106 * 15 4 3 17 17 N 1.36454 * 125.52443 * 179.97438 * 2 1 3 18 18 C 1.46500 * 125.85413 * 359.97438 * 17 2 1 19 19 C 1.50706 * 109.47299 * 84.99398 * 18 17 2 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 H 1.09002 * 109.47130 * 270.02971 * 1 2 3 28 28 H 1.09004 * 109.46895 * 30.02296 * 1 2 3 29 29 H 1.09000 * 109.47638 * 150.02367 * 1 2 3 30 30 H 1.08004 * 125.88161 * 0.02562 * 3 2 1 31 31 H 0.97002 * 119.99647 * 359.97438 * 8 6 5 32 32 H 1.08998 * 110.32187 * 237.79108 * 11 9 8 33 33 H 1.08997 * 110.32489 * 359.97438 * 11 9 8 34 34 H 1.09002 * 110.40644 * 142.62726 * 12 11 9 35 35 H 1.08991 * 110.41052 * 264.95145 * 12 11 9 36 36 H 1.00905 * 111.00227 * 80.07208 * 13 12 11 37 37 H 1.08998 * 110.40821 * 280.70759 * 14 13 12 38 38 H 1.08992 * 110.41110 * 158.26389 * 14 13 12 39 39 H 1.09004 * 109.47078 * 325.00159 * 18 17 2 40 40 H 1.08993 * 109.47364 * 204.99931 * 18 17 2 41 41 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2912 1.0983 0.0000 4 6 3.6395 0.6787 0.0006 5 7 4.7103 1.4665 0.0003 6 6 4.5626 2.7965 -0.0001 7 8 3.4466 3.2856 0.0003 8 7 5.6483 3.5952 0.0001 9 6 5.4866 5.0512 0.0003 10 1 4.5914 5.3320 0.5552 11 6 6.7305 5.7284 0.6119 12 6 7.3023 6.6118 -0.5177 13 7 6.1441 6.8744 -1.4103 14 6 5.4116 5.5825 -1.4473 15 7 3.6386 -0.6954 0.0066 16 1 4.4192 -1.2711 0.0120 17 7 2.2998 -1.1106 0.0005 18 6 1.8320 -2.4989 0.0016 19 6 1.5536 -2.9364 -1.4134 20 1 1.7099 -2.2491 -2.2317 21 6 1.0993 -4.2139 -1.6633 22 7 0.9140 -5.0525 -0.6673 23 14 0.7549 -4.7564 -3.4173 24 1 0.2863 -6.1655 -3.4167 25 1 -0.2938 -3.8862 -4.0076 26 1 1.9983 -4.6485 -4.2219 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 1.9469 2.1220 0.0004 31 1 6.5367 3.2059 0.0010 32 1 6.4455 6.3430 1.4658 33 1 7.4610 4.9774 0.9124 34 1 7.6882 7.5465 -0.1107 35 1 8.0867 6.0800 -1.0560 36 1 5.5614 7.6101 -1.0396 37 1 5.8986 4.8888 -2.1326 38 1 4.3740 5.7422 -1.7403 39 1 0.9184 -2.5739 0.5915 40 1 2.5987 -3.1403 0.4361 41 1 1.0931 -4.7709 0.2435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595231640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:47 Heat of formation + Delta-G solvation = 46.462498 kcal Electronic energy + Delta-G solvation = -23024.994993 eV Core-core repulsion = 19555.294726 eV Total energy + Delta-G solvation = -3469.700266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.46381 -40.75452 -39.13086 -36.37495 -35.01720 -34.68379 -33.73756 -32.20254 -30.32061 -29.10169 -28.86494 -27.81562 -25.10853 -23.60780 -22.87384 -21.55985 -21.40119 -21.05134 -19.61996 -18.61709 -17.92472 -17.47554 -17.12035 -16.75279 -16.10769 -15.94520 -15.75788 -15.57513 -14.90630 -14.86057 -14.64498 -14.34877 -14.33103 -13.90175 -13.76601 -13.72890 -13.39715 -13.01398 -12.87469 -12.60746 -12.58137 -12.08724 -11.98644 -11.89786 -11.78106 -11.26957 -10.86964 -10.73808 -10.40013 -10.30085 -9.97746 -9.51244 -8.89051 -8.36830 -6.64093 0.18442 0.46493 1.53286 1.55704 1.56577 1.78267 2.23926 2.45305 2.86456 2.99312 3.06090 3.34279 3.60583 3.66972 3.96245 4.05417 4.09026 4.20702 4.31835 4.42397 4.45695 4.49006 4.62552 4.68201 4.75837 4.87011 4.90433 4.99083 5.01389 5.04116 5.13036 5.24077 5.45296 5.53197 5.75655 5.90086 5.96065 6.05878 6.29786 6.38677 6.41229 6.83089 6.95836 7.11934 8.07521 8.55516 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030565 B = 0.002844 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.852950 B = 9841.221092 C =10008.671238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.196 3.804 3 C -0.345 4.345 4 C 0.475 3.525 5 N -0.721 5.721 6 C 0.672 3.328 7 O -0.659 6.659 8 N -0.709 5.709 9 C 0.127 3.873 10 H 0.069 0.931 11 C -0.155 4.155 12 C 0.043 3.957 13 N -0.671 5.671 14 C 0.036 3.964 15 N -0.468 5.468 16 H 0.451 0.549 17 N -0.351 5.351 18 C 0.256 3.744 19 C -0.636 4.636 20 H 0.049 0.951 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 1.111 2.889 24 H -0.281 1.281 25 H -0.268 1.268 26 H -0.279 1.279 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.175 0.825 31 H 0.405 0.595 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.346 0.654 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 15.622 2.932 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.071 3.929 3 C -0.378 4.378 4 C 0.222 3.778 5 N -0.486 5.486 6 C 0.371 3.629 7 O -0.543 6.543 8 N -0.363 5.363 9 C 0.019 3.981 10 H 0.087 0.913 11 C -0.194 4.194 12 C -0.086 4.086 13 N -0.299 5.299 14 C -0.096 4.096 15 N -0.192 5.192 16 H 0.300 0.700 17 N -0.138 5.138 18 C 0.138 3.862 19 C -0.674 4.674 20 H 0.068 0.932 21 C -0.208 4.208 22 N -0.553 5.553 23 Si 0.933 3.067 24 H -0.206 1.206 25 H -0.193 1.193 26 H -0.204 1.204 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.098 0.902 30 H 0.192 0.808 31 H 0.241 0.759 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.163 0.837 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.336 14.072 1.372 15.494 hybrid contribution 0.399 0.656 1.910 2.058 sum 6.734 14.728 3.282 16.524 Atomic orbital electron populations 1.20813 0.83735 1.05530 1.05365 1.21835 0.95979 0.84455 0.90626 1.22111 0.91286 1.00218 1.24164 1.18897 0.91578 0.82423 0.84904 1.68103 1.28768 1.04286 1.47398 1.16961 0.83752 0.85089 0.77095 1.90697 1.25600 1.78961 1.59062 1.44736 1.07698 1.04987 1.78832 1.22264 0.99453 0.79149 0.97237 0.91262 1.23129 0.96111 1.00341 0.99848 1.23077 0.94146 1.00146 0.91256 1.63276 1.10211 1.05699 1.50694 1.23312 0.98452 0.91970 0.95857 1.44328 0.98766 1.04696 1.71408 0.70013 1.47443 0.93224 1.07457 1.65664 1.19753 0.95670 0.72262 0.98475 1.22413 1.51025 1.01460 0.92475 0.93221 1.27008 0.92526 0.92549 1.08687 1.70963 1.45650 1.38040 1.00682 0.82958 0.77472 0.76375 0.69914 1.20575 1.19318 1.20431 0.87286 0.87120 0.90156 0.80812 0.75943 0.89317 0.89514 0.88214 0.90164 0.83737 0.91284 0.91772 0.91866 0.94527 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.62 9.92 71.23 0.71 -1.92 16 2 C 0.20 7.02 6.92 41.08 0.28 7.31 16 3 C -0.35 -13.62 9.41 22.24 0.21 -13.41 16 4 C 0.48 19.27 8.07 133.95 1.08 20.35 16 5 N -0.72 -29.24 10.59 -322.56 -3.42 -32.65 16 6 C 0.67 26.71 8.47 179.35 1.52 28.23 16 7 O -0.66 -29.18 12.91 -4.81 -0.06 -29.24 16 8 N -0.71 -21.41 5.07 -454.05 -2.30 -23.71 16 9 C 0.13 3.15 3.41 45.89 0.16 3.30 16 10 H 0.07 2.01 7.56 -2.39 -0.02 2.00 16 11 C -0.15 -2.52 6.76 31.49 0.21 -2.30 16 12 C 0.04 0.62 7.47 86.45 0.65 1.27 16 13 N -0.67 -12.54 7.62 -500.87 -3.82 -16.36 16 14 C 0.04 0.87 7.18 86.45 0.62 1.49 16 15 N -0.47 -17.46 7.38 -54.79 -0.40 -17.87 16 16 H 0.45 14.84 8.96 -213.28 -1.91 12.92 16 17 N -0.35 -13.51 3.63 -337.54 -1.23 -14.74 16 18 C 0.26 10.69 5.02 85.64 0.43 11.12 16 19 C -0.64 -30.40 9.39 25.60 0.24 -30.16 16 20 H 0.05 2.50 7.81 -2.91 -0.02 2.47 16 21 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 22 N -0.92 -47.78 13.65 21.45 0.29 -47.49 16 23 Si 1.11 44.44 29.90 68.60 2.05 46.49 16 24 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 26 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 27 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.08 2.39 7.80 -2.39 -0.02 2.37 16 30 H 0.17 7.24 5.77 -2.91 -0.02 7.22 16 31 H 0.40 10.71 8.46 -92.71 -0.78 9.92 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.32 7.67 -2.39 -0.02 1.30 16 34 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.35 5.36 8.92 -89.69 -0.80 4.56 16 37 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 2.57 7.75 -2.39 -0.02 2.56 16 40 H 0.04 1.56 8.00 -2.39 -0.02 1.54 16 41 H 0.26 13.44 7.22 -92.71 -0.67 12.77 16 Total: -1.00 -64.05 342.40 -4.63 -68.68 By element: Atomic # 1 Polarization: 43.76 SS G_CDS: -2.31 Total: 41.45 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 6.57 Total: 25.45 kcal Atomic # 7 Polarization: -141.94 SS G_CDS: -10.87 Total: -152.82 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.06 Total: -29.24 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.05 Total: 46.49 kcal Total: -64.05 -4.63 -68.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595231640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.138 kcal (2) G-P(sol) polarization free energy of solvation -64.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds