Wall clock time and date at job start Tue Mar 31 2020 03:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 110.28491 * 2 1 4 4 C 1.34774 * 120.00570 * 300.70555 * 3 2 1 5 5 O 1.21838 * 120.00127 * 359.97438 * 4 3 2 6 6 N 1.33827 * 120.00111 * 180.02562 * 4 3 2 7 7 C 1.32941 * 120.00177 * 180.02562 * 6 4 3 8 8 C 1.41207 * 126.37382 * 359.95683 * 7 6 4 9 9 C 1.34962 * 108.24243 * 179.79309 * 8 7 6 10 10 N 1.36448 * 108.94476 * 0.39357 * 9 8 7 11 11 C 1.46505 * 125.85141 * 179.86606 * 10 9 8 12 12 C 1.50703 * 109.47064 * 274.69319 * 11 10 9 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47116 * 59.99536 * 16 14 12 18 18 H 1.48500 * 109.46585 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46730 * 299.99515 * 16 14 12 20 20 N 1.37419 * 126.38135 * 179.97438 * 7 6 4 21 21 H 0.96997 * 126.36158 * 359.95290 * 20 7 6 22 22 C 1.54252 * 110.32744 * 122.13259 * 2 1 3 23 23 C 1.54380 * 105.06020 * 118.99473 * 22 2 1 24 24 N 1.48564 * 104.59616 * 23.85443 * 23 22 2 25 25 C 1.48821 * 104.23275 * 320.49293 * 24 23 22 26 26 H 1.08998 * 109.47457 * 59.29443 * 1 2 3 27 27 H 1.09003 * 109.47205 * 179.30028 * 1 2 3 28 28 H 1.09000 * 109.47028 * 299.29135 * 1 2 3 29 29 H 0.97002 * 119.99572 * 120.71028 * 3 2 1 30 30 H 1.08002 * 125.88081 * 0.02562 * 8 7 6 31 31 H 1.07997 * 125.52552 * 180.24139 * 9 8 7 32 32 H 1.09002 * 109.47068 * 34.69287 * 11 10 9 33 33 H 1.09001 * 109.47372 * 154.69375 * 11 10 9 34 34 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 35 35 H 1.09000 * 110.32229 * 237.89292 * 22 2 1 36 36 H 1.09001 * 110.32406 * 359.97438 * 22 2 1 37 37 H 1.09001 * 110.40827 * 142.63052 * 23 22 2 38 38 H 1.09005 * 110.41312 * 265.07295 * 23 22 2 39 39 H 1.00894 * 111.00083 * 200.95852 * 24 23 22 40 40 H 1.08997 * 110.44941 * 280.77176 * 25 24 23 41 41 H 1.09001 * 110.49370 * 158.25309 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0379 1.3741 0.0000 4 6 1.7125 2.2129 -1.0035 5 8 0.9963 1.8283 -1.9110 6 7 2.1770 3.4680 -1.0037 7 6 1.8556 4.2956 -1.9932 8 6 1.0396 3.9940 -3.1055 9 6 0.9526 5.0978 -3.8772 10 7 1.6889 6.0955 -3.3080 11 6 1.8533 7.4509 -3.8394 12 6 2.9793 7.4647 -4.8409 13 1 3.5188 6.5550 -5.0593 14 6 3.3214 8.6388 -5.4775 15 7 2.6647 9.7467 -5.2111 16 14 4.7167 8.6558 -6.7194 17 1 4.4011 7.7236 -7.8313 18 1 4.8833 10.0296 -7.2579 19 1 5.9746 8.2276 -6.0563 20 7 2.2560 5.6036 -2.1244 21 1 2.8251 6.0950 -1.5117 22 6 2.0658 -0.7693 1.2249 23 6 2.8828 -1.9401 0.6373 24 7 3.2720 -1.4806 -0.7208 25 6 2.0661 -0.7697 -1.2261 26 1 -0.3634 0.5247 -0.8835 27 1 -0.3634 -1.0276 -0.0126 28 1 -0.3633 0.5028 0.8963 29 1 2.6084 1.6802 0.7223 30 1 0.5638 3.0447 -3.3026 31 1 0.3930 5.1775 -4.7975 32 1 0.9300 7.7646 -4.3265 33 1 2.0844 8.1356 -3.0234 34 1 2.9056 10.5729 -5.6587 35 1 2.7068 -0.1246 1.8262 36 1 1.2388 -1.1466 1.8265 37 1 3.7690 -2.1273 1.2438 38 1 2.2682 -2.8381 0.5732 39 1 3.5054 -2.2626 -1.3141 40 1 1.3235 -1.4844 -1.5808 41 1 2.3375 -0.0759 -2.0218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596119619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:18 Heat of formation + Delta-G solvation = 80.765929 kcal Electronic energy + Delta-G solvation = -23216.736972 eV Core-core repulsion = 19748.524214 eV Total energy + Delta-G solvation = -3468.212758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.73370 -39.77177 -37.75029 -34.37565 -33.59368 -32.83927 -31.03218 -30.92670 -29.98098 -29.16291 -26.62164 -25.50317 -23.34347 -22.22139 -21.61968 -21.19467 -19.96173 -18.97453 -17.41264 -16.92294 -16.47031 -16.09740 -15.73766 -14.99491 -14.86631 -14.77510 -14.25341 -14.13395 -13.94170 -13.13830 -13.00226 -12.95633 -12.72508 -12.51844 -12.27615 -12.02483 -11.96132 -11.82989 -11.64097 -11.32773 -11.12474 -11.02017 -10.70694 -10.50957 -10.36076 -9.55104 -9.51684 -8.96675 -8.89003 -8.64588 -8.47594 -8.22510 -6.83260 -6.44871 -4.62659 1.85457 2.14622 3.09656 3.14944 3.17765 3.22980 3.68067 4.08958 4.21160 4.50577 4.53235 4.60932 4.81408 4.84203 4.99545 5.17421 5.31990 5.37142 5.55193 5.58027 5.66171 5.77827 5.83151 5.88731 5.95235 6.05144 6.23708 6.31358 6.43924 6.57875 6.59792 6.67943 6.81506 7.19792 7.24649 7.41075 7.45213 7.54873 7.69417 7.92783 8.37330 8.48235 8.56610 9.07805 9.72001 10.55369 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.002884 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.929629 B = 9706.157310 C =10072.808255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.193 3.807 3 N -0.715 5.715 4 C 0.689 3.311 5 O -0.631 6.631 6 N -0.714 5.714 7 C 0.487 3.513 8 C -0.333 4.333 9 C 0.160 3.840 10 N -0.347 5.347 11 C 0.256 3.744 12 C -0.558 4.558 13 H 0.069 0.931 14 C 0.070 3.930 15 N -0.888 5.888 16 Si 0.910 3.090 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.273 1.273 20 N -0.473 5.473 21 H 0.444 0.556 22 C -0.127 4.127 23 C 0.036 3.964 24 N -0.666 5.666 25 C 0.034 3.966 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.395 0.605 30 H 0.183 0.817 31 H 0.185 0.815 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.272 0.728 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.333 0.667 40 H 0.043 0.957 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 -15.127 8.739 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.105 3.895 3 N -0.368 5.368 4 C 0.388 3.612 5 O -0.514 6.514 6 N -0.478 5.478 7 C 0.233 3.767 8 C -0.366 4.366 9 C 0.015 3.985 10 N -0.133 5.133 11 C 0.139 3.861 12 C -0.596 4.596 13 H 0.087 0.913 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.736 3.264 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.198 1.198 20 N -0.196 5.196 21 H 0.290 0.710 22 C -0.165 4.165 23 C -0.094 4.094 24 N -0.294 5.294 25 C -0.096 4.096 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.230 0.770 30 H 0.200 0.800 31 H 0.202 0.798 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.148 0.852 40 H 0.061 0.939 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.538 -14.056 8.881 16.820 hybrid contribution 0.354 -0.405 -0.743 0.917 sum -2.184 -14.461 8.138 16.737 Atomic orbital electron populations 1.22242 0.94221 1.01431 1.03905 1.20633 0.93343 0.81738 0.93800 1.44790 1.55085 1.10224 1.26744 1.16549 0.79445 0.83898 0.81273 1.90673 1.43231 1.79879 1.37567 1.68052 1.43676 1.05540 1.30575 1.18713 0.85884 0.82410 0.89676 1.22390 1.13464 1.01847 0.98907 1.22790 0.91651 0.86928 0.97135 1.47941 1.40751 1.13280 1.11336 1.20010 0.99704 0.71578 0.94759 1.21394 1.17580 0.96322 1.24292 0.91270 1.24954 0.96919 0.94826 0.96812 1.69889 1.40306 0.99990 1.42258 0.86348 0.81652 0.77466 0.80930 1.19675 1.20832 1.19845 1.44443 1.48170 1.10271 1.16680 0.70965 1.22655 0.99716 0.97102 0.97068 1.22897 0.98670 0.95920 0.91926 1.63820 1.34636 1.27712 1.03233 1.23411 0.90642 0.97280 0.98307 0.89539 0.92760 0.92793 0.77031 0.79978 0.79774 0.91497 0.93178 0.91821 0.90353 0.90401 0.90231 0.94290 0.85180 0.93858 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 8.16 37.16 0.30 -1.74 16 2 C 0.19 2.54 1.01 -130.44 -0.13 2.41 16 3 N -0.71 -11.21 5.16 -51.33 -0.26 -11.48 16 4 C 0.69 13.34 7.67 -87.77 -0.67 12.67 16 5 O -0.63 -12.99 10.08 5.07 0.05 -12.94 16 6 N -0.71 -14.30 10.59 -15.79 -0.17 -14.46 16 7 C 0.49 9.59 8.07 -155.29 -1.25 8.34 16 8 C -0.33 -6.27 9.52 -39.62 -0.38 -6.64 16 9 C 0.16 2.74 11.45 -16.66 -0.19 2.55 16 10 N -0.35 -6.55 3.63 -62.24 -0.23 -6.77 16 11 C 0.26 5.40 6.19 -5.19 -0.03 5.37 16 12 C -0.56 -13.42 9.39 -34.44 -0.32 -13.75 16 13 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 14 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -22.73 13.29 55.43 0.74 -22.00 16 16 Si 0.91 19.46 29.54 -169.99 -5.02 14.44 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 N -0.47 -8.63 7.38 31.33 0.23 -8.40 16 21 H 0.44 7.20 8.96 -182.56 -1.64 5.56 16 22 C -0.13 -1.27 6.43 -25.35 -0.16 -1.43 16 23 C 0.04 0.33 7.47 -2.18 -0.02 0.32 16 24 N -0.67 -7.82 7.63 -109.45 -0.84 -8.65 16 25 C 0.03 0.46 6.30 -2.03 -0.01 0.44 16 26 H 0.09 1.37 6.17 -51.93 -0.32 1.05 16 27 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.40 5.74 8.21 -40.82 -0.34 5.41 16 30 H 0.18 3.57 5.77 -52.49 -0.30 3.27 16 31 H 0.19 2.52 8.06 -52.49 -0.42 2.09 16 32 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.08 0.76 7.49 -51.93 -0.39 0.37 16 36 H 0.08 0.65 7.71 -51.93 -0.40 0.25 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.33 3.28 8.92 -39.29 -0.35 2.93 16 40 H 0.04 0.54 7.85 -51.93 -0.41 0.13 16 41 H 0.10 1.66 6.59 -51.93 -0.34 1.32 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -28.91 336.43 -10.38 -39.29 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -6.99 Total: 15.73 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -2.97 Total: 10.16 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -0.53 Total: -71.75 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.05 Total: -12.94 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.91 -10.38 -39.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596119619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.058 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds