Wall clock time and date at job start Tue Mar 31 2020 03:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 110.28491 * 2 1 4 4 C 1.34774 * 120.00570 * 300.70555 * 3 2 1 5 5 O 1.21838 * 120.00127 * 359.97438 * 4 3 2 6 6 N 1.33827 * 120.00111 * 180.02562 * 4 3 2 7 7 C 1.32941 * 120.00177 * 180.02562 * 6 4 3 8 8 C 1.41207 * 126.37382 * 359.95683 * 7 6 4 9 9 C 1.34962 * 108.24243 * 179.79309 * 8 7 6 10 10 N 1.36448 * 108.94476 * 0.39357 * 9 8 7 11 11 C 1.46505 * 125.85141 * 179.86606 * 10 9 8 12 12 C 1.50703 * 109.47064 * 274.69319 * 11 10 9 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47116 * 59.99536 * 16 14 12 18 18 H 1.48500 * 109.46585 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46730 * 299.99515 * 16 14 12 20 20 N 1.37419 * 126.38135 * 179.97438 * 7 6 4 21 21 H 0.96997 * 126.36158 * 359.95290 * 20 7 6 22 22 C 1.54252 * 110.32744 * 122.13259 * 2 1 3 23 23 C 1.54380 * 105.06020 * 118.99473 * 22 2 1 24 24 N 1.48564 * 104.59616 * 23.85443 * 23 22 2 25 25 C 1.48821 * 104.23275 * 320.49293 * 24 23 22 26 26 H 1.08998 * 109.47457 * 59.29443 * 1 2 3 27 27 H 1.09003 * 109.47205 * 179.30028 * 1 2 3 28 28 H 1.09000 * 109.47028 * 299.29135 * 1 2 3 29 29 H 0.97002 * 119.99572 * 120.71028 * 3 2 1 30 30 H 1.08002 * 125.88081 * 0.02562 * 8 7 6 31 31 H 1.07997 * 125.52552 * 180.24139 * 9 8 7 32 32 H 1.09002 * 109.47068 * 34.69287 * 11 10 9 33 33 H 1.09001 * 109.47372 * 154.69375 * 11 10 9 34 34 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 35 35 H 1.09000 * 110.32229 * 237.89292 * 22 2 1 36 36 H 1.09001 * 110.32406 * 359.97438 * 22 2 1 37 37 H 1.09001 * 110.40827 * 142.63052 * 23 22 2 38 38 H 1.09005 * 110.41312 * 265.07295 * 23 22 2 39 39 H 1.00894 * 111.00083 * 200.95852 * 24 23 22 40 40 H 1.08997 * 110.44941 * 280.77176 * 25 24 23 41 41 H 1.09001 * 110.49370 * 158.25309 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0379 1.3741 0.0000 4 6 1.7125 2.2129 -1.0035 5 8 0.9963 1.8283 -1.9110 6 7 2.1770 3.4680 -1.0037 7 6 1.8556 4.2956 -1.9932 8 6 1.0396 3.9940 -3.1055 9 6 0.9526 5.0978 -3.8772 10 7 1.6889 6.0955 -3.3080 11 6 1.8533 7.4509 -3.8394 12 6 2.9793 7.4647 -4.8409 13 1 3.5188 6.5550 -5.0593 14 6 3.3214 8.6388 -5.4775 15 7 2.6647 9.7467 -5.2111 16 14 4.7167 8.6558 -6.7194 17 1 4.4011 7.7236 -7.8313 18 1 4.8833 10.0296 -7.2579 19 1 5.9746 8.2276 -6.0563 20 7 2.2560 5.6036 -2.1244 21 1 2.8251 6.0950 -1.5117 22 6 2.0658 -0.7693 1.2249 23 6 2.8828 -1.9401 0.6373 24 7 3.2720 -1.4806 -0.7208 25 6 2.0661 -0.7697 -1.2261 26 1 -0.3634 0.5247 -0.8835 27 1 -0.3634 -1.0276 -0.0126 28 1 -0.3633 0.5028 0.8963 29 1 2.6084 1.6802 0.7223 30 1 0.5638 3.0447 -3.3026 31 1 0.3930 5.1775 -4.7975 32 1 0.9300 7.7646 -4.3265 33 1 2.0844 8.1356 -3.0234 34 1 2.9056 10.5729 -5.6587 35 1 2.7068 -0.1246 1.8262 36 1 1.2388 -1.1466 1.8265 37 1 3.7690 -2.1273 1.2438 38 1 2.2682 -2.8381 0.5732 39 1 3.5054 -2.2626 -1.3141 40 1 1.3235 -1.4844 -1.5808 41 1 2.3375 -0.0759 -2.0218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596119619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:18 Heat of formation + Delta-G solvation = 58.738695 kcal Electronic energy + Delta-G solvation = -23217.692145 eV Core-core repulsion = 19748.524214 eV Total energy + Delta-G solvation = -3469.167930 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.21668 -40.96198 -38.98167 -35.96414 -34.92587 -34.43820 -32.49191 -32.40070 -31.24661 -30.08392 -28.30899 -26.52534 -25.00448 -23.56711 -22.70466 -22.60050 -21.20303 -20.22989 -18.97435 -18.60840 -17.75533 -17.17154 -16.96491 -16.59996 -16.33817 -16.16986 -15.66123 -15.44420 -15.17557 -14.55971 -14.33467 -14.24955 -14.00955 -13.89222 -13.63811 -13.22813 -13.15152 -12.97644 -12.86777 -12.71890 -12.46901 -12.29204 -12.13560 -12.04659 -11.63073 -11.16894 -10.99746 -10.75702 -10.44816 -9.78163 -9.75176 -9.51310 -8.51740 -8.15977 -6.54612 0.37718 0.65743 1.40331 1.42622 1.49933 1.74687 2.30956 2.42490 2.94721 3.07762 3.21324 3.36888 3.63198 3.79605 3.96626 4.18507 4.29200 4.34453 4.42879 4.50467 4.61806 4.77010 4.79172 4.86291 4.88114 4.89927 4.94563 5.01750 5.07181 5.21533 5.30754 5.40631 5.53103 5.72672 5.74212 5.93808 6.09148 6.19316 6.38667 6.41322 6.63043 6.98006 7.14214 7.19249 8.25328 8.67557 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.002884 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.929629 B = 9706.157310 C =10072.808255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.183 3.817 3 N -0.706 5.706 4 C 0.676 3.324 5 O -0.649 6.649 6 N -0.727 5.727 7 C 0.472 3.528 8 C -0.344 4.344 9 C 0.174 3.826 10 N -0.352 5.352 11 C 0.269 3.731 12 C -0.566 4.566 13 H 0.059 0.941 14 C 0.030 3.970 15 N -0.914 5.914 16 Si 0.963 3.037 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.276 1.276 20 N -0.470 5.470 21 H 0.450 0.550 22 C -0.121 4.121 23 C 0.038 3.962 24 N -0.680 5.680 25 C 0.039 3.961 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.400 0.600 30 H 0.174 0.826 31 H 0.221 0.779 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.274 0.726 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.343 0.657 40 H 0.053 0.947 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.877 -16.414 9.308 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.095 3.905 3 N -0.360 5.360 4 C 0.375 3.625 5 O -0.533 6.533 6 N -0.492 5.492 7 C 0.218 3.782 8 C -0.377 4.377 9 C 0.030 3.970 10 N -0.138 5.138 11 C 0.152 3.848 12 C -0.605 4.605 13 H 0.077 0.923 14 C -0.172 4.172 15 N -0.551 5.551 16 Si 0.788 3.212 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.201 1.201 20 N -0.194 5.194 21 H 0.298 0.702 22 C -0.159 4.159 23 C -0.091 4.091 24 N -0.310 5.310 25 C -0.092 4.092 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.235 0.765 30 H 0.191 0.809 31 H 0.238 0.762 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.159 0.841 40 H 0.071 0.929 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.384 -15.379 9.481 18.223 hybrid contribution 0.306 -0.072 -0.887 0.941 sum -2.079 -15.451 8.593 17.801 Atomic orbital electron populations 1.22163 0.93980 1.02609 1.02388 1.20937 0.93619 0.80556 0.95379 1.44852 1.54527 1.10865 1.25733 1.16840 0.79573 0.84118 0.81959 1.90657 1.44034 1.80177 1.38440 1.68099 1.44091 1.06028 1.30945 1.18937 0.86349 0.82804 0.90123 1.22301 1.13986 1.02097 0.99324 1.23313 0.90520 0.85583 0.97560 1.47797 1.41224 1.13080 1.11739 1.19695 0.98891 0.72346 0.93875 1.21599 1.18190 0.95880 1.24791 0.92324 1.25597 0.98730 0.94634 0.98265 1.69954 1.41523 1.00403 1.43247 0.85518 0.79086 0.77529 0.79089 1.19300 1.20403 1.20146 1.44416 1.48304 1.09953 1.16680 0.70170 1.22679 1.00599 0.96869 0.95741 1.22988 0.99528 0.96232 0.90381 1.63758 1.33878 1.28674 1.04652 1.23198 0.91612 0.96964 0.97388 0.93002 0.90165 0.92292 0.76457 0.80863 0.76248 0.91158 0.93991 0.91701 0.90015 0.88030 0.88906 0.92282 0.84100 0.92916 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 8.16 71.98 0.59 -3.18 16 2 C 0.18 4.61 1.01 4.50 0.00 4.61 16 3 N -0.71 -22.10 5.16 -434.46 -2.24 -24.34 16 4 C 0.68 26.70 7.67 179.35 1.38 28.07 16 5 O -0.65 -27.58 10.08 -4.79 -0.05 -27.63 16 6 N -0.73 -29.55 10.59 -322.56 -3.42 -32.97 16 7 C 0.47 18.77 8.07 133.95 1.08 19.85 16 8 C -0.34 -13.01 9.52 22.25 0.21 -12.80 16 9 C 0.17 5.82 11.45 83.22 0.95 6.77 16 10 N -0.35 -13.08 3.63 -350.82 -1.28 -14.35 16 11 C 0.27 11.21 6.19 85.63 0.53 11.74 16 12 C -0.57 -26.91 9.39 25.60 0.24 -26.67 16 13 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 14 C 0.03 1.46 5.46 84.65 0.46 1.92 16 15 N -0.91 -46.31 13.29 21.45 0.28 -46.02 16 16 Si 0.96 39.29 29.54 68.60 2.03 41.32 16 17 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 20 N -0.47 -17.13 7.38 -54.78 -0.40 -17.54 16 21 H 0.45 14.67 8.96 -213.29 -1.91 12.76 16 22 C -0.12 -2.08 6.43 31.49 0.20 -1.87 16 23 C 0.04 0.60 7.47 86.45 0.65 1.24 16 24 N -0.68 -15.00 7.63 -500.19 -3.82 -18.82 16 25 C 0.04 1.04 6.30 86.40 0.54 1.59 16 26 H 0.05 1.66 6.17 -2.39 -0.01 1.64 16 27 H 0.08 1.52 8.13 -2.39 -0.02 1.50 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.40 11.45 8.21 -92.71 -0.76 10.69 16 30 H 0.17 6.95 5.77 -2.91 -0.02 6.93 16 31 H 0.22 5.53 8.06 -2.91 -0.02 5.51 16 32 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.27 13.23 8.31 -92.71 -0.77 12.46 16 35 H 0.08 1.37 7.49 -2.39 -0.02 1.36 16 36 H 0.10 1.30 7.71 -2.39 -0.02 1.28 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 39 H 0.34 6.27 8.92 -89.70 -0.80 5.47 16 40 H 0.05 1.28 7.85 -2.39 -0.02 1.26 16 41 H 0.05 1.90 6.59 -2.39 -0.02 1.88 16 Total: -1.00 -62.10 336.43 -4.44 -66.54 By element: Atomic # 1 Polarization: 44.93 SS G_CDS: -2.39 Total: 42.54 kcal Atomic # 6 Polarization: 24.43 SS G_CDS: 6.84 Total: 31.27 kcal Atomic # 7 Polarization: -143.18 SS G_CDS: -10.87 Total: -154.04 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.05 Total: -27.63 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -62.10 -4.44 -66.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596119619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.283 kcal (2) G-P(sol) polarization free energy of solvation -62.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds