Wall clock time and date at job start Tue Mar 31 2020 03:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 110.35257 * 2 1 4 4 C 1.34770 * 120.00142 * 57.85459 * 3 2 1 5 5 O 1.21837 * 120.00148 * 359.97438 * 4 3 2 6 6 N 1.33834 * 119.99903 * 180.02562 * 4 3 2 7 7 C 1.32932 * 119.99806 * 180.02562 * 6 4 3 8 8 C 1.41206 * 126.38149 * 359.68692 * 7 6 4 9 9 C 1.34959 * 108.24371 * 179.82500 * 8 7 6 10 10 N 1.36451 * 108.94773 * 0.44303 * 9 8 7 11 11 C 1.46500 * 125.84834 * 179.71862 * 10 9 8 12 12 C 1.50693 * 109.47279 * 274.99985 * 11 10 9 13 13 H 1.08000 * 120.00418 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99797 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99622 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99980 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47050 * 90.00338 * 16 14 12 18 18 H 1.48511 * 109.46874 * 209.99852 * 16 14 12 19 19 H 1.48498 * 109.47040 * 329.99773 * 16 14 12 20 20 N 1.37427 * 126.37499 * 180.02562 * 7 6 4 21 21 H 0.96992 * 126.36871 * 0.03291 * 20 7 6 22 22 C 1.54597 * 110.31019 * 237.85362 * 2 1 3 23 23 C 1.54935 * 102.92173 * 219.12740 * 22 2 1 24 24 N 1.48535 * 103.22735 * 37.41332 * 23 22 2 25 25 C 1.47900 * 105.81882 * 320.79334 * 24 23 22 26 26 H 1.08999 * 109.47279 * 182.14396 * 1 2 3 27 27 H 1.09005 * 109.47300 * 302.14392 * 1 2 3 28 28 H 1.08998 * 109.47280 * 62.14736 * 1 2 3 29 29 H 0.97004 * 119.99426 * 237.85715 * 3 2 1 30 30 H 1.07998 * 125.87923 * 359.97223 * 8 7 6 31 31 H 1.08005 * 125.52179 * 180.14262 * 9 8 7 32 32 H 1.08994 * 109.47406 * 35.00716 * 11 10 9 33 33 H 1.09009 * 109.46509 * 155.00219 * 11 10 9 34 34 H 0.97002 * 119.99982 * 180.02562 * 15 14 12 35 35 H 1.08997 * 110.72100 * 337.48982 * 22 2 1 36 36 H 1.09006 * 110.72180 * 100.58927 * 22 2 1 37 37 H 1.09004 * 110.66507 * 155.85004 * 23 22 2 38 38 H 1.09001 * 110.66821 * 278.97915 * 23 22 2 39 39 H 1.00903 * 110.99822 * 200.27648 * 24 23 22 40 40 H 1.08999 * 109.91522 * 265.97300 * 25 24 23 41 41 H 1.09005 * 109.91045 * 144.68308 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0395 1.3736 0.0000 4 6 1.6917 2.2214 0.9882 5 8 0.9531 1.8457 1.8814 6 7 2.1567 3.4763 0.9879 7 6 1.8140 4.3124 1.9629 8 6 0.9678 4.0229 3.0556 9 6 0.8732 5.1300 3.8216 10 7 1.6188 6.1240 3.2577 11 6 1.7721 7.4837 3.7811 12 6 0.6264 8.3381 3.3033 13 1 -0.1397 7.9110 2.6732 14 6 0.5562 9.6652 3.6707 15 7 -0.4440 10.4107 3.2542 16 14 1.8816 10.4041 4.7600 17 1 2.9698 10.9537 3.9120 18 1 1.2962 11.4939 5.5818 19 1 2.4323 9.3525 5.6522 20 7 2.2122 5.6214 2.0916 21 1 2.7952 6.1072 1.4876 22 6 2.0666 -0.7714 -1.2276 23 6 3.2855 -1.5348 -0.6514 24 7 2.8313 -1.9235 0.7084 25 6 2.0645 -0.7682 1.2229 26 1 -0.3634 -1.0269 0.0384 27 1 -0.3634 0.5468 0.8702 28 1 -0.3634 0.4801 -0.9086 29 1 2.6272 1.6728 -0.7114 30 1 0.4820 3.0775 3.2469 31 1 0.2966 5.2167 4.7307 32 1 1.7747 7.4555 4.8706 33 1 2.7126 7.9055 3.4263 34 1 -0.4933 11.3445 3.5123 35 1 1.3172 -1.4683 -1.6029 36 1 2.3762 -0.0808 -2.0120 37 1 3.5046 -2.4183 -1.2510 38 1 4.1564 -0.8818 -0.5940 39 1 3.6169 -2.1314 1.3064 40 1 2.7162 -0.1225 1.8114 41 1 1.2326 -1.1176 1.8346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596119620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:21 Heat of formation + Delta-G solvation = 86.245913 kcal Electronic energy + Delta-G solvation = -23234.210204 eV Core-core repulsion = 19766.235076 eV Total energy + Delta-G solvation = -3467.975128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86776 -39.86389 -37.83211 -34.45930 -33.60659 -32.88750 -31.24082 -31.09433 -30.12079 -29.32304 -27.04221 -25.48004 -23.10181 -22.03904 -21.74214 -21.31146 -20.11946 -19.07087 -17.47555 -17.39898 -16.80326 -16.17642 -15.40516 -15.09314 -14.89019 -14.76830 -14.46677 -14.02539 -13.95102 -13.34798 -13.24557 -13.17758 -12.88872 -12.79866 -12.41420 -12.25102 -11.88227 -11.83321 -11.56951 -11.43077 -11.08389 -11.04137 -10.81560 -10.68882 -10.06296 -9.67500 -9.64063 -9.09269 -9.05363 -8.78071 -8.51286 -8.32650 -6.87559 -6.52584 -4.61045 1.71426 1.98998 2.94989 2.99654 3.06281 3.11212 3.53869 3.96330 4.21667 4.37190 4.46796 4.55360 4.75139 4.75793 4.94059 5.19800 5.20457 5.39272 5.52515 5.62312 5.64891 5.78240 5.81845 5.88290 5.91921 6.01082 6.06138 6.13142 6.22233 6.33389 6.53102 6.55816 6.70072 6.92749 7.11369 7.18169 7.31644 7.53740 7.72716 8.00266 8.27519 8.43772 8.51548 8.99828 9.59943 10.59025 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.043302 B = 0.002783 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.459493 B =10057.302324 C =10139.459327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.185 3.815 3 N -0.723 5.723 4 C 0.687 3.313 5 O -0.625 6.625 6 N -0.713 5.713 7 C 0.490 3.510 8 C -0.329 4.329 9 C 0.164 3.836 10 N -0.346 5.346 11 C 0.230 3.770 12 C -0.565 4.565 13 H 0.085 0.915 14 C 0.083 3.917 15 N -0.876 5.876 16 Si 0.875 3.125 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.263 1.263 20 N -0.472 5.472 21 H 0.444 0.556 22 C -0.125 4.125 23 C 0.036 3.964 24 N -0.674 5.674 25 C 0.043 3.957 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.394 0.606 30 H 0.185 0.815 31 H 0.188 0.812 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.273 0.727 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.335 0.665 40 H 0.048 0.952 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.212 -15.916 -3.354 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.097 3.903 3 N -0.378 5.378 4 C 0.387 3.613 5 O -0.507 6.507 6 N -0.477 5.477 7 C 0.236 3.764 8 C -0.362 4.362 9 C 0.020 3.980 10 N -0.132 5.132 11 C 0.112 3.888 12 C -0.602 4.602 13 H 0.103 0.897 14 C -0.123 4.123 15 N -0.512 5.512 16 Si 0.700 3.300 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.188 1.188 20 N -0.195 5.195 21 H 0.291 0.709 22 C -0.164 4.164 23 C -0.093 4.093 24 N -0.303 5.303 25 C -0.087 4.087 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.228 0.772 30 H 0.202 0.798 31 H 0.205 0.795 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.150 0.850 40 H 0.066 0.934 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.625 -15.879 -3.528 17.564 hybrid contribution 1.438 1.599 0.506 2.210 sum 8.063 -14.280 -3.021 16.675 Atomic orbital electron populations 1.22204 0.93688 1.01954 1.03681 1.20793 0.94513 0.80995 0.94032 1.44960 1.53895 1.10515 1.28426 1.16569 0.79684 0.83851 0.81238 1.90691 1.41697 1.80125 1.38157 1.68054 1.43919 1.05256 1.30518 1.18697 0.85944 0.82490 0.89309 1.22426 1.12311 1.02114 0.99356 1.22806 0.90773 0.86542 0.97871 1.47421 1.41222 1.11964 1.12629 1.20314 0.99316 0.73832 0.95356 1.21266 1.09122 0.94965 1.34889 0.89659 1.24836 0.95692 0.96470 0.95339 1.69860 1.30056 1.07833 1.43431 0.86890 0.81950 0.80071 0.81053 1.19609 1.20220 1.18778 1.44382 1.46617 1.09644 1.18848 0.70887 1.22815 0.98000 0.98856 0.96679 1.23029 0.96218 0.98771 0.91267 1.63154 1.25938 1.37583 1.03658 1.23059 0.98414 0.90581 0.96653 0.92188 0.89508 0.93036 0.77165 0.79777 0.79539 0.91810 0.93883 0.91712 0.89495 0.90492 0.90124 0.94060 0.84974 0.93385 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.14 37.16 0.30 -1.81 16 2 C 0.18 2.39 0.95 -130.46 -0.12 2.26 16 3 N -0.72 -10.77 5.08 -51.34 -0.26 -11.03 16 4 C 0.69 12.85 7.66 -87.76 -0.67 12.18 16 5 O -0.62 -12.61 10.55 5.07 0.05 -12.55 16 6 N -0.71 -13.72 10.59 -15.79 -0.17 -13.89 16 7 C 0.49 9.29 8.07 -155.29 -1.25 8.04 16 8 C -0.33 -5.99 9.52 -39.62 -0.38 -6.37 16 9 C 0.16 2.70 11.45 -16.66 -0.19 2.51 16 10 N -0.35 -6.21 3.63 -62.24 -0.23 -6.44 16 11 C 0.23 4.40 5.26 -5.20 -0.03 4.37 16 12 C -0.56 -13.67 9.94 -34.44 -0.34 -14.01 16 13 H 0.09 2.38 8.06 -52.49 -0.42 1.95 16 14 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.88 -23.98 13.96 55.43 0.77 -23.20 16 16 Si 0.87 17.86 27.47 -169.99 -4.67 13.20 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.26 -4.94 6.54 56.52 0.37 -4.57 16 20 N -0.47 -8.21 7.38 31.33 0.23 -7.97 16 21 H 0.44 6.75 8.96 -182.56 -1.64 5.12 16 22 C -0.13 -1.23 6.27 -24.87 -0.16 -1.39 16 23 C 0.04 0.34 7.55 -1.90 -0.01 0.33 16 24 N -0.67 -7.32 7.51 -110.08 -0.83 -8.15 16 25 C 0.04 0.57 6.11 -2.76 -0.02 0.55 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 1.43 6.03 -51.93 -0.31 1.11 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.39 5.28 8.36 -40.82 -0.34 4.94 16 30 H 0.19 3.51 5.77 -52.49 -0.30 3.21 16 31 H 0.19 2.41 8.06 -52.48 -0.42 1.98 16 32 H 0.06 1.14 7.20 -51.93 -0.37 0.76 16 33 H 0.04 0.78 7.57 -51.92 -0.39 0.39 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.09 0.80 7.86 -51.93 -0.41 0.39 16 36 H 0.08 0.67 7.75 -51.93 -0.40 0.27 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.34 3.19 8.92 -39.29 -0.35 2.84 16 40 H 0.05 0.73 7.48 -51.93 -0.39 0.35 16 41 H 0.08 1.20 7.68 -51.93 -0.40 0.80 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -29.95 333.90 -10.04 -39.99 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -7.01 Total: 16.39 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -2.97 Total: 8.63 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -0.48 Total: -70.69 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.05 Total: -12.55 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -4.67 Total: 13.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.95 -10.04 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596119620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.237 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds