Wall clock time and date at job start Tue Mar 31 2020 03:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 110.35257 * 2 1 4 4 C 1.34770 * 120.00142 * 57.85459 * 3 2 1 5 5 O 1.21837 * 120.00148 * 359.97438 * 4 3 2 6 6 N 1.33834 * 119.99903 * 180.02562 * 4 3 2 7 7 C 1.32932 * 119.99806 * 180.02562 * 6 4 3 8 8 C 1.41206 * 126.38149 * 359.68692 * 7 6 4 9 9 C 1.34959 * 108.24371 * 179.82500 * 8 7 6 10 10 N 1.36451 * 108.94773 * 0.44303 * 9 8 7 11 11 C 1.46500 * 125.84834 * 179.71862 * 10 9 8 12 12 C 1.50693 * 109.47279 * 274.99985 * 11 10 9 13 13 H 1.08000 * 120.00418 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99797 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99622 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99980 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47050 * 90.00338 * 16 14 12 18 18 H 1.48511 * 109.46874 * 209.99852 * 16 14 12 19 19 H 1.48498 * 109.47040 * 329.99773 * 16 14 12 20 20 N 1.37427 * 126.37499 * 180.02562 * 7 6 4 21 21 H 0.96992 * 126.36871 * 0.03291 * 20 7 6 22 22 C 1.54597 * 110.31019 * 237.85362 * 2 1 3 23 23 C 1.54935 * 102.92173 * 219.12740 * 22 2 1 24 24 N 1.48535 * 103.22735 * 37.41332 * 23 22 2 25 25 C 1.47900 * 105.81882 * 320.79334 * 24 23 22 26 26 H 1.08999 * 109.47279 * 182.14396 * 1 2 3 27 27 H 1.09005 * 109.47300 * 302.14392 * 1 2 3 28 28 H 1.08998 * 109.47280 * 62.14736 * 1 2 3 29 29 H 0.97004 * 119.99426 * 237.85715 * 3 2 1 30 30 H 1.07998 * 125.87923 * 359.97223 * 8 7 6 31 31 H 1.08005 * 125.52179 * 180.14262 * 9 8 7 32 32 H 1.08994 * 109.47406 * 35.00716 * 11 10 9 33 33 H 1.09009 * 109.46509 * 155.00219 * 11 10 9 34 34 H 0.97002 * 119.99982 * 180.02562 * 15 14 12 35 35 H 1.08997 * 110.72100 * 337.48982 * 22 2 1 36 36 H 1.09006 * 110.72180 * 100.58927 * 22 2 1 37 37 H 1.09004 * 110.66507 * 155.85004 * 23 22 2 38 38 H 1.09001 * 110.66821 * 278.97915 * 23 22 2 39 39 H 1.00903 * 110.99822 * 200.27648 * 24 23 22 40 40 H 1.08999 * 109.91522 * 265.97300 * 25 24 23 41 41 H 1.09005 * 109.91045 * 144.68308 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0395 1.3736 0.0000 4 6 1.6917 2.2214 0.9882 5 8 0.9531 1.8457 1.8814 6 7 2.1567 3.4763 0.9879 7 6 1.8140 4.3124 1.9629 8 6 0.9678 4.0229 3.0556 9 6 0.8732 5.1300 3.8216 10 7 1.6188 6.1240 3.2577 11 6 1.7721 7.4837 3.7811 12 6 0.6264 8.3381 3.3033 13 1 -0.1397 7.9110 2.6732 14 6 0.5562 9.6652 3.6707 15 7 -0.4440 10.4107 3.2542 16 14 1.8816 10.4041 4.7600 17 1 2.9698 10.9537 3.9120 18 1 1.2962 11.4939 5.5818 19 1 2.4323 9.3525 5.6522 20 7 2.2122 5.6214 2.0916 21 1 2.7952 6.1072 1.4876 22 6 2.0666 -0.7714 -1.2276 23 6 3.2855 -1.5348 -0.6514 24 7 2.8313 -1.9235 0.7084 25 6 2.0645 -0.7682 1.2229 26 1 -0.3634 -1.0269 0.0384 27 1 -0.3634 0.5468 0.8702 28 1 -0.3634 0.4801 -0.9086 29 1 2.6272 1.6728 -0.7114 30 1 0.4820 3.0775 3.2469 31 1 0.2966 5.2167 4.7307 32 1 1.7747 7.4555 4.8706 33 1 2.7126 7.9055 3.4263 34 1 -0.4933 11.3445 3.5123 35 1 1.3172 -1.4683 -1.6029 36 1 2.3762 -0.0808 -2.0120 37 1 3.5046 -2.4183 -1.2510 38 1 4.1564 -0.8818 -0.5940 39 1 3.6169 -2.1314 1.3064 40 1 2.7162 -0.1225 1.8114 41 1 1.2326 -1.1176 1.8346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596119620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:20 Heat of formation + Delta-G solvation = 61.987270 kcal Electronic energy + Delta-G solvation = -23235.262138 eV Core-core repulsion = 19766.235076 eV Total energy + Delta-G solvation = -3469.027062 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.27629 -41.03759 -39.03648 -35.96231 -34.92042 -34.49131 -32.73912 -32.49849 -31.33520 -30.22655 -28.66553 -26.52365 -24.68680 -23.45788 -22.69431 -22.64286 -21.37476 -20.28586 -19.26187 -18.82529 -17.90085 -17.50028 -16.65519 -16.53338 -16.29823 -15.99455 -15.83344 -15.35399 -15.09370 -14.74603 -14.52012 -14.36868 -14.34051 -14.22468 -13.78788 -13.31936 -13.21832 -12.92923 -12.74140 -12.59345 -12.33463 -12.26432 -12.06062 -11.84122 -11.80298 -11.23374 -11.05230 -10.92004 -10.49731 -9.95078 -9.82456 -9.49025 -8.42754 -8.32003 -6.56156 0.29701 0.60326 1.38984 1.39963 1.49127 1.69357 2.25865 2.31437 2.90147 2.99951 3.15731 3.38836 3.59269 3.76256 3.91667 3.99900 4.26461 4.34278 4.40268 4.46056 4.54699 4.62385 4.71852 4.75873 4.84380 4.90363 4.93328 4.99843 5.10411 5.15587 5.17128 5.27232 5.41176 5.62803 5.83849 6.00029 6.05699 6.11810 6.34420 6.44304 6.55126 6.91979 7.06803 7.10300 8.18376 8.74008 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.043302 B = 0.002783 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.459493 B =10057.302324 C =10139.459327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.176 3.824 3 N -0.712 5.712 4 C 0.674 3.326 5 O -0.646 6.646 6 N -0.724 5.724 7 C 0.473 3.527 8 C -0.345 4.345 9 C 0.177 3.823 10 N -0.352 5.352 11 C 0.235 3.765 12 C -0.566 4.566 13 H 0.032 0.968 14 C 0.022 3.978 15 N -0.937 5.937 16 Si 0.950 3.050 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.225 1.225 20 N -0.468 5.468 21 H 0.452 0.548 22 C -0.117 4.117 23 C 0.038 3.962 24 N -0.673 5.673 25 C 0.051 3.949 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.402 0.598 30 H 0.174 0.826 31 H 0.224 0.776 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.273 0.727 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.043 0.957 39 H 0.343 0.657 40 H 0.021 0.979 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.344 -16.790 -2.922 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.089 3.911 3 N -0.367 5.367 4 C 0.373 3.627 5 O -0.530 6.530 6 N -0.489 5.489 7 C 0.219 3.781 8 C -0.377 4.377 9 C 0.034 3.966 10 N -0.137 5.137 11 C 0.117 3.883 12 C -0.604 4.604 13 H 0.050 0.950 14 C -0.179 4.179 15 N -0.575 5.575 16 Si 0.771 3.229 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.147 1.147 20 N -0.192 5.192 21 H 0.301 0.699 22 C -0.156 4.156 23 C -0.091 4.091 24 N -0.303 5.303 25 C -0.079 4.079 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.238 0.762 30 H 0.191 0.809 31 H 0.240 0.760 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.061 0.939 39 H 0.159 0.841 40 H 0.040 0.960 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.790 -16.805 -3.126 19.221 hybrid contribution 0.691 1.794 0.296 1.946 sum 9.481 -15.011 -2.831 17.979 Atomic orbital electron populations 1.22126 0.94210 1.02490 1.02152 1.21017 0.94214 0.80187 0.95710 1.44945 1.53373 1.10813 1.27529 1.16879 0.79762 0.84148 0.81872 1.90679 1.42633 1.80480 1.39179 1.68103 1.44348 1.05643 1.30819 1.18926 0.86421 0.83052 0.89692 1.22330 1.12957 1.02446 0.99986 1.23348 0.89560 0.85338 0.98363 1.47414 1.41624 1.11928 1.12780 1.20244 0.97800 0.73430 0.96816 1.21445 1.09436 0.95790 1.33724 0.94969 1.25852 0.98158 0.96904 0.96942 1.70040 1.33104 1.08354 1.45975 0.85704 0.78371 0.79628 0.79176 1.19090 1.21124 1.14707 1.44383 1.46613 1.09240 1.19005 0.69937 1.22832 0.98387 0.98874 0.95465 1.23131 0.95904 0.99729 0.90369 1.63157 1.26477 1.36086 1.04582 1.22852 0.97743 0.90918 0.96426 0.90452 0.92918 0.92703 0.76243 0.80909 0.75963 0.88751 0.91696 0.91784 0.88259 0.88971 0.87864 0.93863 0.84086 0.96023 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 8.14 71.98 0.59 -3.47 16 2 C 0.18 4.43 0.95 4.48 0.00 4.44 16 3 N -0.71 -21.08 5.08 -434.52 -2.21 -23.28 16 4 C 0.67 25.68 7.66 179.35 1.37 27.06 16 5 O -0.65 -26.99 10.55 -4.79 -0.05 -27.04 16 6 N -0.72 -28.15 10.59 -322.55 -3.42 -31.57 16 7 C 0.47 18.02 8.07 133.95 1.08 19.10 16 8 C -0.34 -12.58 9.52 22.24 0.21 -12.37 16 9 C 0.18 5.59 11.45 83.22 0.95 6.54 16 10 N -0.35 -12.05 3.63 -350.84 -1.28 -13.32 16 11 C 0.24 8.37 5.26 85.63 0.45 8.82 16 12 C -0.57 -27.30 9.94 25.60 0.25 -27.04 16 13 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 14 C 0.02 1.09 5.47 84.66 0.46 1.55 16 15 N -0.94 -52.60 13.96 21.45 0.30 -52.30 16 16 Si 0.95 35.23 27.47 68.60 1.88 37.12 16 17 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 18 H -0.29 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.22 -6.91 6.54 99.48 0.65 -6.26 16 20 N -0.47 -15.95 7.38 -54.78 -0.40 -16.36 16 21 H 0.45 13.39 8.96 -213.29 -1.91 11.48 16 22 C -0.12 -2.03 6.27 31.80 0.20 -1.83 16 23 C 0.04 0.60 7.55 86.65 0.65 1.26 16 24 N -0.67 -13.62 7.51 -502.19 -3.77 -17.39 16 25 C 0.05 1.36 6.11 86.45 0.53 1.89 16 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.79 6.03 -2.38 -0.01 1.77 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 29 H 0.40 10.44 8.36 -92.71 -0.78 9.67 16 30 H 0.17 6.78 5.77 -2.91 -0.02 6.77 16 31 H 0.22 5.16 8.06 -2.91 -0.02 5.14 16 32 H 0.09 2.90 7.20 -2.39 -0.02 2.88 16 33 H 0.07 2.09 7.57 -2.38 -0.02 2.08 16 34 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.10 1.52 7.86 -2.39 -0.02 1.50 16 36 H 0.09 1.34 7.75 -2.38 -0.02 1.32 16 37 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.34 6.07 8.92 -89.69 -0.80 5.27 16 40 H 0.02 0.67 7.48 -2.39 -0.02 0.66 16 41 H 0.07 2.04 7.68 -2.38 -0.02 2.02 16 Total: -1.00 -68.08 333.90 -4.64 -72.71 By element: Atomic # 1 Polarization: 47.94 SS G_CDS: -2.46 Total: 45.48 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 6.76 Total: 25.94 kcal Atomic # 7 Polarization: -143.44 SS G_CDS: -10.78 Total: -154.22 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.05 Total: -27.04 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 1.88 Total: 37.12 kcal Total: -68.08 -4.64 -72.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596119620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.702 kcal (2) G-P(sol) polarization free energy of solvation -68.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds