Wall clock time and date at job start Tue Mar 31 2020 03:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34756 * 119.71349 * 2 1 4 4 O 1.21913 * 120.20699 * 359.97438 * 3 2 1 5 5 C 1.40375 * 119.59618 * 180.27226 * 3 2 1 6 6 C 1.36724 * 119.05153 * 359.49721 * 5 3 2 7 7 N 1.37143 * 120.29289 * 180.24439 * 6 5 3 8 8 C 1.46844 * 110.99880 * 62.20549 * 7 6 5 9 9 C 1.53042 * 109.52166 * 174.16057 * 8 7 6 10 10 C 1.53116 * 109.27907 * 59.18230 * 9 8 7 11 11 C 1.50696 * 109.52244 * 182.43896 * 10 9 8 12 12 H 1.08001 * 119.99789 * 119.68464 * 11 10 9 13 13 C 1.37876 * 120.00413 * 299.68002 * 11 10 9 14 14 N 1.31511 * 120.00248 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99597 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.46865 * 89.99989 * 15 13 11 17 17 H 1.48500 * 109.46666 * 209.99587 * 15 13 11 18 18 H 1.48492 * 109.47274 * 329.99823 * 15 13 11 19 19 C 1.53117 * 109.16266 * 302.34668 * 10 9 8 20 20 C 1.46852 * 111.00051 * 297.99826 * 7 6 5 21 21 N 1.37378 * 119.41048 * 0.52313 * 6 5 3 22 22 C 1.46498 * 119.80639 * 179.71897 * 21 6 5 23 23 C 1.34538 * 119.71697 * 180.02562 * 2 1 3 24 24 O 1.21589 * 119.50583 * 359.97438 * 23 2 1 25 25 H 1.08995 * 109.46945 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46606 * 119.99669 * 1 2 3 27 27 H 1.08994 * 109.47521 * 240.00016 * 1 2 3 28 28 H 1.07997 * 120.47655 * 179.72108 * 5 3 2 29 29 H 1.08993 * 109.46836 * 294.17886 * 8 7 6 30 30 H 1.09001 * 109.46482 * 54.15120 * 8 7 6 31 31 H 1.09005 * 109.50318 * 299.23921 * 9 8 7 32 32 H 1.09006 * 109.50175 * 179.12457 * 9 8 7 33 33 H 1.09004 * 109.52273 * 62.25196 * 10 9 8 34 34 H 0.97002 * 119.99873 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.49957 * 297.71367 * 19 10 9 36 36 H 1.08995 * 109.53706 * 177.61322 * 19 10 9 37 37 H 1.08998 * 109.46279 * 305.86123 * 20 7 6 38 38 H 1.09009 * 109.45783 * 65.82220 * 20 7 6 39 39 H 1.09004 * 109.46366 * 174.94352 * 22 21 6 40 40 H 1.08993 * 109.47610 * 294.93679 * 22 21 6 41 41 H 1.08994 * 109.47155 * 54.94667 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1330 1.1704 0.0000 4 8 1.5219 2.2253 -0.0005 5 6 3.5367 1.1675 -0.0058 6 6 4.1982 -0.0290 -0.0009 7 7 5.5693 -0.0615 -0.0013 8 6 6.1110 0.5704 1.2085 9 6 7.6300 0.3875 1.2446 10 6 8.2455 1.0231 -0.0051 11 6 9.7350 0.7941 -0.0050 12 1 10.1969 0.2455 -0.8125 13 6 10.5080 1.2848 1.0258 14 7 11.8077 1.0845 1.0261 15 14 9.7087 2.2332 2.4228 16 1 9.3137 1.2895 3.4993 17 1 10.6731 3.2248 2.9631 18 1 8.5043 2.9389 1.9166 19 6 7.6291 0.3812 -1.2510 20 6 6.1101 0.5641 -1.2148 21 7 3.4773 -1.1985 -0.0013 22 6 4.1772 -2.4854 -0.0023 23 6 2.1320 -1.1684 -0.0005 24 8 1.5098 -2.2131 -0.0005 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3632 -0.5138 -0.8900 27 1 -0.3634 -0.5138 0.8899 28 1 4.0863 2.0971 -0.0104 29 1 5.8733 1.6340 1.2003 30 1 5.6684 0.1063 2.0899 31 1 7.8681 -0.6760 1.2669 32 1 8.0336 0.8701 2.1348 33 1 8.0407 2.0938 -0.0077 34 1 12.3515 1.4294 1.7516 35 1 7.8672 -0.6823 -1.2680 36 1 8.0319 0.8586 -2.1442 37 1 5.6667 0.0957 -2.0934 38 1 5.8724 1.6280 -1.2117 39 1 3.4514 -3.2937 0.0881 40 1 4.7311 -2.5971 -0.9343 41 1 4.8695 -2.5231 0.8387 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596189544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:38 Heat of formation + Delta-G solvation = -11.784979 kcal Electronic energy + Delta-G solvation = -24552.015776 eV Core-core repulsion = 21047.496959 eV Total energy + Delta-G solvation = -3504.518818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.56633 -39.75177 -39.11976 -36.89641 -35.34163 -34.16502 -32.05526 -31.08035 -30.62689 -27.96757 -27.11218 -26.05716 -23.75036 -23.19037 -22.92442 -21.56468 -19.54140 -18.96564 -17.97757 -17.33894 -17.31159 -16.82720 -16.13770 -15.60241 -15.20145 -14.88390 -14.64168 -14.44492 -13.91987 -13.73405 -13.69530 -13.17791 -13.14359 -13.08010 -12.54358 -12.53985 -12.45189 -12.15391 -12.07583 -11.18031 -11.15497 -11.07014 -10.84382 -10.45075 -10.27615 -10.11608 -9.96034 -9.83050 -9.32320 -9.14855 -8.78280 -8.63366 -8.61185 -6.16132 -4.16036 0.69269 1.69183 1.81244 2.73832 3.17187 3.27748 3.28230 3.31515 3.58650 4.31142 4.36337 4.87725 4.97326 5.06928 5.11249 5.11450 5.18335 5.24417 5.27542 5.34643 5.38343 5.47750 5.52235 5.52806 5.63338 5.67585 5.75170 5.80636 6.04769 6.14899 6.26923 6.45271 6.53261 6.66467 6.86452 6.93950 7.08277 7.13126 7.33976 7.40870 7.65469 7.76458 8.42214 8.88058 9.45755 10.97169 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027410 B = 0.004274 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.276059 B = 6549.902332 C = 6937.358849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.559 5.559 3 C 0.555 3.445 4 O -0.527 6.527 5 C -0.343 4.343 6 C 0.406 3.594 7 N -0.518 5.518 8 C 0.065 3.935 9 C -0.118 4.118 10 C 0.012 3.988 11 C -0.513 4.513 12 H 0.075 0.925 13 C 0.070 3.930 14 N -0.899 5.899 15 Si 0.883 3.117 16 H -0.278 1.278 17 H -0.296 1.296 18 H -0.266 1.266 19 C -0.096 4.096 20 C 0.066 3.934 21 N -0.522 5.522 22 C 0.084 3.916 23 C 0.699 3.301 24 O -0.542 6.542 25 H 0.101 0.899 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.168 0.832 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.264 0.736 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.533 -4.135 -1.720 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.303 5.303 3 C 0.353 3.647 4 O -0.404 6.404 5 C -0.372 4.372 6 C 0.204 3.796 7 N -0.242 5.242 8 C -0.060 4.060 9 C -0.155 4.155 10 C -0.007 4.007 11 C -0.551 4.551 12 H 0.093 0.907 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.713 3.287 16 H -0.205 1.205 17 H -0.224 1.224 18 H -0.191 1.191 19 C -0.134 4.134 20 C -0.058 4.058 21 N -0.243 5.243 22 C -0.057 4.057 23 C 0.401 3.599 24 O -0.415 6.415 25 H 0.120 0.880 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.186 0.814 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.921 -4.721 -1.629 18.604 hybrid contribution -0.392 1.247 0.938 1.609 sum -18.312 -3.474 -0.690 18.652 Atomic orbital electron populations 1.21867 0.75511 1.05089 1.03592 1.46302 1.10413 1.06443 1.67116 1.16876 0.88672 0.82852 0.76311 1.90888 1.70375 1.29429 1.49688 1.22215 0.93286 0.98777 1.22906 1.18943 0.89732 0.84606 0.86270 1.58264 1.00276 1.59443 1.06213 1.22416 0.98346 0.96765 0.88434 1.22120 0.89743 1.02885 1.00778 1.19217 0.96282 0.95115 0.90091 1.20988 0.89230 1.35948 1.08956 0.90721 1.25026 0.94670 0.95493 0.97956 1.69888 1.04777 1.46045 1.33004 0.86912 0.79013 0.79932 0.82794 1.20503 1.22373 1.19076 1.21549 0.89687 1.02117 1.00001 1.22420 0.98254 0.96894 0.88270 1.45057 1.04744 1.08671 1.65825 1.22014 0.97456 0.81590 1.04653 1.15677 0.81124 0.84302 0.78758 1.90997 1.65361 1.30354 1.54832 0.88037 0.90491 0.90506 0.81422 0.93416 0.91215 0.90752 0.92501 0.95545 0.92583 0.91344 0.91313 0.91082 0.93333 0.88572 0.89976 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 9.98 59.85 0.60 1.40 16 2 N -0.56 -7.15 2.96 -131.90 -0.39 -7.54 16 3 C 0.55 7.90 7.40 -15.46 -0.11 7.79 16 4 O -0.53 -8.74 16.42 5.00 0.08 -8.66 16 5 C -0.34 -4.54 8.55 -39.33 -0.34 -4.88 16 6 C 0.41 5.13 5.38 -153.23 -0.82 4.31 16 7 N -0.52 -6.90 3.86 -173.11 -0.67 -7.56 16 8 C 0.07 0.96 5.12 -3.83 -0.02 0.94 16 9 C -0.12 -2.17 4.84 -26.65 -0.13 -2.30 16 10 C 0.01 0.24 1.75 -91.65 -0.16 0.08 16 11 C -0.51 -13.18 9.14 -34.44 -0.31 -13.49 16 12 H 0.07 2.09 7.99 -52.49 -0.42 1.68 16 13 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 14 N -0.90 -26.26 13.96 55.43 0.77 -25.49 16 15 Si 0.88 20.44 24.37 -169.99 -4.14 16.30 16 16 H -0.28 -6.23 6.89 56.52 0.39 -5.84 16 17 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -5.80 6.53 56.52 0.37 -5.44 16 19 C -0.10 -1.58 5.32 -26.65 -0.14 -1.73 16 20 C 0.07 0.89 5.11 -3.83 -0.02 0.87 16 21 N -0.52 -6.31 3.03 -128.30 -0.39 -6.70 16 22 C 0.08 0.83 10.02 59.85 0.60 1.43 16 23 C 0.70 9.19 8.12 -87.32 -0.71 8.48 16 24 O -0.54 -7.87 15.54 5.29 0.08 -7.79 16 25 H 0.10 1.00 6.88 -51.93 -0.36 0.64 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.17 2.18 7.05 -52.49 -0.37 1.81 16 29 H 0.05 0.70 7.39 -51.93 -0.38 0.32 16 30 H 0.07 0.94 8.10 -51.93 -0.42 0.51 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.06 1.14 3.38 -51.93 -0.18 0.96 16 33 H 0.03 0.56 7.19 -51.93 -0.37 0.19 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.05 0.65 7.38 -51.92 -0.38 0.26 16 39 H 0.10 0.92 6.87 -51.93 -0.36 0.56 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 322.46 15.07 4.86 4.86 Total: -1.00 -30.56 322.46 -7.26 -37.82 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.80 Total: 0.04 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -1.67 Total: 4.72 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.67 Total: -47.29 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.16 Total: -16.45 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.14 Total: 16.30 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.56 -7.26 -37.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596189544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.035 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds