Wall clock time and date at job start Tue Mar 31 2020 03:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34756 * 119.71349 * 2 1 4 4 O 1.21913 * 120.20699 * 359.97438 * 3 2 1 5 5 C 1.40375 * 119.59618 * 180.27226 * 3 2 1 6 6 C 1.36724 * 119.05153 * 359.49721 * 5 3 2 7 7 N 1.37143 * 120.29289 * 180.24439 * 6 5 3 8 8 C 1.46844 * 110.99880 * 62.20549 * 7 6 5 9 9 C 1.53042 * 109.52166 * 174.16057 * 8 7 6 10 10 C 1.53116 * 109.27907 * 59.18230 * 9 8 7 11 11 C 1.50696 * 109.52244 * 182.43896 * 10 9 8 12 12 H 1.08001 * 119.99789 * 119.68464 * 11 10 9 13 13 C 1.37876 * 120.00413 * 299.68002 * 11 10 9 14 14 N 1.31511 * 120.00248 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99597 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.46865 * 89.99989 * 15 13 11 17 17 H 1.48500 * 109.46666 * 209.99587 * 15 13 11 18 18 H 1.48492 * 109.47274 * 329.99823 * 15 13 11 19 19 C 1.53117 * 109.16266 * 302.34668 * 10 9 8 20 20 C 1.46852 * 111.00051 * 297.99826 * 7 6 5 21 21 N 1.37378 * 119.41048 * 0.52313 * 6 5 3 22 22 C 1.46498 * 119.80639 * 179.71897 * 21 6 5 23 23 C 1.34538 * 119.71697 * 180.02562 * 2 1 3 24 24 O 1.21589 * 119.50583 * 359.97438 * 23 2 1 25 25 H 1.08995 * 109.46945 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46606 * 119.99669 * 1 2 3 27 27 H 1.08994 * 109.47521 * 240.00016 * 1 2 3 28 28 H 1.07997 * 120.47655 * 179.72108 * 5 3 2 29 29 H 1.08993 * 109.46836 * 294.17886 * 8 7 6 30 30 H 1.09001 * 109.46482 * 54.15120 * 8 7 6 31 31 H 1.09005 * 109.50318 * 299.23921 * 9 8 7 32 32 H 1.09006 * 109.50175 * 179.12457 * 9 8 7 33 33 H 1.09004 * 109.52273 * 62.25196 * 10 9 8 34 34 H 0.97002 * 119.99873 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.49957 * 297.71367 * 19 10 9 36 36 H 1.08995 * 109.53706 * 177.61322 * 19 10 9 37 37 H 1.08998 * 109.46279 * 305.86123 * 20 7 6 38 38 H 1.09009 * 109.45783 * 65.82220 * 20 7 6 39 39 H 1.09004 * 109.46366 * 174.94352 * 22 21 6 40 40 H 1.08993 * 109.47610 * 294.93679 * 22 21 6 41 41 H 1.08994 * 109.47155 * 54.94667 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1330 1.1704 0.0000 4 8 1.5219 2.2253 -0.0005 5 6 3.5367 1.1675 -0.0058 6 6 4.1982 -0.0290 -0.0009 7 7 5.5693 -0.0615 -0.0013 8 6 6.1110 0.5704 1.2085 9 6 7.6300 0.3875 1.2446 10 6 8.2455 1.0231 -0.0051 11 6 9.7350 0.7941 -0.0050 12 1 10.1969 0.2455 -0.8125 13 6 10.5080 1.2848 1.0258 14 7 11.8077 1.0845 1.0261 15 14 9.7087 2.2332 2.4228 16 1 9.3137 1.2895 3.4993 17 1 10.6731 3.2248 2.9631 18 1 8.5043 2.9389 1.9166 19 6 7.6291 0.3812 -1.2510 20 6 6.1101 0.5641 -1.2148 21 7 3.4773 -1.1985 -0.0013 22 6 4.1772 -2.4854 -0.0023 23 6 2.1320 -1.1684 -0.0005 24 8 1.5098 -2.2131 -0.0005 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3632 -0.5138 -0.8900 27 1 -0.3634 -0.5138 0.8899 28 1 4.0863 2.0971 -0.0104 29 1 5.8733 1.6340 1.2003 30 1 5.6684 0.1063 2.0899 31 1 7.8681 -0.6760 1.2669 32 1 8.0336 0.8701 2.1348 33 1 8.0407 2.0938 -0.0077 34 1 12.3515 1.4294 1.7516 35 1 7.8672 -0.6823 -1.2680 36 1 8.0319 0.8586 -2.1442 37 1 5.6667 0.0957 -2.0934 38 1 5.8724 1.6280 -1.2117 39 1 3.4514 -3.2937 0.0881 40 1 4.7311 -2.5971 -0.9343 41 1 4.8695 -2.5231 0.8387 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596189544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:35 Heat of formation + Delta-G solvation = -31.317197 kcal Electronic energy + Delta-G solvation = -24552.862757 eV Core-core repulsion = 21047.496959 eV Total energy + Delta-G solvation = -3505.365798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -43.57981 -40.89658 -40.18818 -38.07625 -36.38231 -35.63694 -33.76394 -32.21498 -31.89559 -29.09703 -28.11410 -27.35280 -24.96199 -24.33451 -24.18096 -22.92359 -20.72833 -20.20906 -18.94508 -18.80777 -18.41232 -18.28011 -17.25479 -16.63067 -16.44120 -16.26045 -15.74186 -15.69271 -15.14779 -14.87399 -14.82791 -14.67729 -14.45279 -14.13339 -13.90957 -13.76350 -13.37808 -13.31098 -13.18323 -12.75828 -12.36991 -12.25207 -12.16177 -11.92501 -11.70261 -11.59019 -11.36473 -10.97711 -10.94255 -10.90228 -10.60390 -9.89717 -9.63000 -8.24540 -6.27796 -0.33642 0.74341 0.77478 1.33745 1.40644 1.49455 1.74793 2.25927 2.36522 2.52318 3.11642 3.38911 3.80851 4.00870 4.05199 4.10690 4.20024 4.30340 4.32786 4.38503 4.46221 4.50311 4.53350 4.54232 4.60540 4.65670 4.73748 4.74884 4.84705 4.88773 4.97496 5.07825 5.23009 5.30875 5.54732 5.69025 5.71104 5.81215 5.92582 6.11152 6.31726 6.37534 6.74392 6.80937 7.37941 8.92459 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027410 B = 0.004274 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.276059 B = 6549.902332 C = 6937.358849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.558 5.558 3 C 0.554 3.446 4 O -0.556 6.556 5 C -0.343 4.343 6 C 0.417 3.583 7 N -0.514 5.514 8 C 0.072 3.928 9 C -0.113 4.113 10 C 0.008 3.992 11 C -0.512 4.512 12 H 0.034 0.966 13 C 0.010 3.990 14 N -0.954 5.954 15 Si 0.944 3.056 16 H -0.264 1.264 17 H -0.307 1.307 18 H -0.241 1.241 19 C -0.089 4.089 20 C 0.074 3.926 21 N -0.518 5.518 22 C 0.081 3.919 23 C 0.698 3.302 24 O -0.556 6.556 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.172 0.828 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.025 0.975 34 H 0.263 0.737 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.068 -4.203 -1.315 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.302 5.302 3 C 0.353 3.647 4 O -0.436 6.436 5 C -0.372 4.372 6 C 0.215 3.785 7 N -0.238 5.238 8 C -0.053 4.053 9 C -0.151 4.151 10 C -0.011 4.011 11 C -0.550 4.550 12 H 0.052 0.948 13 C -0.187 4.187 14 N -0.595 5.595 15 Si 0.771 3.229 16 H -0.190 1.190 17 H -0.236 1.236 18 H -0.164 1.164 19 C -0.127 4.127 20 C -0.051 4.051 21 N -0.238 5.238 22 C -0.059 4.059 23 C 0.401 3.599 24 O -0.431 6.431 25 H 0.120 0.880 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.190 0.810 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.492 -4.820 -1.239 21.088 hybrid contribution 0.445 1.177 0.709 1.444 sum -20.047 -3.644 -0.530 20.383 Atomic orbital electron populations 1.22058 0.74140 1.05482 1.04773 1.46391 1.11452 1.06016 1.66292 1.16998 0.89019 0.82744 0.75943 1.90880 1.70942 1.30392 1.51356 1.22221 0.92888 0.99174 1.22925 1.18727 0.89086 0.84610 0.86123 1.58150 1.00631 1.59309 1.05744 1.22280 0.95506 0.97703 0.89807 1.21904 0.92510 1.01990 0.98670 1.19207 0.93043 0.95573 0.93237 1.21381 0.92400 1.34073 1.07153 0.94776 1.25888 0.94968 0.96857 1.00963 1.70059 1.06695 1.48414 1.34311 0.85923 0.78548 0.78614 0.79802 1.18994 1.23564 1.16435 1.21397 0.92060 1.01213 0.98029 1.22326 0.95666 0.97844 0.89242 1.45149 1.04500 1.09209 1.64925 1.22179 0.97549 0.80655 1.05498 1.15715 0.81358 0.84103 0.78697 1.90995 1.65688 1.30760 1.55637 0.88029 0.89298 0.89381 0.81020 0.92617 0.89180 0.91376 0.93792 0.95695 0.92811 0.91996 0.91512 0.88718 0.92433 0.88280 0.88941 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 9.98 127.77 1.27 2.63 16 2 N -0.56 -12.94 2.96 -807.76 -2.39 -15.33 16 3 C 0.55 14.45 7.40 84.76 0.63 15.08 16 4 O -0.56 -17.49 16.42 -5.03 -0.08 -17.58 16 5 C -0.34 -7.99 8.55 22.44 0.19 -7.79 16 6 C 0.42 9.04 5.38 131.56 0.71 9.75 16 7 N -0.51 -11.83 3.86 -701.59 -2.71 -14.54 16 8 C 0.07 1.85 5.12 86.33 0.44 2.30 16 9 C -0.11 -3.90 4.84 30.65 0.15 -3.75 16 10 C 0.01 0.33 1.75 -11.46 -0.02 0.31 16 11 C -0.51 -26.78 9.14 25.60 0.23 -26.54 16 12 H 0.03 2.00 7.99 -2.91 -0.02 1.97 16 13 C 0.01 0.53 5.45 84.65 0.46 1.00 16 14 N -0.95 -57.68 13.96 21.45 0.30 -57.38 16 15 Si 0.94 41.86 24.37 68.60 1.67 43.53 16 16 H -0.26 -11.02 6.89 99.48 0.69 -10.33 16 17 H -0.31 -14.09 7.11 99.48 0.71 -13.38 16 18 H -0.24 -9.59 6.53 99.48 0.65 -8.94 16 19 C -0.09 -2.80 5.32 30.65 0.16 -2.64 16 20 C 0.07 1.74 5.11 86.32 0.44 2.18 16 21 N -0.52 -10.82 3.03 -678.19 -2.05 -12.88 16 22 C 0.08 1.35 10.02 127.77 1.28 2.63 16 23 C 0.70 16.45 8.12 179.20 1.45 17.90 16 24 O -0.56 -14.75 15.54 -4.00 -0.06 -14.81 16 25 H 0.10 1.83 6.88 -2.39 -0.02 1.82 16 26 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.17 3.87 7.05 -2.91 -0.02 3.85 16 29 H 0.06 1.39 7.39 -2.39 -0.02 1.37 16 30 H 0.09 2.02 8.10 -2.39 -0.02 2.00 16 31 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.04 1.64 3.38 -2.38 -0.01 1.63 16 33 H 0.02 1.00 7.19 -2.39 -0.02 0.99 16 34 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.09 1.86 8.10 -2.39 -0.02 1.84 16 38 H 0.06 1.30 7.38 -2.38 -0.02 1.29 16 39 H 0.10 1.62 6.87 -2.38 -0.02 1.61 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -67.02 322.46 3.04 -63.98 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.96 Total: 11.97 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 7.41 Total: 13.05 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -6.85 Total: -100.13 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.14 Total: -32.39 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.67 Total: 43.53 kcal Total: -67.02 3.04 -63.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596189544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.658 kcal (2) G-P(sol) polarization free energy of solvation -67.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds