Wall clock time and date at job start Tue Mar 31 2020 03:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34761 * 119.71779 * 2 1 4 4 O 1.21915 * 120.20107 * 0.04140 * 3 2 1 5 5 C 1.40369 * 119.59472 * 180.02562 * 3 2 1 6 6 C 1.36714 * 119.06173 * 0.02562 * 5 3 2 7 7 N 1.37145 * 120.29722 * 179.97438 * 6 5 3 8 8 C 1.46847 * 111.00166 * 260.79079 * 7 6 5 9 9 C 1.53034 * 109.52279 * 185.83869 * 8 7 6 10 10 C 1.53115 * 109.28021 * 300.82371 * 9 8 7 11 11 C 1.53122 * 109.16163 * 57.65320 * 10 9 8 12 12 H 1.08991 * 109.50368 * 62.28758 * 11 10 9 13 13 C 1.50699 * 109.50441 * 182.40488 * 11 10 9 14 14 H 1.07998 * 120.00075 * 119.80272 * 13 11 10 15 15 C 1.37876 * 120.00268 * 299.80727 * 13 11 10 16 16 N 1.31516 * 120.00307 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 119.99795 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.46982 * 90.00476 * 17 15 13 19 19 H 1.48500 * 109.47221 * 210.00296 * 17 15 13 20 20 H 1.48498 * 109.47392 * 330.00539 * 17 15 13 21 21 C 1.46849 * 110.99901 * 25.00319 * 7 6 5 22 22 N 1.37381 * 119.40868 * 0.25216 * 6 5 3 23 23 C 1.46494 * 119.81273 * 179.74405 * 22 6 5 24 24 C 1.34547 * 119.71688 * 180.02562 * 2 1 3 25 25 O 1.21585 * 119.50233 * 0.02562 * 24 2 1 26 26 H 1.09003 * 109.46916 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47243 * 119.99695 * 1 2 3 28 28 H 1.08996 * 109.47637 * 239.99950 * 1 2 3 29 29 H 1.08005 * 120.47050 * 179.97438 * 5 3 2 30 30 H 1.08999 * 109.46496 * 305.85591 * 8 7 6 31 31 H 1.08997 * 109.46388 * 65.82312 * 8 7 6 32 32 H 1.08996 * 109.50344 * 180.87657 * 9 8 7 33 33 H 1.09007 * 109.53540 * 60.78360 * 9 8 7 34 34 H 1.09004 * 109.52317 * 297.74869 * 10 9 8 35 35 H 1.08999 * 109.52409 * 177.55609 * 10 9 8 36 36 H 0.96997 * 119.99923 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.45961 * 294.17508 * 21 7 6 38 38 H 1.08995 * 109.45992 * 54.15261 * 21 7 6 39 39 H 1.08999 * 109.47090 * 90.00114 * 23 22 6 40 40 H 1.08998 * 109.47388 * 210.00092 * 23 22 6 41 41 H 1.08998 * 109.47616 * 330.00410 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1330 1.1704 0.0000 4 8 1.5219 2.2253 0.0008 5 6 3.5367 1.1674 -0.0005 6 6 4.1982 -0.0291 -0.0016 7 7 5.5693 -0.0616 -0.0027 8 6 6.0891 -0.2928 -1.3564 9 6 7.6083 -0.4678 -1.2979 10 6 8.2395 0.7910 -0.6966 11 6 7.6455 1.0363 0.6932 12 1 7.8894 0.1984 1.3462 13 6 8.2178 2.3063 1.2680 14 1 7.5631 3.1259 1.5249 15 6 9.5774 2.4222 1.4658 16 7 10.0768 3.5304 1.9679 17 14 10.7099 1.0044 1.0220 18 1 11.1538 1.1482 -0.3878 19 1 11.8943 1.0179 1.9177 20 1 9.9819 -0.2798 1.1832 21 6 6.1252 1.1678 0.5769 22 7 3.4773 -1.1985 -0.0074 23 6 4.1771 -2.4855 -0.0142 24 6 2.1319 -1.1685 -0.0005 25 8 1.5097 -2.2131 -0.0015 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 -0.3634 -0.5138 0.8899 29 1 4.0864 2.0971 -0.0010 30 1 5.6355 -1.1931 -1.7709 31 1 5.8460 0.5605 -1.9895 32 1 7.9957 -0.6239 -2.3046 33 1 7.8523 -1.3296 -0.6765 34 1 8.0291 1.6463 -1.3388 35 1 9.3175 0.6535 -0.6129 36 1 11.0333 3.6117 2.1074 37 1 5.8819 2.0143 -0.0652 38 1 5.6980 1.3281 1.5667 39 1 4.3509 -2.8100 1.0117 40 1 3.5686 -3.2272 -0.5317 41 1 5.1324 -2.3770 -0.5277 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596326621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:42 Heat of formation + Delta-G solvation = -9.174049 kcal Electronic energy + Delta-G solvation = -24670.767462 eV Core-core repulsion = 21166.361863 eV Total energy + Delta-G solvation = -3504.405599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.47338 -39.80127 -38.96278 -36.82507 -35.19071 -33.97852 -32.64066 -31.22387 -30.45348 -27.65454 -27.02582 -25.46220 -24.84969 -23.28827 -22.26650 -21.68480 -19.50530 -18.88027 -17.90372 -17.32713 -17.20520 -16.67055 -16.02656 -15.50868 -15.23214 -14.82535 -14.63800 -14.48479 -14.08100 -13.76314 -13.47335 -13.38063 -13.06030 -12.97385 -12.71200 -12.57705 -12.45123 -12.28953 -11.44769 -11.27681 -11.19562 -11.11523 -10.80538 -10.36264 -10.24596 -10.22025 -9.95159 -9.83691 -9.42680 -9.18535 -8.95987 -8.65786 -8.24583 -6.18918 -4.20494 0.92318 1.78588 1.94833 2.87059 3.16990 3.28173 3.31187 3.42097 3.65373 4.29429 4.49475 4.84362 4.95582 5.02159 5.08042 5.12561 5.17122 5.22771 5.30579 5.37133 5.40361 5.50109 5.52723 5.56768 5.64251 5.75179 5.80092 5.89365 5.96054 6.08675 6.25842 6.37799 6.50020 6.54026 6.77965 6.93202 7.05782 7.20652 7.34975 7.47700 7.61271 7.92751 8.35828 8.83605 9.41615 10.93910 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025341 B = 0.004564 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.677554 B = 6133.581675 C = 6833.411325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.560 5.560 3 C 0.557 3.443 4 O -0.528 6.528 5 C -0.359 4.359 6 C 0.403 3.597 7 N -0.507 5.507 8 C 0.066 3.934 9 C -0.121 4.121 10 C -0.128 4.128 11 C 0.022 3.978 12 H 0.039 0.961 13 C -0.520 4.520 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.896 5.896 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.297 1.297 20 H -0.264 1.264 21 C 0.079 3.921 22 N -0.529 5.529 23 C 0.080 3.920 24 C 0.702 3.298 25 O -0.545 6.545 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.175 0.825 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.265 0.735 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.148 -11.523 -7.020 17.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.305 5.305 3 C 0.355 3.645 4 O -0.406 6.406 5 C -0.389 4.389 6 C 0.199 3.801 7 N -0.226 5.226 8 C -0.058 4.058 9 C -0.159 4.159 10 C -0.165 4.165 11 C 0.003 3.997 12 H 0.057 0.943 13 C -0.558 4.558 14 H 0.094 0.906 15 C -0.128 4.128 16 N -0.533 5.533 17 Si 0.717 3.283 18 H -0.206 1.206 19 H -0.224 1.224 20 H -0.189 1.189 21 C -0.046 4.046 22 N -0.251 5.251 23 C -0.061 4.061 24 C 0.404 3.596 25 O -0.419 6.419 26 H 0.120 0.880 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.192 0.808 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.509 -11.941 -6.689 17.883 hybrid contribution 0.676 -0.104 -0.494 0.844 sum -10.834 -12.046 -7.183 17.722 Atomic orbital electron populations 1.21836 0.75733 1.05040 1.03381 1.46316 1.10274 1.06488 1.67397 1.16869 0.88650 0.82717 0.76225 1.90880 1.70307 1.29415 1.49963 1.22079 0.93006 0.98590 1.25201 1.19017 0.89111 0.84811 0.87172 1.58098 1.00744 1.41473 1.22319 1.22247 0.97118 1.01175 0.85250 1.21722 0.92515 1.00626 1.01034 1.22114 0.99473 0.95504 0.99438 1.19206 0.88987 0.98779 0.92765 0.94316 1.20879 0.93002 0.99533 1.42382 0.90565 1.24965 0.98081 0.95440 0.94363 1.69884 1.13110 1.26065 1.44263 0.86855 0.80226 0.83650 0.77591 1.20570 1.22447 1.18888 1.22496 0.97861 0.85336 0.98906 1.44818 1.04859 1.08181 1.67226 1.22089 0.97770 0.81793 1.04475 1.15628 0.80908 0.84331 0.78686 1.90990 1.65401 1.30503 1.55002 0.88048 0.90703 0.90627 0.80782 0.90816 0.92653 0.91544 0.91289 0.91854 0.92881 0.92465 0.92711 0.89898 0.90474 0.89255 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 9.98 59.84 0.60 1.49 16 2 N -0.56 -7.76 2.96 -131.90 -0.39 -8.15 16 3 C 0.56 8.69 7.40 -15.46 -0.11 8.58 16 4 O -0.53 -9.55 16.42 5.00 0.08 -9.47 16 5 C -0.36 -5.32 8.91 -39.33 -0.35 -5.67 16 6 C 0.40 5.51 5.70 -153.23 -0.87 4.64 16 7 N -0.51 -7.13 3.89 -173.12 -0.67 -7.80 16 8 C 0.07 0.81 4.80 -3.84 -0.02 0.79 16 9 C -0.12 -1.65 6.09 -26.65 -0.16 -1.81 16 10 C -0.13 -2.32 4.74 -26.61 -0.13 -2.45 16 11 C 0.02 0.45 1.85 -91.69 -0.17 0.28 16 12 H 0.04 0.83 7.19 -51.93 -0.37 0.46 16 13 C -0.52 -13.26 9.14 -34.44 -0.31 -13.58 16 14 H 0.08 2.12 7.99 -52.49 -0.42 1.70 16 15 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 16 N -0.90 -26.04 13.96 55.43 0.77 -25.27 16 17 Si 0.89 20.30 24.36 -169.99 -4.14 16.16 16 18 H -0.28 -6.19 6.89 56.52 0.39 -5.80 16 19 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.26 -5.70 6.53 56.52 0.37 -5.33 16 21 C 0.08 1.34 3.58 -3.83 -0.01 1.33 16 22 N -0.53 -6.70 3.03 -128.29 -0.39 -7.09 16 23 C 0.08 0.79 9.98 59.84 0.60 1.39 16 24 C 0.70 9.78 8.12 -87.31 -0.71 9.07 16 25 O -0.55 -8.27 15.79 5.29 0.08 -8.19 16 26 H 0.10 1.10 6.88 -51.93 -0.36 0.74 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.17 2.64 6.04 -52.48 -0.32 2.33 16 30 H 0.07 0.73 6.29 -51.93 -0.33 0.40 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.05 1.05 3.37 -51.93 -0.17 0.88 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.05 0.93 6.73 -51.93 -0.35 0.58 16 38 H 0.08 1.47 8.00 -51.93 -0.42 1.05 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.82 7.39 -51.93 -0.38 0.43 16 41 H 0.10 0.85 5.23 -51.93 -0.27 0.58 16 LS Contribution 317.09 15.07 4.78 4.78 Total: -1.00 -30.77 317.09 -7.16 -37.92 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.53 Total: 1.16 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.76 Total: 5.94 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.68 Total: -48.31 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.17 Total: -17.66 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.14 Total: 16.16 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.77 -7.16 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596326621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.750 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds