Wall clock time and date at job start Tue Mar 31 2020 03:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34761 * 119.71779 * 2 1 4 4 O 1.21915 * 120.20107 * 0.04140 * 3 2 1 5 5 C 1.40369 * 119.59472 * 180.02562 * 3 2 1 6 6 C 1.36714 * 119.06173 * 0.02562 * 5 3 2 7 7 N 1.37145 * 120.29722 * 179.97438 * 6 5 3 8 8 C 1.46847 * 111.00166 * 260.79079 * 7 6 5 9 9 C 1.53034 * 109.52279 * 185.83869 * 8 7 6 10 10 C 1.53115 * 109.28021 * 300.82371 * 9 8 7 11 11 C 1.53122 * 109.16163 * 57.65320 * 10 9 8 12 12 H 1.08991 * 109.50368 * 62.28758 * 11 10 9 13 13 C 1.50699 * 109.50441 * 182.40488 * 11 10 9 14 14 H 1.07998 * 120.00075 * 119.80272 * 13 11 10 15 15 C 1.37876 * 120.00268 * 299.80727 * 13 11 10 16 16 N 1.31516 * 120.00307 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 119.99795 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.46982 * 90.00476 * 17 15 13 19 19 H 1.48500 * 109.47221 * 210.00296 * 17 15 13 20 20 H 1.48498 * 109.47392 * 330.00539 * 17 15 13 21 21 C 1.46849 * 110.99901 * 25.00319 * 7 6 5 22 22 N 1.37381 * 119.40868 * 0.25216 * 6 5 3 23 23 C 1.46494 * 119.81273 * 179.74405 * 22 6 5 24 24 C 1.34547 * 119.71688 * 180.02562 * 2 1 3 25 25 O 1.21585 * 119.50233 * 0.02562 * 24 2 1 26 26 H 1.09003 * 109.46916 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47243 * 119.99695 * 1 2 3 28 28 H 1.08996 * 109.47637 * 239.99950 * 1 2 3 29 29 H 1.08005 * 120.47050 * 179.97438 * 5 3 2 30 30 H 1.08999 * 109.46496 * 305.85591 * 8 7 6 31 31 H 1.08997 * 109.46388 * 65.82312 * 8 7 6 32 32 H 1.08996 * 109.50344 * 180.87657 * 9 8 7 33 33 H 1.09007 * 109.53540 * 60.78360 * 9 8 7 34 34 H 1.09004 * 109.52317 * 297.74869 * 10 9 8 35 35 H 1.08999 * 109.52409 * 177.55609 * 10 9 8 36 36 H 0.96997 * 119.99923 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.45961 * 294.17508 * 21 7 6 38 38 H 1.08995 * 109.45992 * 54.15261 * 21 7 6 39 39 H 1.08999 * 109.47090 * 90.00114 * 23 22 6 40 40 H 1.08998 * 109.47388 * 210.00092 * 23 22 6 41 41 H 1.08998 * 109.47616 * 330.00410 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1330 1.1704 0.0000 4 8 1.5219 2.2253 0.0008 5 6 3.5367 1.1674 -0.0005 6 6 4.1982 -0.0291 -0.0016 7 7 5.5693 -0.0616 -0.0027 8 6 6.0891 -0.2928 -1.3564 9 6 7.6083 -0.4678 -1.2979 10 6 8.2395 0.7910 -0.6966 11 6 7.6455 1.0363 0.6932 12 1 7.8894 0.1984 1.3462 13 6 8.2178 2.3063 1.2680 14 1 7.5631 3.1259 1.5249 15 6 9.5774 2.4222 1.4658 16 7 10.0768 3.5304 1.9679 17 14 10.7099 1.0044 1.0220 18 1 11.1538 1.1482 -0.3878 19 1 11.8943 1.0179 1.9177 20 1 9.9819 -0.2798 1.1832 21 6 6.1252 1.1678 0.5769 22 7 3.4773 -1.1985 -0.0074 23 6 4.1771 -2.4855 -0.0142 24 6 2.1319 -1.1685 -0.0005 25 8 1.5097 -2.2131 -0.0015 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 -0.3634 -0.5138 0.8899 29 1 4.0864 2.0971 -0.0010 30 1 5.6355 -1.1931 -1.7709 31 1 5.8460 0.5605 -1.9895 32 1 7.9957 -0.6239 -2.3046 33 1 7.8523 -1.3296 -0.6765 34 1 8.0291 1.6463 -1.3388 35 1 9.3175 0.6535 -0.6129 36 1 11.0333 3.6117 2.1074 37 1 5.8819 2.0143 -0.0652 38 1 5.6980 1.3281 1.5667 39 1 4.3509 -2.8100 1.0117 40 1 3.5686 -3.2272 -0.5317 41 1 5.1324 -2.3770 -0.5277 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596326621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:40 Heat of formation + Delta-G solvation = -29.431790 kcal Electronic energy + Delta-G solvation = -24671.645903 eV Core-core repulsion = 21166.361863 eV Total energy + Delta-G solvation = -3505.284041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -43.58969 -41.00864 -40.14364 -38.04864 -36.34480 -35.47033 -34.14362 -32.64624 -31.73198 -28.68761 -27.99304 -27.14439 -26.06023 -24.43572 -23.44937 -23.10181 -20.76791 -20.15074 -19.18426 -18.68596 -18.29441 -18.15771 -17.26919 -16.63105 -16.39786 -16.23755 -15.91568 -15.75851 -15.39677 -15.07556 -14.78715 -14.59697 -14.45780 -14.14685 -13.88778 -13.84940 -13.34695 -13.28076 -12.88347 -12.73426 -12.42739 -12.32138 -12.21421 -11.92068 -11.77343 -11.56877 -11.37240 -11.07077 -10.94155 -10.89011 -10.62251 -10.14708 -9.41771 -8.26287 -6.31640 -0.22252 0.74638 0.80759 1.35406 1.42223 1.52268 1.75377 2.28237 2.36719 2.51345 3.10011 3.42242 3.75313 3.95232 3.97732 4.08860 4.17831 4.30466 4.34695 4.38867 4.39891 4.46623 4.47260 4.55209 4.62421 4.66160 4.73571 4.77553 4.78916 4.90571 4.96954 5.04783 5.19633 5.31433 5.41454 5.54690 5.69624 5.79557 5.88121 6.08769 6.30968 6.35217 6.76531 6.78589 7.34386 8.90410 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025341 B = 0.004564 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.677554 B = 6133.581675 C = 6833.411325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.560 5.560 3 C 0.556 3.444 4 O -0.563 6.563 5 C -0.375 4.375 6 C 0.421 3.579 7 N -0.499 5.499 8 C 0.061 3.939 9 C -0.112 4.112 10 C -0.129 4.129 11 C 0.023 3.977 12 H 0.036 0.964 13 C -0.520 4.520 14 H 0.033 0.967 15 C 0.012 3.988 16 N -0.952 5.952 17 Si 0.951 3.049 18 H -0.265 1.265 19 H -0.308 1.308 20 H -0.237 1.237 21 C 0.091 3.909 22 N -0.522 5.522 23 C 0.073 3.927 24 C 0.701 3.299 25 O -0.554 6.554 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.164 0.836 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.040 0.960 36 H 0.265 0.735 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.368 -15.069 -8.785 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.304 5.304 3 C 0.356 3.644 4 O -0.443 6.443 5 C -0.405 4.405 6 C 0.216 3.784 7 N -0.218 5.218 8 C -0.061 4.061 9 C -0.150 4.150 10 C -0.167 4.167 11 C 0.004 3.996 12 H 0.054 0.946 13 C -0.559 4.559 14 H 0.052 0.948 15 C -0.185 4.185 16 N -0.592 5.592 17 Si 0.778 3.222 18 H -0.191 1.191 19 H -0.236 1.236 20 H -0.161 1.161 21 C -0.035 4.035 22 N -0.243 5.243 23 C -0.066 4.066 24 C 0.404 3.596 25 O -0.429 6.429 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.181 0.819 30 H 0.129 0.871 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.762 -15.546 -8.476 21.257 hybrid contribution 0.674 1.031 0.095 1.235 sum -11.088 -14.515 -8.381 20.097 Atomic orbital electron populations 1.22038 0.74228 1.05354 1.04758 1.46381 1.11388 1.06006 1.66602 1.16920 0.88853 0.82769 0.75856 1.90859 1.70911 1.30585 1.51936 1.21952 0.92912 0.98918 1.26746 1.18806 0.88790 0.84860 0.85982 1.58053 1.00731 1.39349 1.23639 1.22446 0.96635 1.03093 0.83957 1.21678 0.92722 0.97956 1.02601 1.22001 0.98815 0.98096 0.97774 1.19087 0.90955 0.95573 0.94028 0.94626 1.21250 0.92619 1.00540 1.41465 0.94847 1.25873 1.00018 0.98104 0.94486 1.70060 1.13400 1.28861 1.46895 0.85808 0.77594 0.81177 0.77596 1.19057 1.23612 1.16074 1.22124 0.95949 0.86774 0.98667 1.44932 1.04536 1.08709 1.66116 1.22375 0.98375 0.80489 1.05381 1.15672 0.81221 0.84054 0.78636 1.90991 1.65618 1.30655 1.55608 0.88313 0.89089 0.89459 0.81867 0.87109 0.92371 0.88355 0.90302 0.92560 0.94172 0.92661 0.93107 0.91231 0.89872 0.88130 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.57 9.98 127.77 1.27 2.85 16 2 N -0.56 -14.72 2.96 -807.75 -2.39 -17.11 16 3 C 0.56 17.16 7.40 84.76 0.63 17.79 16 4 O -0.56 -20.63 16.42 -5.04 -0.08 -20.71 16 5 C -0.38 -10.92 8.91 22.43 0.20 -10.72 16 6 C 0.42 10.57 5.70 131.55 0.75 11.32 16 7 N -0.50 -12.62 3.89 -701.62 -2.73 -15.35 16 8 C 0.06 1.23 4.80 86.32 0.41 1.65 16 9 C -0.11 -2.50 6.09 30.64 0.19 -2.31 16 10 C -0.13 -4.37 4.74 30.67 0.15 -4.23 16 11 C 0.02 0.91 1.85 -11.49 -0.02 0.89 16 12 H 0.04 1.45 7.19 -2.39 -0.02 1.44 16 13 C -0.52 -27.37 9.14 25.60 0.23 -27.13 16 14 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 15 C 0.01 0.67 5.45 84.65 0.46 1.13 16 16 N -0.95 -57.64 13.96 21.45 0.30 -57.34 16 17 Si 0.95 41.58 24.36 68.60 1.67 43.25 16 18 H -0.26 -10.88 6.89 99.48 0.69 -10.19 16 19 H -0.31 -13.89 7.11 99.48 0.71 -13.19 16 20 H -0.24 -9.24 6.53 99.48 0.65 -8.59 16 21 C 0.09 3.05 3.58 86.32 0.31 3.36 16 22 N -0.52 -11.61 3.03 -678.19 -2.05 -13.67 16 23 C 0.07 1.14 9.98 127.77 1.28 2.42 16 24 C 0.70 17.82 8.12 179.19 1.45 19.27 16 25 O -0.55 -15.24 15.79 -3.98 -0.06 -15.30 16 26 H 0.10 2.09 6.88 -2.39 -0.02 2.07 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.16 5.08 6.04 -2.91 -0.02 5.06 16 30 H 0.11 1.51 6.29 -2.39 -0.02 1.50 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.04 1.47 3.37 -2.39 -0.01 1.46 16 36 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.05 1.74 6.73 -2.39 -0.02 1.73 16 38 H 0.07 2.50 8.00 -2.39 -0.02 2.48 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.10 1.40 7.39 -2.39 -0.02 1.38 16 41 H 0.11 1.38 5.23 -2.39 -0.01 1.37 16 Total: -1.00 -69.34 317.09 2.94 -66.40 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.97 Total: 13.56 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: 7.31 Total: 16.27 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -6.87 Total: -103.46 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.15 Total: -36.01 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.67 Total: 43.25 kcal Total: -69.34 2.94 -66.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596326621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.965 kcal (2) G-P(sol) polarization free energy of solvation -69.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds