Wall clock time and date at job start Tue Mar 31 2020 03:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34759 * 119.71875 * 2 1 4 4 O 1.21924 * 120.19617 * 359.97438 * 3 2 1 5 5 C 1.40363 * 119.59856 * 179.71132 * 3 2 1 6 6 C 1.36717 * 119.05812 * 0.55447 * 5 3 2 7 7 N 1.37147 * 120.29621 * 179.73893 * 6 5 3 8 8 C 1.46847 * 110.99976 * 98.68023 * 7 6 5 9 9 C 1.53028 * 109.52289 * 174.16282 * 8 7 6 10 10 C 1.53115 * 109.28362 * 59.17763 * 9 8 7 11 11 C 1.53123 * 109.15886 * 302.34747 * 10 9 8 12 12 H 1.09002 * 109.50371 * 297.70988 * 11 10 9 13 13 C 1.50698 * 109.50354 * 177.63232 * 11 10 9 14 14 H 1.08003 * 120.00069 * 240.07770 * 13 11 10 15 15 C 1.37878 * 119.99970 * 60.07355 * 13 11 10 16 16 N 1.31514 * 119.99929 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99930 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47198 * 90.00672 * 17 15 13 19 19 H 1.48502 * 109.47503 * 210.00282 * 17 15 13 20 20 H 1.48502 * 109.47506 * 330.00439 * 17 15 13 21 21 C 1.46933 * 110.98351 * 334.45101 * 7 6 5 22 22 N 1.37372 * 119.40736 * 359.46705 * 6 5 3 23 23 C 1.46502 * 119.81191 * 180.25420 * 22 6 5 24 24 C 1.34543 * 119.71976 * 180.02562 * 2 1 3 25 25 O 1.21589 * 119.50048 * 0.02562 * 24 2 1 26 26 H 1.08994 * 109.46802 * 269.97818 * 1 2 3 27 27 H 1.09000 * 109.46865 * 29.98211 * 1 2 3 28 28 H 1.09005 * 109.47009 * 149.97969 * 1 2 3 29 29 H 1.08001 * 120.47446 * 180.31579 * 5 3 2 30 30 H 1.09001 * 109.46124 * 54.13974 * 8 7 6 31 31 H 1.09004 * 109.46016 * 294.17493 * 8 7 6 32 32 H 1.09005 * 109.50095 * 299.23443 * 9 8 7 33 33 H 1.09000 * 109.50556 * 179.12336 * 9 8 7 34 34 H 1.08994 * 109.52606 * 182.44091 * 10 9 8 35 35 H 1.08997 * 109.52166 * 62.25031 * 10 9 8 36 36 H 0.97004 * 119.99788 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.45389 * 65.84209 * 21 7 6 38 38 H 1.09002 * 109.51493 * 305.83729 * 21 7 6 39 39 H 1.08999 * 109.47137 * 90.00007 * 23 22 6 40 40 H 1.09002 * 109.47079 * 210.00286 * 23 22 6 41 41 H 1.09004 * 109.46866 * 329.99584 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1331 1.1703 0.0000 4 8 1.5219 2.2253 -0.0005 5 6 3.5367 1.1674 0.0061 6 6 4.1982 -0.0290 0.0005 7 7 5.5693 -0.0615 0.0009 8 6 6.0900 -0.2875 1.3552 9 6 7.6091 -0.4627 1.2965 10 6 8.2399 0.7938 0.6901 11 6 7.6451 1.0338 -0.7003 12 1 7.8887 0.1934 -1.3503 13 6 8.2178 2.3012 -1.2806 14 1 7.5632 3.1194 -1.5422 15 6 9.5776 2.4163 -1.4774 16 7 10.3748 1.4199 -1.1593 17 14 10.2874 3.9870 -2.1974 18 1 10.6178 4.9300 -1.0988 19 1 11.5193 3.6682 -2.9631 20 1 9.2897 4.6117 -3.1027 21 6 6.1249 1.1664 -0.5845 22 7 3.4774 -1.1984 0.0000 23 6 4.1772 -2.4855 -0.0004 24 6 2.1320 -1.1685 -0.0005 25 8 1.5098 -2.2131 -0.0015 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 4.0863 2.0971 0.0114 30 1 5.6365 -1.1863 1.7733 31 1 5.8472 0.5683 1.9851 32 1 7.8521 -1.3267 0.6779 33 1 7.9971 -0.6150 2.3036 34 1 9.3179 0.6561 0.6064 35 1 8.0299 1.6515 1.3292 36 1 11.3314 1.5007 -1.2982 37 1 5.8820 2.0153 0.0546 38 1 5.6975 1.3233 -1.5749 39 1 4.3507 -2.8050 1.0272 40 1 3.5689 -3.2296 -0.5146 41 1 5.1327 -2.3793 -0.5142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596326622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:45 Heat of formation + Delta-G solvation = -19.767251 kcal Electronic energy + Delta-G solvation = -24579.260730 eV Core-core repulsion = 21074.395775 eV Total energy + Delta-G solvation = -3504.864955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.39610 -39.59997 -38.89315 -36.64576 -35.13570 -33.87016 -32.45806 -30.86492 -30.14046 -27.55200 -26.89685 -25.27178 -24.64553 -23.22762 -21.99209 -21.78631 -19.31046 -18.77084 -17.84944 -17.16595 -17.11999 -16.35839 -15.71664 -15.40540 -15.00102 -14.68612 -14.59116 -14.49009 -13.88274 -13.62947 -13.29648 -13.10952 -12.96162 -12.74550 -12.62700 -12.40825 -12.31596 -12.01290 -11.22523 -11.04933 -11.01055 -10.89736 -10.82976 -10.37894 -10.21677 -10.05705 -9.79181 -9.74643 -9.45431 -9.03060 -8.83682 -8.44654 -8.12156 -6.12664 -4.19461 1.01012 1.85670 2.00147 2.93681 3.24273 3.31920 3.35084 3.48800 3.79329 4.35473 4.59383 5.00505 5.09904 5.14563 5.19241 5.24396 5.26209 5.33848 5.37465 5.49034 5.58193 5.60988 5.61753 5.70042 5.73717 5.90966 6.05594 6.15139 6.31801 6.37349 6.51451 6.60264 6.78573 7.02752 7.09451 7.25312 7.34551 7.53407 7.59492 7.81718 7.95286 7.98621 8.25649 8.83565 9.46485 10.93486 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.004371 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.975321 B = 6404.804991 C = 7196.672156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.561 5.561 3 C 0.557 3.443 4 O -0.531 6.531 5 C -0.364 4.364 6 C 0.405 3.595 7 N -0.504 5.504 8 C 0.069 3.931 9 C -0.118 4.118 10 C -0.116 4.116 11 C 0.056 3.944 12 H 0.038 0.962 13 C -0.519 4.519 14 H 0.057 0.943 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.069 3.931 22 N -0.528 5.528 23 C 0.079 3.921 24 C 0.701 3.299 25 O -0.547 6.547 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.173 0.827 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.036 0.964 36 H 0.261 0.739 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.869 -6.881 4.669 13.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.305 5.305 3 C 0.356 3.644 4 O -0.408 6.408 5 C -0.394 4.394 6 C 0.200 3.800 7 N -0.222 5.222 8 C -0.055 4.055 9 C -0.156 4.156 10 C -0.154 4.154 11 C 0.037 3.963 12 H 0.056 0.944 13 C -0.557 4.557 14 H 0.075 0.925 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.056 4.056 22 N -0.250 5.250 23 C -0.062 4.062 24 C 0.404 3.596 25 O -0.421 6.421 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.190 0.810 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.193 -7.455 4.393 14.148 hybrid contribution 0.311 1.389 -0.021 1.423 sum -10.882 -6.066 4.372 13.204 Atomic orbital electron populations 1.21829 0.75809 1.04698 1.03566 1.46337 1.10225 1.06521 1.67415 1.16868 0.88637 0.82631 0.76308 1.90878 1.70430 1.29443 1.50087 1.22042 0.92907 0.98622 1.25838 1.19115 0.89443 0.84736 0.86687 1.58102 1.00318 1.41450 1.22348 1.22245 0.97970 1.00566 0.84717 1.21748 0.91583 1.01710 1.00581 1.21740 1.03690 0.92980 0.96947 1.18726 0.85793 0.97944 0.93815 0.94420 1.21050 0.92244 1.00354 1.42093 0.92452 1.24902 0.97083 0.96390 0.95208 1.69865 1.04044 1.30924 1.47724 0.86582 0.78659 0.83450 0.79271 1.20650 1.21210 1.19829 1.22746 0.99633 0.85218 0.97985 1.44822 1.04808 1.08305 1.67022 1.22078 0.98671 0.81783 1.03697 1.15646 0.81001 0.84355 0.78584 1.90981 1.65415 1.30502 1.55232 0.91183 0.89007 0.89337 0.80970 0.91477 0.93250 0.91571 0.92305 0.88478 0.94474 0.92866 0.93423 0.90692 0.91107 0.89123 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.11 59.85 0.61 1.54 16 2 N -0.56 -8.08 2.96 -131.90 -0.39 -8.47 16 3 C 0.56 9.03 7.40 -15.47 -0.11 8.92 16 4 O -0.53 -9.87 16.67 4.99 0.08 -9.79 16 5 C -0.36 -5.68 8.92 -39.33 -0.35 -6.03 16 6 C 0.40 5.91 5.69 -153.23 -0.87 5.04 16 7 N -0.50 -7.66 3.53 -173.05 -0.61 -8.27 16 8 C 0.07 0.95 5.18 -3.84 -0.02 0.93 16 9 C -0.12 -1.84 6.09 -26.66 -0.16 -2.01 16 10 C -0.12 -2.34 5.03 -26.61 -0.13 -2.47 16 11 C 0.06 1.22 2.26 -91.69 -0.21 1.01 16 12 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 13 C -0.52 -12.93 8.56 -34.44 -0.29 -13.22 16 14 H 0.06 1.42 7.74 -52.48 -0.41 1.02 16 15 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -23.39 11.36 55.43 0.63 -22.76 16 17 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.07 1.25 3.60 -3.79 -0.01 1.23 16 22 N -0.53 -7.12 3.03 -128.29 -0.39 -7.51 16 23 C 0.08 0.85 9.23 59.85 0.55 1.40 16 24 C 0.70 10.21 8.12 -87.31 -0.71 9.50 16 25 O -0.55 -8.56 15.34 5.29 0.08 -8.48 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 1.01 7.40 -51.93 -0.38 0.63 16 28 H 0.09 0.92 7.37 -51.93 -0.38 0.54 16 29 H 0.17 2.74 6.05 -52.49 -0.32 2.42 16 30 H 0.07 0.78 6.81 -51.93 -0.35 0.43 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 2.27 6.15 -51.93 -0.32 1.95 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 37 H 0.05 0.86 6.72 -51.93 -0.35 0.51 16 38 H 0.07 1.38 8.01 -51.93 -0.42 0.97 16 39 H 0.07 0.65 7.65 -51.93 -0.40 0.25 16 40 H 0.09 0.93 7.38 -51.93 -0.38 0.55 16 41 H 0.10 1.12 7.34 -51.93 -0.38 0.74 16 LS Contribution 325.03 15.07 4.90 4.90 Total: -1.00 -28.56 325.03 -8.30 -36.86 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.76 Total: 0.99 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -1.81 Total: 7.45 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.76 Total: -47.00 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.16 Total: -18.27 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.56 -8.30 -36.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596326622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.090 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds