Wall clock time and date at job start Tue Mar 31 2020 03:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34759 * 119.71875 * 2 1 4 4 O 1.21924 * 120.19617 * 359.97438 * 3 2 1 5 5 C 1.40363 * 119.59856 * 179.71132 * 3 2 1 6 6 C 1.36717 * 119.05812 * 0.55447 * 5 3 2 7 7 N 1.37147 * 120.29621 * 179.73893 * 6 5 3 8 8 C 1.46847 * 110.99976 * 98.68023 * 7 6 5 9 9 C 1.53028 * 109.52289 * 174.16282 * 8 7 6 10 10 C 1.53115 * 109.28362 * 59.17763 * 9 8 7 11 11 C 1.53123 * 109.15886 * 302.34747 * 10 9 8 12 12 H 1.09002 * 109.50371 * 297.70988 * 11 10 9 13 13 C 1.50698 * 109.50354 * 177.63232 * 11 10 9 14 14 H 1.08003 * 120.00069 * 240.07770 * 13 11 10 15 15 C 1.37878 * 119.99970 * 60.07355 * 13 11 10 16 16 N 1.31514 * 119.99929 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99930 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47198 * 90.00672 * 17 15 13 19 19 H 1.48502 * 109.47503 * 210.00282 * 17 15 13 20 20 H 1.48502 * 109.47506 * 330.00439 * 17 15 13 21 21 C 1.46933 * 110.98351 * 334.45101 * 7 6 5 22 22 N 1.37372 * 119.40736 * 359.46705 * 6 5 3 23 23 C 1.46502 * 119.81191 * 180.25420 * 22 6 5 24 24 C 1.34543 * 119.71976 * 180.02562 * 2 1 3 25 25 O 1.21589 * 119.50048 * 0.02562 * 24 2 1 26 26 H 1.08994 * 109.46802 * 269.97818 * 1 2 3 27 27 H 1.09000 * 109.46865 * 29.98211 * 1 2 3 28 28 H 1.09005 * 109.47009 * 149.97969 * 1 2 3 29 29 H 1.08001 * 120.47446 * 180.31579 * 5 3 2 30 30 H 1.09001 * 109.46124 * 54.13974 * 8 7 6 31 31 H 1.09004 * 109.46016 * 294.17493 * 8 7 6 32 32 H 1.09005 * 109.50095 * 299.23443 * 9 8 7 33 33 H 1.09000 * 109.50556 * 179.12336 * 9 8 7 34 34 H 1.08994 * 109.52606 * 182.44091 * 10 9 8 35 35 H 1.08997 * 109.52166 * 62.25031 * 10 9 8 36 36 H 0.97004 * 119.99788 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.45389 * 65.84209 * 21 7 6 38 38 H 1.09002 * 109.51493 * 305.83729 * 21 7 6 39 39 H 1.08999 * 109.47137 * 90.00007 * 23 22 6 40 40 H 1.09002 * 109.47079 * 210.00286 * 23 22 6 41 41 H 1.09004 * 109.46866 * 329.99584 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1331 1.1703 0.0000 4 8 1.5219 2.2253 -0.0005 5 6 3.5367 1.1674 0.0061 6 6 4.1982 -0.0290 0.0005 7 7 5.5693 -0.0615 0.0009 8 6 6.0900 -0.2875 1.3552 9 6 7.6091 -0.4627 1.2965 10 6 8.2399 0.7938 0.6901 11 6 7.6451 1.0338 -0.7003 12 1 7.8887 0.1934 -1.3503 13 6 8.2178 2.3012 -1.2806 14 1 7.5632 3.1194 -1.5422 15 6 9.5776 2.4163 -1.4774 16 7 10.3748 1.4199 -1.1593 17 14 10.2874 3.9870 -2.1974 18 1 10.6178 4.9300 -1.0988 19 1 11.5193 3.6682 -2.9631 20 1 9.2897 4.6117 -3.1027 21 6 6.1249 1.1664 -0.5845 22 7 3.4774 -1.1984 0.0000 23 6 4.1772 -2.4855 -0.0004 24 6 2.1320 -1.1685 -0.0005 25 8 1.5098 -2.2131 -0.0015 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 4.0863 2.0971 0.0114 30 1 5.6365 -1.1863 1.7733 31 1 5.8472 0.5683 1.9851 32 1 7.8521 -1.3267 0.6779 33 1 7.9971 -0.6150 2.3036 34 1 9.3179 0.6561 0.6064 35 1 8.0299 1.6515 1.3292 36 1 11.3314 1.5007 -1.2982 37 1 5.8820 2.0153 0.0546 38 1 5.6975 1.3233 -1.5749 39 1 4.3507 -2.8050 1.0272 40 1 3.5689 -3.2296 -0.5146 41 1 5.1327 -2.3793 -0.5142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596326622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:45 Heat of formation + Delta-G solvation = -35.688393 kcal Electronic energy + Delta-G solvation = -24579.951122 eV Core-core repulsion = 21074.395775 eV Total energy + Delta-G solvation = -3505.555347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.56558 -40.89002 -40.11980 -37.94083 -36.32946 -35.46526 -33.89956 -32.23408 -31.60830 -28.62972 -27.92192 -27.04515 -25.91822 -24.42798 -23.28601 -23.25086 -20.64802 -20.13240 -19.07341 -18.48519 -18.26568 -17.93341 -17.06377 -16.60626 -16.41916 -16.16005 -15.84349 -15.75824 -15.19972 -14.91078 -14.48362 -14.45163 -14.41953 -14.12385 -13.89114 -13.49296 -13.30498 -13.18761 -12.83667 -12.71484 -12.57364 -12.27025 -12.13631 -11.88797 -11.77077 -11.52666 -11.35366 -11.05623 -10.92583 -10.71343 -10.38445 -10.11118 -9.36601 -8.07692 -6.19735 -0.19744 0.76429 0.81562 1.43595 1.46792 1.54563 1.77584 2.29455 2.43004 2.61258 3.21649 3.46119 3.82469 4.00987 4.10899 4.15076 4.27235 4.36980 4.39837 4.42267 4.46337 4.51966 4.53860 4.61298 4.69849 4.74791 4.80727 4.84455 4.90421 4.99427 5.12151 5.22631 5.38721 5.49875 5.67300 5.68292 5.94036 6.03156 6.09953 6.18766 6.35765 6.40201 6.79699 6.90982 7.48466 8.96674 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.004371 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.975321 B = 6404.804991 C = 7196.672156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.560 5.560 3 C 0.557 3.443 4 O -0.562 6.562 5 C -0.376 4.376 6 C 0.419 3.581 7 N -0.500 5.500 8 C 0.070 3.930 9 C -0.108 4.108 10 C -0.110 4.110 11 C 0.056 3.944 12 H 0.008 0.992 13 C -0.535 4.535 14 H 0.052 0.948 15 C 0.022 3.978 16 N -0.910 5.910 17 Si 0.945 3.055 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.084 3.916 22 N -0.522 5.522 23 C 0.074 3.926 24 C 0.701 3.299 25 O -0.555 6.555 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.166 0.834 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.260 0.740 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.755 -7.896 5.563 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.304 5.304 3 C 0.357 3.643 4 O -0.442 6.442 5 C -0.406 4.406 6 C 0.213 3.787 7 N -0.218 5.218 8 C -0.053 4.053 9 C -0.145 4.145 10 C -0.149 4.149 11 C 0.037 3.963 12 H 0.026 0.974 13 C -0.574 4.574 14 H 0.071 0.929 15 C -0.177 4.177 16 N -0.549 5.549 17 Si 0.772 3.228 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.042 4.042 22 N -0.243 5.243 23 C -0.066 4.066 24 C 0.404 3.596 25 O -0.430 6.430 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.183 0.817 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.093 -8.506 5.293 15.704 hybrid contribution 0.592 1.649 -0.315 1.780 sum -11.501 -6.857 4.978 14.286 Atomic orbital electron populations 1.22042 0.74180 1.05273 1.04780 1.46398 1.11390 1.05984 1.66600 1.16891 0.88779 0.82696 0.75960 1.90860 1.70974 1.30508 1.51881 1.21958 0.92883 0.98865 1.26876 1.18894 0.88892 0.84933 0.85933 1.58016 1.00648 1.39785 1.23326 1.22328 0.96725 1.02387 0.83873 1.21616 0.92590 0.98868 1.01475 1.21539 1.01866 0.95227 0.96222 1.18608 0.88326 0.95394 0.93996 0.97389 1.21446 0.92510 1.01461 1.41951 0.92945 1.25547 0.97609 0.98776 0.95793 1.69987 1.04026 1.32270 1.48641 0.85748 0.77851 0.80587 0.78603 1.20316 1.21186 1.19664 1.22360 0.97168 0.86581 0.98087 1.44935 1.04585 1.08757 1.66037 1.22325 0.98429 0.80516 1.05364 1.15679 0.81203 0.84161 0.78551 1.90983 1.65588 1.30662 1.55791 0.89691 0.88932 0.88250 0.81707 0.87996 0.92845 0.91683 0.89802 0.91856 0.95165 0.93054 0.93237 0.91429 0.88759 0.88527 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.63 10.11 127.77 1.29 2.92 16 2 N -0.56 -15.20 2.96 -807.73 -2.39 -17.59 16 3 C 0.56 17.54 7.40 84.76 0.63 18.17 16 4 O -0.56 -20.72 16.67 -5.07 -0.08 -20.80 16 5 C -0.38 -11.32 8.92 22.43 0.20 -11.12 16 6 C 0.42 11.40 5.69 131.56 0.75 12.15 16 7 N -0.50 -14.26 3.53 -701.39 -2.48 -16.74 16 8 C 0.07 1.73 5.18 86.32 0.45 2.18 16 9 C -0.11 -3.13 6.09 30.64 0.19 -2.94 16 10 C -0.11 -4.45 5.03 30.67 0.15 -4.30 16 11 C 0.06 2.45 2.26 -11.49 -0.03 2.43 16 12 H 0.01 0.39 8.14 -2.39 -0.02 0.38 16 13 C -0.54 -27.10 8.56 25.60 0.22 -26.89 16 14 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 15 C 0.02 1.15 5.30 84.66 0.45 1.60 16 16 N -0.91 -48.91 11.36 21.45 0.24 -48.67 16 17 Si 0.95 41.58 29.54 68.60 2.03 43.60 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 C 0.08 2.99 3.60 86.31 0.31 3.30 16 22 N -0.52 -12.69 3.03 -678.17 -2.05 -14.74 16 23 C 0.07 1.34 9.23 127.77 1.18 2.52 16 24 C 0.70 18.74 8.12 179.19 1.45 20.20 16 25 O -0.56 -15.91 15.34 -4.00 -0.06 -15.97 16 26 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.94 7.40 -2.39 -0.02 1.92 16 28 H 0.10 1.86 7.37 -2.38 -0.02 1.85 16 29 H 0.17 5.19 6.05 -2.91 -0.02 5.17 16 30 H 0.10 1.90 6.81 -2.39 -0.02 1.88 16 31 H 0.05 1.33 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 3.01 6.15 -2.39 -0.01 2.99 16 35 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.26 13.46 8.31 -92.70 -0.77 12.69 16 37 H 0.05 1.76 6.72 -2.39 -0.02 1.74 16 38 H 0.07 2.49 8.01 -2.39 -0.02 2.48 16 39 H 0.09 1.32 7.65 -2.39 -0.02 1.30 16 40 H 0.10 1.69 7.38 -2.39 -0.02 1.68 16 41 H 0.10 1.94 7.34 -2.39 -0.02 1.92 16 Total: -1.00 -61.72 325.03 3.49 -58.23 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.04 Total: 12.46 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 7.24 Total: 20.21 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -6.67 Total: -97.73 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.15 Total: -36.77 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -61.72 3.49 -58.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596326622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.541 kcal (2) G-P(sol) polarization free energy of solvation -61.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds