Wall clock time and date at job start Tue Mar 31 2020 03:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34411 * 124.34850 * 2 1 4 4 O 1.21289 * 124.94423 * 0.45180 * 3 2 1 5 5 C 1.51284 * 110.11906 * 180.42807 * 3 2 1 6 6 C 1.54625 * 104.19142 * 16.25241 * 5 3 2 7 7 C 1.46760 * 124.34866 * 180.02562 * 2 1 3 8 8 H 1.08995 * 110.25078 * 282.04936 * 7 2 1 9 9 C 1.53002 * 110.24415 * 43.96584 * 7 2 1 10 10 C 1.50707 * 109.46755 * 185.52471 * 9 7 2 11 11 O 1.21272 * 120.00157 * 6.26817 * 10 9 7 12 12 N 1.34781 * 119.99428 * 186.27423 * 10 9 7 13 13 C 1.46502 * 119.99418 * 179.97438 * 12 10 9 14 14 C 1.50694 * 109.47111 * 269.99646 * 13 12 10 15 15 H 1.07999 * 120.00155 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00300 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00508 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99774 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47100 * 90.00284 * 18 16 14 20 20 H 1.48499 * 109.47265 * 210.00224 * 18 16 14 21 21 H 1.48503 * 109.47153 * 330.00010 * 18 16 14 22 22 C 1.46496 * 120.00376 * 359.97438 * 12 10 9 23 23 C 1.53003 * 109.47046 * 270.00351 * 22 12 10 24 24 C 1.47202 * 109.47017 * 179.97438 * 23 22 12 25 25 N 7.01923 * 61.70225 * 222.48461 * 2 1 3 26 26 H 1.09011 * 109.46816 * 264.91086 * 1 2 3 27 27 H 1.08997 * 109.47541 * 24.90939 * 1 2 3 28 28 H 1.08999 * 109.46988 * 144.91522 * 1 2 3 29 29 H 1.08999 * 110.48686 * 134.92716 * 5 3 2 30 30 H 1.08999 * 110.48679 * 257.44516 * 5 3 2 31 31 H 1.08998 * 110.97387 * 217.08619 * 6 5 3 32 32 H 1.09006 * 110.97483 * 93.31741 * 6 5 3 33 33 H 1.08996 * 109.47211 * 65.52587 * 9 7 2 34 34 H 1.09000 * 109.47009 * 305.52059 * 9 7 2 35 35 H 1.09001 * 109.47053 * 29.99983 * 13 12 10 36 36 H 1.09002 * 109.47108 * 149.99439 * 13 12 10 37 37 H 0.96997 * 120.00573 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.47122 * 150.00718 * 22 12 10 39 39 H 1.08999 * 109.46799 * 29.99751 * 22 12 10 40 40 H 1.09004 * 109.47355 * 60.00037 * 23 22 12 41 41 H 1.09003 * 109.47448 * 299.99774 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1097 0.0000 4 8 1.7946 2.2442 0.0078 5 6 3.6898 0.7379 -0.0106 6 6 3.7009 -0.7485 -0.4365 7 6 2.2931 -1.2117 -0.0005 8 1 2.3297 -1.6440 0.9993 9 6 1.7388 -2.2313 -0.9976 10 6 2.5179 -3.5166 -0.8871 11 8 3.3498 -3.6483 -0.0146 12 7 2.2901 -4.5196 -1.7581 13 6 3.0479 -5.7688 -1.6511 14 6 4.3009 -5.6691 -2.4823 15 1 4.5116 -4.7657 -3.0354 16 6 5.1780 -6.7314 -2.5376 17 7 6.2713 -6.6446 -3.2634 18 14 4.8134 -8.2943 -1.5816 19 1 4.0250 -9.2221 -2.4318 20 1 6.0898 -8.9448 -1.1908 21 1 4.0354 -7.9585 -0.3620 22 6 1.2849 -4.3606 -2.8119 23 6 -0.0735 -4.8414 -2.2975 24 6 -1.0837 -4.6811 -3.3562 25 7 -1.8625 -4.5578 -4.1742 26 1 -0.3633 -0.0912 1.0237 27 1 -0.3634 0.9320 -0.4328 28 1 -0.3633 -0.8409 -0.5907 29 1 4.2324 1.3461 -0.7343 30 1 4.1203 0.8551 0.9839 31 1 4.4754 -1.3010 0.0955 32 1 3.8264 -0.8445 -1.5151 33 1 1.8303 -1.8368 -2.0095 34 1 0.6889 -2.4226 -0.7757 35 1 3.3160 -5.9430 -0.6090 36 1 2.4372 -6.5963 -2.0122 37 1 6.8885 -7.3919 -3.3020 38 1 1.5737 -4.9508 -3.6815 39 1 1.2158 -3.3096 -3.0925 40 1 -0.3624 -4.2512 -1.4278 41 1 -0.0046 -5.8924 -2.0168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596894622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:51 Heat of formation + Delta-G solvation = -38.562247 kcal Electronic energy + Delta-G solvation = -23738.816733 eV Core-core repulsion = 20233.136766 eV Total energy + Delta-G solvation = -3505.679967 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.71556 -39.35975 -37.08706 -36.60497 -35.42774 -32.94903 -32.83232 -31.27294 -31.00545 -28.08128 -26.74154 -25.28852 -24.12745 -22.62358 -21.35413 -19.43099 -18.63805 -17.90239 -17.22496 -16.90343 -16.54638 -16.31076 -15.54069 -15.20718 -15.08937 -14.77252 -14.23912 -13.98244 -13.89265 -13.67887 -13.44568 -12.95697 -12.83029 -12.69098 -12.58653 -12.43750 -12.28800 -12.22099 -11.97999 -11.89705 -11.71481 -11.18193 -11.11008 -11.01282 -10.85479 -10.64519 -10.24087 -9.86973 -9.67563 -9.29507 -8.82584 -8.69357 -8.03237 -6.18443 -4.18669 2.51184 2.59232 2.68495 2.83612 3.07280 3.19237 3.28171 3.29700 3.46351 4.01822 4.28383 4.30131 4.41221 4.63334 4.78349 4.89538 4.91270 4.98989 5.07180 5.14415 5.16870 5.23634 5.27045 5.30780 5.43396 5.59072 5.62515 5.69898 5.72747 5.92973 6.06641 6.12449 6.37052 6.47567 6.80798 6.98650 7.07020 7.44705 7.48253 7.94813 8.08857 8.33685 8.68111 8.84897 9.40836 10.94658 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012954 B = 0.004909 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.943573 B = 5702.692476 C = 7322.004771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.620 5.620 3 C 0.518 3.482 4 O -0.541 6.541 5 C -0.156 4.156 6 C -0.123 4.123 7 C 0.147 3.853 8 H 0.095 0.905 9 C -0.155 4.155 10 C 0.516 3.484 11 O -0.528 6.528 12 N -0.591 5.591 13 C 0.215 3.785 14 C -0.533 4.533 15 H 0.076 0.924 16 C 0.074 3.926 17 N -0.895 5.895 18 Si 0.873 3.127 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.263 1.263 22 C 0.115 3.885 23 C -0.050 4.050 24 C 0.214 3.786 25 N -0.440 5.440 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.045 0.955 36 H 0.027 0.973 37 H 0.265 0.735 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.658 7.571 6.127 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.354 5.354 3 C 0.306 3.694 4 O -0.419 6.419 5 C -0.196 4.196 6 C -0.161 4.161 7 C 0.044 3.956 8 H 0.113 0.887 9 C -0.196 4.196 10 C 0.302 3.698 11 O -0.404 6.404 12 N -0.322 5.322 13 C 0.094 3.906 14 C -0.571 4.571 15 H 0.094 0.906 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.699 3.301 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.187 1.187 22 C -0.011 4.011 23 C -0.091 4.091 24 C -0.104 4.104 25 N -0.117 5.117 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.507 8.158 5.329 15.079 hybrid contribution 0.128 -1.131 0.560 1.268 sum -11.379 7.027 5.889 14.613 Atomic orbital electron populations 1.21574 0.78481 1.03218 1.01839 1.48286 1.06381 1.07413 1.73328 1.20980 0.89646 0.84067 0.74675 1.90704 1.79005 1.21194 1.50993 1.22379 0.94127 0.98301 1.04788 1.22686 0.96409 0.93920 1.03037 1.21466 0.90087 0.84025 1.00057 0.88746 1.22092 1.01097 0.94695 1.01682 1.20046 0.83442 0.84402 0.81954 1.90698 1.34016 1.80984 1.34721 1.47877 1.37606 1.17221 1.29459 1.19743 0.91661 0.80248 0.98900 1.21275 1.04139 1.02704 1.28975 0.90637 1.24848 0.94695 0.98471 0.94842 1.69881 1.11448 1.32090 1.39837 0.86906 0.78396 0.83708 0.81060 1.20104 1.20959 1.18749 1.21363 0.85168 1.02458 0.92126 1.19881 0.90450 1.05946 0.92865 1.29053 0.94000 0.93090 0.94291 1.81240 1.10943 1.09084 1.10471 0.92543 0.90566 0.91032 0.88066 0.87792 0.87842 0.89901 0.88479 0.88755 0.93712 0.95464 0.92455 0.88437 0.90236 0.87582 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.73 59.85 0.64 1.42 16 2 N -0.62 -6.73 3.18 -172.70 -0.55 -7.28 16 3 C 0.52 6.69 8.02 -10.86 -0.09 6.60 16 4 O -0.54 -8.90 17.53 5.55 0.10 -8.81 16 5 C -0.16 -1.62 6.86 -26.74 -0.18 -1.81 16 6 C -0.12 -1.38 5.93 -25.10 -0.15 -1.53 16 7 C 0.15 1.60 2.93 -67.01 -0.20 1.40 16 8 H 0.09 1.09 7.80 -51.93 -0.40 0.68 16 9 C -0.15 -1.60 3.67 -27.88 -0.10 -1.70 16 10 C 0.52 7.82 7.42 -10.98 -0.08 7.74 16 11 O -0.53 -10.14 14.73 5.56 0.08 -10.06 16 12 N -0.59 -9.21 2.46 -175.06 -0.43 -9.64 16 13 C 0.21 4.36 4.23 -5.20 -0.02 4.34 16 14 C -0.53 -13.58 9.94 -34.44 -0.34 -13.92 16 15 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 17 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 18 Si 0.87 19.70 27.47 -169.99 -4.67 15.03 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 22 C 0.12 1.29 5.19 -4.04 -0.02 1.27 16 23 C -0.05 -0.41 6.03 -29.52 -0.18 -0.59 16 24 C 0.21 2.24 15.43 -20.75 -0.32 1.92 16 25 N -0.44 -5.92 18.54 42.16 0.78 -5.14 16 26 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.08 0.71 7.82 -51.93 -0.41 0.30 16 28 H 0.07 0.46 6.37 -51.93 -0.33 0.13 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 1.28 7.87 -51.93 -0.41 0.87 16 32 H 0.08 0.95 7.80 -51.93 -0.41 0.55 16 33 H 0.10 0.93 6.90 -51.93 -0.36 0.57 16 34 H 0.09 0.71 5.92 -51.93 -0.31 0.40 16 35 H 0.04 0.99 6.48 -51.93 -0.34 0.66 16 36 H 0.03 0.51 7.50 -51.93 -0.39 0.12 16 37 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.10 1.22 8.07 -51.93 -0.42 0.80 16 39 H 0.08 0.74 6.27 -51.93 -0.33 0.41 16 40 H 0.11 0.63 7.42 -51.93 -0.39 0.24 16 41 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -34.31 345.64 -5.60 -39.91 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.76 Total: -1.14 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -1.14 Total: 7.03 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.58 Total: -47.18 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.18 Total: -18.86 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.67 Total: 15.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.31 -5.60 -39.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596894622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.345 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds