Wall clock time and date at job start Tue Mar 31 2020 03:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34411 * 124.34850 * 2 1 4 4 O 1.21289 * 124.94423 * 0.45180 * 3 2 1 5 5 C 1.51284 * 110.11906 * 180.42807 * 3 2 1 6 6 C 1.54625 * 104.19142 * 16.25241 * 5 3 2 7 7 C 1.46760 * 124.34866 * 180.02562 * 2 1 3 8 8 H 1.08995 * 110.25078 * 282.04936 * 7 2 1 9 9 C 1.53002 * 110.24415 * 43.96584 * 7 2 1 10 10 C 1.50707 * 109.46755 * 185.52471 * 9 7 2 11 11 O 1.21272 * 120.00157 * 6.26817 * 10 9 7 12 12 N 1.34781 * 119.99428 * 186.27423 * 10 9 7 13 13 C 1.46502 * 119.99418 * 179.97438 * 12 10 9 14 14 C 1.50694 * 109.47111 * 269.99646 * 13 12 10 15 15 H 1.07999 * 120.00155 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00300 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00508 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99774 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47100 * 90.00284 * 18 16 14 20 20 H 1.48499 * 109.47265 * 210.00224 * 18 16 14 21 21 H 1.48503 * 109.47153 * 330.00010 * 18 16 14 22 22 C 1.46496 * 120.00376 * 359.97438 * 12 10 9 23 23 C 1.53003 * 109.47046 * 270.00351 * 22 12 10 24 24 C 1.47202 * 109.47017 * 179.97438 * 23 22 12 25 25 N 7.01923 * 61.70225 * 222.48461 * 2 1 3 26 26 H 1.09011 * 109.46816 * 264.91086 * 1 2 3 27 27 H 1.08997 * 109.47541 * 24.90939 * 1 2 3 28 28 H 1.08999 * 109.46988 * 144.91522 * 1 2 3 29 29 H 1.08999 * 110.48686 * 134.92716 * 5 3 2 30 30 H 1.08999 * 110.48679 * 257.44516 * 5 3 2 31 31 H 1.08998 * 110.97387 * 217.08619 * 6 5 3 32 32 H 1.09006 * 110.97483 * 93.31741 * 6 5 3 33 33 H 1.08996 * 109.47211 * 65.52587 * 9 7 2 34 34 H 1.09000 * 109.47009 * 305.52059 * 9 7 2 35 35 H 1.09001 * 109.47053 * 29.99983 * 13 12 10 36 36 H 1.09002 * 109.47108 * 149.99439 * 13 12 10 37 37 H 0.96997 * 120.00573 * 179.97438 * 17 16 14 38 38 H 1.08994 * 109.47122 * 150.00718 * 22 12 10 39 39 H 1.08999 * 109.46799 * 29.99751 * 22 12 10 40 40 H 1.09004 * 109.47355 * 60.00037 * 23 22 12 41 41 H 1.09003 * 109.47448 * 299.99774 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1097 0.0000 4 8 1.7946 2.2442 0.0078 5 6 3.6898 0.7379 -0.0106 6 6 3.7009 -0.7485 -0.4365 7 6 2.2931 -1.2117 -0.0005 8 1 2.3297 -1.6440 0.9993 9 6 1.7388 -2.2313 -0.9976 10 6 2.5179 -3.5166 -0.8871 11 8 3.3498 -3.6483 -0.0146 12 7 2.2901 -4.5196 -1.7581 13 6 3.0479 -5.7688 -1.6511 14 6 4.3009 -5.6691 -2.4823 15 1 4.5116 -4.7657 -3.0354 16 6 5.1780 -6.7314 -2.5376 17 7 6.2713 -6.6446 -3.2634 18 14 4.8134 -8.2943 -1.5816 19 1 4.0250 -9.2221 -2.4318 20 1 6.0898 -8.9448 -1.1908 21 1 4.0354 -7.9585 -0.3620 22 6 1.2849 -4.3606 -2.8119 23 6 -0.0735 -4.8414 -2.2975 24 6 -1.0837 -4.6811 -3.3562 25 7 -1.8625 -4.5578 -4.1742 26 1 -0.3633 -0.0912 1.0237 27 1 -0.3634 0.9320 -0.4328 28 1 -0.3633 -0.8409 -0.5907 29 1 4.2324 1.3461 -0.7343 30 1 4.1203 0.8551 0.9839 31 1 4.4754 -1.3010 0.0955 32 1 3.8264 -0.8445 -1.5151 33 1 1.8303 -1.8368 -2.0095 34 1 0.6889 -2.4226 -0.7757 35 1 3.3160 -5.9430 -0.6090 36 1 2.4372 -6.5963 -2.0122 37 1 6.8885 -7.3919 -3.3020 38 1 1.5737 -4.9508 -3.6815 39 1 1.2158 -3.3096 -3.0925 40 1 -0.3624 -4.2512 -1.4278 41 1 -0.0046 -5.8924 -2.0168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596894622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:50 Heat of formation + Delta-G solvation = -62.029692 kcal Electronic energy + Delta-G solvation = -23739.834358 eV Core-core repulsion = 20233.136766 eV Total energy + Delta-G solvation = -3506.697592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.69258 -40.52828 -38.05010 -37.63908 -36.62858 -34.77488 -33.66539 -32.52323 -31.96194 -29.62826 -27.49282 -26.37815 -25.18070 -24.06327 -22.42955 -20.34669 -19.78832 -19.13240 -18.53143 -18.14599 -17.55498 -17.35146 -16.79378 -16.24386 -16.13897 -15.81369 -15.62871 -14.95801 -14.85091 -14.72190 -14.46049 -14.41049 -13.89325 -13.76651 -13.60374 -13.52064 -13.41895 -13.24121 -13.04185 -12.97158 -12.73093 -12.64109 -12.31771 -12.01404 -11.93668 -11.86904 -11.69274 -11.64539 -10.90067 -10.71701 -10.55907 -9.72434 -9.39518 -8.23177 -6.27176 1.41708 1.46296 1.52693 1.55121 1.72600 1.85402 1.89175 2.01956 2.39914 2.41111 3.12002 3.18527 3.39422 3.53096 3.75909 3.86517 4.05350 4.07900 4.15798 4.28626 4.39818 4.48520 4.54102 4.60709 4.72865 4.85498 4.87583 4.88537 4.93491 4.95385 5.09857 5.15863 5.16530 5.22120 5.55236 5.58235 5.68403 6.06726 6.33699 6.65722 6.74315 6.77829 7.13309 7.33308 7.50597 8.93581 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012954 B = 0.004909 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.943573 B = 5702.692476 C = 7322.004771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.612 5.612 3 C 0.511 3.489 4 O -0.583 6.583 5 C -0.149 4.149 6 C -0.123 4.123 7 C 0.151 3.849 8 H 0.092 0.908 9 C -0.143 4.143 10 C 0.512 3.488 11 O -0.574 6.574 12 N -0.594 5.594 13 C 0.222 3.778 14 C -0.529 4.529 15 H 0.032 0.968 16 C 0.009 3.991 17 N -0.951 5.951 18 Si 0.941 3.059 19 H -0.257 1.257 20 H -0.293 1.293 21 H -0.243 1.243 22 C 0.110 3.890 23 C -0.038 4.038 24 C 0.244 3.756 25 N -0.494 5.494 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.136 0.864 35 H 0.031 0.969 36 H 0.055 0.945 37 H 0.264 0.736 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.143 0.857 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.177 6.888 7.253 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.344 5.344 3 C 0.300 3.700 4 O -0.464 6.464 5 C -0.189 4.189 6 C -0.161 4.161 7 C 0.047 3.953 8 H 0.110 0.890 9 C -0.183 4.183 10 C 0.301 3.699 11 O -0.454 6.454 12 N -0.324 5.324 13 C 0.100 3.900 14 C -0.568 4.568 15 H 0.050 0.950 16 C -0.188 4.188 17 N -0.591 5.591 18 Si 0.765 3.235 19 H -0.182 1.182 20 H -0.220 1.220 21 H -0.166 1.166 22 C -0.015 4.015 23 C -0.079 4.079 24 C -0.073 4.073 25 N -0.173 5.173 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.154 0.846 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.121 0.879 40 H 0.161 0.839 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.094 7.469 6.439 17.201 hybrid contribution 0.960 -0.852 0.182 1.296 sum -13.134 6.618 6.621 16.128 Atomic orbital electron populations 1.21832 0.76833 1.04065 1.03165 1.48337 1.07403 1.06649 1.72056 1.21297 0.90650 0.83871 0.74192 1.90682 1.79771 1.22734 1.53176 1.22374 0.93094 0.97674 1.05754 1.22626 0.96660 0.94296 1.02544 1.21389 0.89711 0.84045 1.00145 0.89029 1.22059 1.02386 0.91545 1.02284 1.20807 0.82940 0.85331 0.80833 1.90685 1.36109 1.81879 1.36680 1.47814 1.37999 1.15989 1.30641 1.19396 0.90438 0.83426 0.96775 1.21627 1.06162 1.00690 1.28276 0.94994 1.25818 0.94454 1.02543 0.96020 1.70060 1.13175 1.33392 1.42509 0.85806 0.78164 0.79184 0.80375 1.18191 1.21983 1.16617 1.21540 0.85513 1.03960 0.90460 1.19896 0.87693 1.07373 0.92903 1.29275 0.93205 0.91382 0.93447 1.81291 1.12861 1.11043 1.12059 0.91408 0.91528 0.87991 0.87343 0.86557 0.89339 0.90320 0.87052 0.84606 0.95138 0.92737 0.92682 0.90107 0.87876 0.83920 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.73 127.77 1.37 2.49 16 2 N -0.61 -11.77 3.18 -818.88 -2.61 -14.38 16 3 C 0.51 12.58 8.02 87.90 0.71 13.29 16 4 O -0.58 -18.89 17.53 -3.06 -0.05 -18.95 16 5 C -0.15 -2.98 6.86 30.59 0.21 -2.77 16 6 C -0.12 -2.68 5.93 31.65 0.19 -2.49 16 7 C 0.15 2.92 2.93 45.45 0.13 3.05 16 8 H 0.09 1.91 7.80 -2.39 -0.02 1.89 16 9 C -0.14 -2.42 3.67 29.85 0.11 -2.31 16 10 C 0.51 14.38 7.42 87.66 0.65 15.03 16 11 O -0.57 -21.57 14.73 -3.00 -0.04 -21.61 16 12 N -0.59 -17.07 2.46 -826.16 -2.03 -19.10 16 13 C 0.22 8.63 4.23 85.63 0.36 8.99 16 14 C -0.53 -27.29 9.94 25.60 0.25 -27.04 16 15 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 16 C 0.01 0.49 5.47 84.65 0.46 0.95 16 17 N -0.95 -56.85 13.96 21.45 0.30 -56.55 16 18 Si 0.94 40.20 27.47 68.60 1.88 42.09 16 19 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 20 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.24 -9.50 6.54 99.48 0.65 -8.84 16 22 C 0.11 2.10 5.19 86.38 0.45 2.55 16 23 C -0.04 -0.44 6.03 28.79 0.17 -0.27 16 24 C 0.24 4.25 15.43 89.44 1.38 5.63 16 25 N -0.49 -12.19 18.54 20.01 0.37 -11.82 16 26 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.07 1.09 7.82 -2.39 -0.02 1.07 16 28 H 0.10 0.76 6.37 -2.39 -0.02 0.74 16 29 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.12 2.02 8.14 -2.39 -0.02 2.01 16 31 H 0.09 2.21 7.87 -2.39 -0.02 2.19 16 32 H 0.08 1.75 7.80 -2.38 -0.02 1.74 16 33 H 0.11 1.67 6.90 -2.39 -0.02 1.66 16 34 H 0.14 1.20 5.92 -2.39 -0.01 1.19 16 35 H 0.03 1.30 6.48 -2.39 -0.02 1.28 16 36 H 0.05 1.85 7.50 -2.39 -0.02 1.84 16 37 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 38 H 0.08 1.85 8.07 -2.39 -0.02 1.84 16 39 H 0.10 1.50 6.27 -2.39 -0.01 1.48 16 40 H 0.14 0.74 7.42 -2.38 -0.02 0.72 16 41 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -79.31 345.64 5.26 -74.05 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.99 Total: 9.16 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 6.45 Total: 17.11 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -3.97 Total: -101.85 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.10 Total: -40.56 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.88 Total: 42.09 kcal Total: -79.31 5.26 -74.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596894622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.022 kcal (2) G-P(sol) polarization free energy of solvation -79.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds