Wall clock time and date at job start Tue Mar 31 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34425 * 124.34943 * 2 1 4 4 O 1.21283 * 124.93992 * 359.53316 * 3 2 1 5 5 C 1.51278 * 110.11430 * 179.57368 * 3 2 1 6 6 C 1.54626 * 104.19822 * 343.74319 * 5 3 2 7 7 C 1.46758 * 124.35184 * 179.97438 * 2 1 3 8 8 H 1.09000 * 110.32340 * 77.99749 * 7 2 1 9 9 C 1.53001 * 110.24769 * 316.03526 * 7 2 1 10 10 C 1.50697 * 109.47281 * 178.11966 * 9 7 2 11 11 O 1.21275 * 120.00200 * 354.24733 * 10 9 7 12 12 N 1.34785 * 120.00010 * 174.24523 * 10 9 7 13 13 C 1.46496 * 120.00201 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47043 * 270.00041 * 13 12 10 15 15 H 1.08005 * 119.99633 * 359.97438 * 14 13 12 16 16 C 1.37868 * 119.99954 * 179.97438 * 14 13 12 17 17 N 1.31523 * 120.00143 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99956 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46895 * 59.99948 * 18 16 14 20 20 H 1.48508 * 109.46904 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46998 * 299.99810 * 18 16 14 22 22 C 1.46503 * 119.99518 * 359.97438 * 12 10 9 23 23 C 1.52993 * 109.47267 * 270.00090 * 22 12 10 24 24 C 1.47207 * 109.47092 * 180.02562 * 23 22 12 25 25 N 6.98471 * 77.56462 * 120.53611 * 2 1 3 26 26 H 1.09009 * 109.46925 * 274.97742 * 1 2 3 27 27 H 1.09001 * 109.47493 * 34.97434 * 1 2 3 28 28 H 1.09002 * 109.47109 * 154.98449 * 1 2 3 29 29 H 1.09004 * 110.48229 * 225.06395 * 5 3 2 30 30 H 1.08999 * 110.48979 * 102.42622 * 5 3 2 31 31 H 1.08999 * 110.97150 * 266.68306 * 6 5 3 32 32 H 1.09003 * 110.96838 * 142.91724 * 6 5 3 33 33 H 1.09006 * 109.46943 * 58.12272 * 9 7 2 34 34 H 1.08998 * 109.47412 * 298.12175 * 9 7 2 35 35 H 1.09006 * 109.47203 * 29.99528 * 13 12 10 36 36 H 1.08995 * 109.47385 * 149.99350 * 13 12 10 37 37 H 0.97001 * 120.00087 * 180.02562 * 17 16 14 38 38 H 1.09011 * 109.46476 * 149.99957 * 22 12 10 39 39 H 1.09001 * 109.47394 * 30.00920 * 22 12 10 40 40 H 1.09006 * 109.47511 * 300.00232 * 23 22 12 41 41 H 1.08998 * 109.47177 * 60.00416 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2443 -0.0081 5 6 3.6897 0.7379 0.0106 6 6 3.7009 -0.7485 0.4365 7 6 2.2931 -1.2116 0.0005 8 1 2.3312 -1.6446 -0.9991 9 6 1.7389 -2.2313 0.9975 10 6 2.5740 -3.4849 0.9506 11 8 3.4534 -3.5970 0.1230 12 7 2.3435 -4.4814 1.8283 13 6 3.1557 -5.6998 1.7831 14 6 2.5081 -6.7013 0.8617 15 1 1.5837 -6.4549 0.3604 16 6 3.0956 -7.9319 0.6588 17 7 4.2215 -8.2317 1.2689 18 14 2.2925 -9.1735 -0.4827 19 1 2.1882 -8.5964 -1.8470 20 1 3.1159 -10.4086 -0.5286 21 1 0.9348 -9.5028 0.0207 22 6 1.2815 -4.3457 2.8283 23 6 1.8529 -3.7065 4.0955 24 6 0.7859 -3.5707 5.1005 25 7 -0.0391 -3.4655 5.8749 26 1 -0.3633 0.0892 1.0239 27 1 -0.3634 0.8421 -0.5891 28 1 -0.3633 -0.9313 -0.4346 29 1 4.2324 1.3462 0.7342 30 1 4.1197 0.8528 -0.9844 31 1 3.8264 -0.8443 1.5150 32 1 4.4754 -1.3010 -0.0955 33 1 0.7081 -2.4715 0.7365 34 1 1.7706 -1.8110 2.0027 35 1 4.1526 -5.4585 1.4142 36 1 3.2315 -6.1233 2.7845 37 1 4.6351 -9.0974 1.1259 38 1 0.8796 -5.3304 3.0674 39 1 0.4861 -3.7155 2.4304 40 1 2.6483 -4.3367 4.4935 41 1 2.2547 -2.7219 3.8564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596894623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:54 Heat of formation + Delta-G solvation = -44.503912 kcal Electronic energy + Delta-G solvation = -23697.171262 eV Core-core repulsion = 20191.233645 eV Total energy + Delta-G solvation = -3505.937617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.70067 -39.25958 -37.01619 -36.57575 -35.31746 -33.01544 -32.83611 -31.10614 -30.89108 -27.51029 -26.72850 -25.22884 -24.08813 -22.85815 -21.45863 -19.44429 -18.62978 -17.67234 -17.19020 -16.62762 -16.44328 -16.23911 -15.47612 -15.13810 -14.98909 -14.74600 -14.27717 -13.99335 -13.84480 -13.70835 -13.22645 -13.03349 -12.84637 -12.52715 -12.47817 -12.38702 -12.31749 -12.20255 -11.92052 -11.65207 -11.33274 -11.14785 -11.05903 -11.03796 -10.86416 -10.66122 -10.26016 -9.88775 -9.79446 -9.19541 -8.79828 -8.53162 -7.95388 -6.15217 -4.20295 2.50547 2.66221 2.75421 2.86213 3.15535 3.25566 3.30918 3.33483 3.56932 4.08517 4.28640 4.36009 4.44330 4.62535 4.88019 4.92336 4.99814 5.05029 5.10054 5.15349 5.20555 5.24613 5.30378 5.40576 5.47517 5.61096 5.65849 5.69394 5.75236 5.98481 6.00238 6.09608 6.38787 6.83702 7.00029 7.26558 7.33283 7.51783 7.80076 8.08338 8.09620 8.14438 8.72636 8.87721 9.45635 10.92808 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013252 B = 0.004552 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.414955 B = 6150.134634 C = 7400.040182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.619 5.619 3 C 0.517 3.483 4 O -0.542 6.542 5 C -0.156 4.156 6 C -0.121 4.121 7 C 0.147 3.853 8 H 0.094 0.906 9 C -0.154 4.154 10 C 0.512 3.488 11 O -0.529 6.529 12 N -0.595 5.595 13 C 0.245 3.755 14 C -0.531 4.531 15 H 0.057 0.943 16 C 0.064 3.936 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.117 3.883 23 C -0.050 4.050 24 C 0.216 3.784 25 N -0.444 5.444 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.035 0.965 37 H 0.265 0.735 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 12.442 0.762 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.353 5.353 3 C 0.305 3.695 4 O -0.419 6.419 5 C -0.196 4.196 6 C -0.158 4.158 7 C 0.043 3.957 8 H 0.112 0.888 9 C -0.195 4.195 10 C 0.298 3.702 11 O -0.406 6.406 12 N -0.327 5.327 13 C 0.127 3.873 14 C -0.570 4.570 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.009 4.009 23 C -0.092 4.092 24 C -0.103 4.103 25 N -0.121 5.121 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.136 0.864 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.062 12.955 1.486 13.658 hybrid contribution -0.277 -1.017 -0.793 1.319 sum -4.339 11.938 0.693 12.721 Atomic orbital electron populations 1.21542 0.78358 1.03013 1.01939 1.48309 1.06441 1.07385 1.73204 1.20965 0.89620 0.84089 0.74836 1.90704 1.79013 1.21220 1.50989 1.22386 0.94224 0.98267 1.04765 1.22668 0.96633 0.93889 1.02654 1.21483 0.89940 0.84022 1.00241 0.88777 1.22096 1.01225 0.94943 1.01224 1.20038 0.84511 0.83938 0.81694 1.90696 1.33072 1.80563 1.36234 1.48215 1.34841 1.18814 1.30802 1.19359 0.91359 0.79084 0.97548 1.21357 1.08974 0.98995 1.27629 0.92461 1.24902 0.94844 0.98187 0.95918 1.69904 1.17715 1.22785 1.42751 0.86590 0.79195 0.80426 0.81400 1.20171 1.21175 1.20264 1.21310 0.90272 1.02566 0.86784 1.19897 0.93194 1.04631 0.91449 1.29115 0.94234 0.92903 0.94006 1.81234 1.10831 1.09234 1.10810 0.92527 0.91037 0.90666 0.88163 0.87798 0.90189 0.87808 0.88710 0.88978 0.93434 0.94739 0.92559 0.88694 0.90685 0.86420 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 10.07 59.84 0.60 1.45 16 2 N -0.62 -6.78 3.18 -172.70 -0.55 -7.33 16 3 C 0.52 6.53 8.02 -10.86 -0.09 6.44 16 4 O -0.54 -8.81 17.66 5.55 0.10 -8.71 16 5 C -0.16 -1.51 6.86 -26.74 -0.18 -1.69 16 6 C -0.12 -1.22 5.75 -25.10 -0.14 -1.36 16 7 C 0.15 1.60 2.95 -67.01 -0.20 1.40 16 8 H 0.09 1.14 7.93 -51.93 -0.41 0.73 16 9 C -0.15 -1.64 3.45 -27.88 -0.10 -1.74 16 10 C 0.51 8.01 7.38 -10.98 -0.08 7.93 16 11 O -0.53 -10.43 14.51 5.56 0.08 -10.35 16 12 N -0.60 -9.68 2.46 -175.06 -0.43 -10.11 16 13 C 0.25 5.39 5.16 -5.19 -0.03 5.36 16 14 C -0.53 -13.42 9.39 -34.44 -0.32 -13.74 16 15 H 0.06 1.45 7.81 -52.48 -0.41 1.04 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -24.55 13.29 55.43 0.74 -23.81 16 18 Si 0.90 20.46 29.54 -169.99 -5.02 15.43 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 C 0.12 1.38 5.09 -4.04 -0.02 1.36 16 23 C -0.05 -0.47 5.97 -29.52 -0.18 -0.64 16 24 C 0.22 2.43 15.43 -20.74 -0.32 2.11 16 25 N -0.44 -6.27 18.54 42.17 0.78 -5.49 16 26 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 27 H 0.07 0.68 8.03 -51.93 -0.42 0.27 16 28 H 0.07 0.56 7.64 -51.93 -0.40 0.16 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.75 7.86 -51.93 -0.41 0.34 16 32 H 0.10 1.15 7.69 -51.93 -0.40 0.75 16 33 H 0.09 0.90 6.83 -51.93 -0.35 0.54 16 34 H 0.09 0.79 6.81 -51.93 -0.35 0.44 16 35 H 0.05 1.20 7.42 -51.93 -0.39 0.81 16 36 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.09 1.23 8.07 -51.92 -0.42 0.82 16 39 H 0.07 0.72 6.60 -51.93 -0.34 0.37 16 40 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.11 0.76 7.13 -51.93 -0.37 0.39 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -33.12 350.27 -6.09 -39.21 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.91 Total: -2.59 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -1.15 Total: 8.46 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.54 Total: -46.73 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.18 Total: -19.06 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.12 -6.09 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596894623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.293 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds