Wall clock time and date at job start Tue Mar 31 2020 03:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34425 * 124.34943 * 2 1 4 4 O 1.21283 * 124.93992 * 359.53316 * 3 2 1 5 5 C 1.51278 * 110.11430 * 179.57368 * 3 2 1 6 6 C 1.54626 * 104.19822 * 343.74319 * 5 3 2 7 7 C 1.46758 * 124.35184 * 179.97438 * 2 1 3 8 8 H 1.09000 * 110.32340 * 77.99749 * 7 2 1 9 9 C 1.53001 * 110.24769 * 316.03526 * 7 2 1 10 10 C 1.50697 * 109.47281 * 178.11966 * 9 7 2 11 11 O 1.21275 * 120.00200 * 354.24733 * 10 9 7 12 12 N 1.34785 * 120.00010 * 174.24523 * 10 9 7 13 13 C 1.46496 * 120.00201 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47043 * 270.00041 * 13 12 10 15 15 H 1.08005 * 119.99633 * 359.97438 * 14 13 12 16 16 C 1.37868 * 119.99954 * 179.97438 * 14 13 12 17 17 N 1.31523 * 120.00143 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99956 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46895 * 59.99948 * 18 16 14 20 20 H 1.48508 * 109.46904 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46998 * 299.99810 * 18 16 14 22 22 C 1.46503 * 119.99518 * 359.97438 * 12 10 9 23 23 C 1.52993 * 109.47267 * 270.00090 * 22 12 10 24 24 C 1.47207 * 109.47092 * 180.02562 * 23 22 12 25 25 N 6.98471 * 77.56462 * 120.53611 * 2 1 3 26 26 H 1.09009 * 109.46925 * 274.97742 * 1 2 3 27 27 H 1.09001 * 109.47493 * 34.97434 * 1 2 3 28 28 H 1.09002 * 109.47109 * 154.98449 * 1 2 3 29 29 H 1.09004 * 110.48229 * 225.06395 * 5 3 2 30 30 H 1.08999 * 110.48979 * 102.42622 * 5 3 2 31 31 H 1.08999 * 110.97150 * 266.68306 * 6 5 3 32 32 H 1.09003 * 110.96838 * 142.91724 * 6 5 3 33 33 H 1.09006 * 109.46943 * 58.12272 * 9 7 2 34 34 H 1.08998 * 109.47412 * 298.12175 * 9 7 2 35 35 H 1.09006 * 109.47203 * 29.99528 * 13 12 10 36 36 H 1.08995 * 109.47385 * 149.99350 * 13 12 10 37 37 H 0.97001 * 120.00087 * 180.02562 * 17 16 14 38 38 H 1.09011 * 109.46476 * 149.99957 * 22 12 10 39 39 H 1.09001 * 109.47394 * 30.00920 * 22 12 10 40 40 H 1.09006 * 109.47511 * 300.00232 * 23 22 12 41 41 H 1.08998 * 109.47177 * 60.00416 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 8 1.7946 2.2443 -0.0081 5 6 3.6897 0.7379 0.0106 6 6 3.7009 -0.7485 0.4365 7 6 2.2931 -1.2116 0.0005 8 1 2.3312 -1.6446 -0.9991 9 6 1.7389 -2.2313 0.9975 10 6 2.5740 -3.4849 0.9506 11 8 3.4534 -3.5970 0.1230 12 7 2.3435 -4.4814 1.8283 13 6 3.1557 -5.6998 1.7831 14 6 2.5081 -6.7013 0.8617 15 1 1.5837 -6.4549 0.3604 16 6 3.0956 -7.9319 0.6588 17 7 4.2215 -8.2317 1.2689 18 14 2.2925 -9.1735 -0.4827 19 1 2.1882 -8.5964 -1.8470 20 1 3.1159 -10.4086 -0.5286 21 1 0.9348 -9.5028 0.0207 22 6 1.2815 -4.3457 2.8283 23 6 1.8529 -3.7065 4.0955 24 6 0.7859 -3.5707 5.1005 25 7 -0.0391 -3.4655 5.8749 26 1 -0.3633 0.0892 1.0239 27 1 -0.3634 0.8421 -0.5891 28 1 -0.3633 -0.9313 -0.4346 29 1 4.2324 1.3462 0.7342 30 1 4.1197 0.8528 -0.9844 31 1 3.8264 -0.8443 1.5150 32 1 4.4754 -1.3010 -0.0955 33 1 0.7081 -2.4715 0.7365 34 1 1.7706 -1.8110 2.0027 35 1 4.1526 -5.4585 1.4142 36 1 3.2315 -6.1233 2.7845 37 1 4.6351 -9.0974 1.1259 38 1 0.8796 -5.3304 3.0674 39 1 0.4861 -3.7155 2.4304 40 1 2.6483 -4.3367 4.4935 41 1 2.2547 -2.7219 3.8564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596894623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:52 Heat of formation + Delta-G solvation = -65.693581 kcal Electronic energy + Delta-G solvation = -23698.090115 eV Core-core repulsion = 20191.233645 eV Total energy + Delta-G solvation = -3506.856470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.66078 -40.46907 -38.03558 -37.61359 -36.58567 -34.83098 -33.63638 -32.30148 -31.92186 -29.12162 -27.48661 -26.36611 -25.25715 -24.28131 -22.44873 -20.33993 -19.81930 -18.74702 -18.29365 -18.17920 -17.51928 -17.31876 -16.81370 -16.23554 -16.06672 -15.94440 -15.59366 -14.89953 -14.74971 -14.71752 -14.40065 -14.14987 -14.01602 -13.71360 -13.55725 -13.48909 -13.25660 -13.18957 -13.02193 -12.87565 -12.75947 -12.58451 -12.43800 -12.13441 -11.97052 -11.87305 -11.71334 -11.62250 -10.88209 -10.53540 -10.48279 -9.71669 -9.40119 -8.13509 -6.25027 1.43708 1.45792 1.52132 1.55613 1.71590 1.86770 1.93625 2.00319 2.39062 2.51627 3.15209 3.19753 3.42738 3.59450 3.77919 3.91110 4.10695 4.12579 4.17640 4.30977 4.40736 4.47676 4.56035 4.64609 4.69747 4.88755 4.89539 4.91827 4.92624 5.10844 5.18101 5.20855 5.27314 5.41753 5.56150 5.66652 5.93257 6.10538 6.18463 6.63702 6.80262 6.88399 7.15398 7.39903 7.58248 8.92604 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013252 B = 0.004552 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.414955 B = 6150.134634 C = 7400.040182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.613 5.613 3 C 0.509 3.491 4 O -0.584 6.584 5 C -0.148 4.148 6 C -0.117 4.117 7 C 0.148 3.852 8 H 0.080 0.920 9 C -0.140 4.140 10 C 0.510 3.490 11 O -0.576 6.576 12 N -0.597 5.597 13 C 0.260 3.740 14 C -0.538 4.538 15 H 0.054 0.946 16 C 0.013 3.987 17 N -0.926 5.926 18 Si 0.952 3.048 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.266 1.266 22 C 0.113 3.887 23 C -0.039 4.039 24 C 0.245 3.755 25 N -0.492 5.492 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.009 0.991 36 H 0.031 0.969 37 H 0.264 0.736 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.330 13.109 1.083 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.346 5.346 3 C 0.299 3.701 4 O -0.465 6.465 5 C -0.188 4.188 6 C -0.155 4.155 7 C 0.044 3.956 8 H 0.098 0.902 9 C -0.180 4.180 10 C 0.299 3.701 11 O -0.456 6.456 12 N -0.328 5.328 13 C 0.139 3.861 14 C -0.577 4.577 15 H 0.073 0.927 16 C -0.186 4.186 17 N -0.566 5.566 18 Si 0.778 3.222 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.011 4.011 23 C -0.080 4.080 24 C -0.072 4.072 25 N -0.170 5.170 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.027 0.973 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.138 0.862 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.300 13.617 1.828 14.726 hybrid contribution 0.097 -1.231 -0.928 1.545 sum -5.203 12.386 0.901 13.464 Atomic orbital electron populations 1.21747 0.77217 1.03714 1.02914 1.48367 1.07226 1.06844 1.72120 1.21399 0.90853 0.83720 0.74143 1.90683 1.79882 1.22789 1.53140 1.22390 0.92610 0.98021 1.05786 1.22636 0.95812 0.93804 1.03279 1.21403 0.90463 0.83981 0.99724 0.90244 1.22036 1.00956 0.92008 1.03001 1.20823 0.84121 0.84861 0.80334 1.90686 1.35249 1.81612 1.38008 1.48059 1.35273 1.17265 1.32205 1.18787 0.90270 0.80786 0.96254 1.21745 1.08701 0.99652 1.27556 0.92731 1.25660 0.95395 1.00175 0.97376 1.70010 1.19040 1.23194 1.44328 0.85696 0.78796 0.78283 0.79388 1.20411 1.21112 1.19043 1.21504 0.89733 1.03020 0.86882 1.19875 0.92306 1.06212 0.89601 1.29244 0.93427 0.91309 0.93252 1.81281 1.12324 1.11087 1.12345 0.91099 0.91914 0.88777 0.86723 0.86916 0.88886 0.89094 0.86477 0.85766 0.97282 0.95055 0.92700 0.90060 0.87441 0.86173 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 10.07 127.77 1.29 2.60 16 2 N -0.61 -11.92 3.18 -818.89 -2.61 -14.53 16 3 C 0.51 12.03 8.02 87.90 0.71 12.73 16 4 O -0.58 -18.50 17.66 -3.04 -0.05 -18.56 16 5 C -0.15 -2.58 6.86 30.59 0.21 -2.38 16 6 C -0.12 -2.14 5.75 31.65 0.18 -1.96 16 7 C 0.15 2.87 2.95 45.45 0.13 3.01 16 8 H 0.08 1.82 7.93 -2.39 -0.02 1.80 16 9 C -0.14 -2.47 3.45 29.85 0.10 -2.37 16 10 C 0.51 15.00 7.38 87.65 0.65 15.65 16 11 O -0.58 -22.60 14.51 -3.01 -0.04 -22.64 16 12 N -0.60 -18.43 2.46 -826.15 -2.03 -20.45 16 13 C 0.26 11.49 5.16 85.64 0.44 11.93 16 14 C -0.54 -27.20 9.39 25.60 0.24 -26.96 16 15 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 16 C 0.01 0.69 5.46 84.65 0.46 1.16 16 17 N -0.93 -51.63 13.29 21.45 0.28 -51.34 16 18 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 C 0.11 2.33 5.09 86.38 0.44 2.77 16 23 C -0.04 -0.59 5.97 28.79 0.17 -0.41 16 24 C 0.24 4.83 15.43 89.44 1.38 6.21 16 25 N -0.49 -12.95 18.54 20.01 0.37 -12.58 16 26 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.06 1.10 8.03 -2.39 -0.02 1.08 16 28 H 0.09 1.08 7.64 -2.39 -0.02 1.06 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 1.45 7.86 -2.39 -0.02 1.43 16 32 H 0.09 1.95 7.69 -2.39 -0.02 1.93 16 33 H 0.12 1.64 6.83 -2.38 -0.02 1.63 16 34 H 0.12 1.46 6.81 -2.39 -0.02 1.45 16 35 H 0.01 0.47 7.42 -2.38 -0.02 0.45 16 36 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 37 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 38 H 0.08 1.94 8.07 -2.38 -0.02 1.93 16 39 H 0.11 1.55 6.60 -2.39 -0.02 1.54 16 40 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.14 1.29 7.13 -2.39 -0.02 1.27 16 Total: -1.00 -74.10 350.27 5.39 -68.72 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.04 Total: 5.53 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 6.40 Total: 21.99 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -3.98 Total: -98.90 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -0.10 Total: -41.20 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -74.10 5.39 -68.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596894623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.021 kcal (2) G-P(sol) polarization free energy of solvation -74.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds