Wall clock time and date at job start Tue Mar 31 2020 03:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47229 * 2 1 4 4 C 1.52994 * 109.47145 * 239.99784 * 2 1 3 5 5 N 1.46495 * 109.46916 * 119.99662 * 2 1 3 6 6 N 1.28786 * 125.45337 * 359.97438 * 5 2 1 7 7 N 1.28991 * 108.72946 * 180.02562 * 6 5 2 8 8 C 1.33313 * 107.35565 * 359.97438 * 7 6 5 9 9 C 1.50699 * 126.55024 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46849 * 90.02633 * 9 8 7 11 11 O 1.21287 * 119.99937 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99981 * 179.97438 * 10 9 8 13 13 C 1.37099 * 120.00025 * 180.27795 * 12 10 9 14 14 H 1.08000 * 120.00132 * 139.24877 * 13 12 10 15 15 C 1.38950 * 119.99621 * 319.24606 * 13 12 10 16 16 N 1.31405 * 119.99937 * 164.46123 * 15 13 12 17 17 Si 1.86798 * 120.00249 * 344.45551 * 15 13 12 18 18 H 1.48497 * 109.47272 * 94.56574 * 17 15 13 19 19 H 1.48502 * 109.47258 * 214.56900 * 17 15 13 20 20 H 1.48500 * 109.47133 * 334.56833 * 17 15 13 21 21 C 1.46499 * 119.99926 * 0.02562 * 12 10 9 22 22 C 1.53006 * 117.49867 * 181.88182 * 21 12 10 23 23 C 1.52997 * 117.49903 * 113.22194 * 21 12 10 24 24 N 1.28887 * 125.45016 * 180.30857 * 5 2 1 25 25 H 1.09003 * 109.47143 * 300.00237 * 1 2 3 26 26 H 1.09010 * 109.47234 * 59.99891 * 1 2 3 27 27 H 1.08994 * 109.47433 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47530 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47513 * 300.00168 * 3 2 1 30 30 H 1.09003 * 109.47251 * 59.99829 * 3 2 1 31 31 H 1.09000 * 109.47206 * 299.99916 * 4 2 1 32 32 H 1.08999 * 109.47062 * 60.00453 * 4 2 1 33 33 H 1.09004 * 109.47179 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.47447 * 330.02878 * 9 8 7 35 35 H 1.09000 * 109.47064 * 210.02371 * 9 8 7 36 36 H 0.96996 * 120.00465 * 180.02562 * 16 15 13 37 37 H 1.09000 * 115.55250 * 327.54908 * 21 12 10 38 38 H 1.08996 * 117.49552 * 359.97438 * 22 21 12 39 39 H 1.08997 * 117.49690 * 145.02082 * 22 21 12 40 40 H 1.09004 * 117.49975 * 214.97654 * 23 21 12 41 41 H 1.09001 * 117.50235 * 359.97239 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6905 1.1962 6 7 1.2781 -1.2170 2.1092 7 7 2.0398 -1.7372 3.0110 8 6 3.3016 -1.5227 2.6378 9 6 4.5418 -1.9501 3.3794 10 6 4.9552 -3.3236 2.9171 11 8 4.3068 -3.8986 2.0686 12 7 6.0460 -3.9127 3.4458 13 6 6.4254 -5.1598 3.0212 14 1 7.4708 -5.3833 2.8678 15 6 5.4647 -6.1364 2.7882 16 7 5.7754 -7.2132 2.1022 17 14 3.7317 -5.9185 3.4503 18 1 2.8732 -5.3131 2.4007 19 1 3.1802 -7.2415 3.8387 20 1 3.7639 -5.0276 4.6380 21 6 6.8296 -3.2180 4.4704 22 6 8.0816 -3.9206 4.9994 23 6 6.8342 -3.8125 5.8801 24 7 3.2573 -0.8630 1.5063 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 4.3354 -1.9738 4.4494 35 1 5.3464 -1.2422 3.1801 36 1 5.1048 -7.8948 1.9392 37 1 6.8613 -2.1320 4.3820 38 1 8.3220 -4.8998 4.5855 39 1 8.9368 -3.2968 5.2595 40 1 6.8694 -3.1177 6.7192 41 1 6.2539 -4.7203 6.0455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:59 Heat of formation + Delta-G solvation = 134.974815 kcal Electronic energy + Delta-G solvation = -24379.530403 eV Core-core repulsion = 20913.668319 eV Total energy + Delta-G solvation = -3465.862084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.99429 -39.20151 -37.66086 -36.45862 -33.30336 -33.01293 -32.66258 -31.46643 -29.23074 -27.78979 -27.66542 -24.92957 -24.27277 -22.39528 -21.82475 -21.29234 -20.46993 -19.25110 -17.39500 -16.99610 -16.71132 -16.13966 -15.53837 -14.66009 -14.42730 -14.31701 -14.16338 -14.03725 -13.41913 -13.23714 -13.14541 -12.90445 -12.71658 -12.55813 -12.46591 -12.09644 -11.98611 -11.72127 -11.63746 -11.58405 -11.19335 -11.10686 -10.73657 -10.57677 -10.47654 -10.28021 -10.02285 -9.95140 -9.80330 -9.55050 -8.58856 -8.42980 -7.51282 -6.15128 -3.96151 1.58648 2.06407 2.56852 3.27721 3.58051 3.77157 3.86731 3.95701 4.22376 4.31424 4.41837 4.47882 4.53307 4.68812 4.86984 5.12752 5.15981 5.17273 5.26132 5.31574 5.39907 5.42747 5.43801 5.49129 5.57102 5.62625 5.67706 5.70586 5.81068 5.89946 5.95188 6.08003 6.17469 6.20014 6.31271 6.53328 6.67665 6.86026 7.84468 7.93620 8.74308 8.75812 8.87101 9.42772 9.75760 10.87422 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.005086 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.420814 B = 5503.805325 C = 6061.573138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.180 3.820 3 C -0.156 4.156 4 C -0.159 4.159 5 N -0.136 5.136 6 N -0.070 5.070 7 N -0.280 5.280 8 C 0.202 3.798 9 C -0.041 4.041 10 C 0.453 3.547 11 O -0.533 6.533 12 N -0.431 5.431 13 C -0.345 4.345 14 H 0.099 0.901 15 C 0.086 3.914 16 N -0.869 5.869 17 Si 0.929 3.071 18 H -0.256 1.256 19 H -0.318 1.318 20 H -0.283 1.283 21 C 0.059 3.941 22 C -0.170 4.170 23 C -0.198 4.198 24 N -0.298 5.298 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.272 0.728 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.270 17.775 -1.312 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.099 3.901 3 C -0.214 4.214 4 C -0.218 4.218 5 N -0.049 5.049 6 N -0.063 5.063 7 N -0.151 5.151 8 C -0.081 4.081 9 C -0.085 4.085 10 C 0.242 3.758 11 O -0.416 6.416 12 N -0.151 5.151 13 C -0.471 4.471 14 H 0.116 0.884 15 C -0.122 4.122 16 N -0.504 5.504 17 Si 0.763 3.237 18 H -0.183 1.183 19 H -0.249 1.249 20 H -0.209 1.209 21 C -0.047 4.047 22 C -0.208 4.208 23 C -0.236 4.236 24 N -0.147 5.147 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.278 17.407 -1.992 18.612 hybrid contribution -0.236 -0.167 0.469 0.550 sum -6.513 17.240 -1.524 18.493 Atomic orbital electron populations 1.22065 0.90426 1.04600 1.03854 1.21270 0.96191 0.92540 0.80088 1.22203 1.03344 0.92279 1.03609 1.22228 1.03566 1.01235 0.94750 1.50328 1.01364 1.35256 1.17989 1.78812 1.22220 1.09549 0.95695 1.75771 1.01098 1.17883 1.20348 1.24773 0.94876 0.97149 0.91346 1.19947 0.90909 0.97778 0.99827 1.19809 0.84706 0.86482 0.84780 1.90515 1.53231 1.64115 1.33766 1.43062 1.23706 1.16053 1.32298 1.18790 0.95393 0.85564 1.47342 0.88363 1.25364 1.00017 0.93774 0.93081 1.69711 1.36127 1.09788 1.34790 0.86015 0.84265 0.74677 0.78736 1.18270 1.24883 1.20856 1.21859 0.98726 0.94947 0.89126 1.23136 0.90867 1.03630 1.03163 1.23299 1.02540 1.03905 0.93887 1.74531 1.02838 1.21149 1.16224 0.90762 0.89539 0.90614 0.90404 0.89466 0.91599 0.91250 0.89530 0.90276 0.87055 0.87135 0.91828 0.86963 0.87050 0.89355 0.89351 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 7.91 37.16 0.29 -1.06 16 2 C 0.18 2.02 1.30 -131.83 -0.17 1.85 16 3 C -0.16 -1.32 8.66 37.16 0.32 -1.00 16 4 C -0.16 -1.70 8.67 37.15 0.32 -1.38 16 5 N -0.14 -2.24 3.73 0.47 0.00 -2.24 16 6 N -0.07 -1.32 12.24 60.35 0.74 -0.58 16 7 N -0.28 -5.94 12.50 32.45 0.41 -5.54 16 8 C 0.20 4.08 6.86 -156.63 -1.07 3.01 16 9 C -0.04 -0.78 4.96 -29.03 -0.14 -0.92 16 10 C 0.45 11.04 5.80 -10.98 -0.06 10.98 16 11 O -0.53 -15.37 10.80 5.55 0.06 -15.31 16 12 N -0.43 -10.34 2.56 -107.73 -0.28 -10.61 16 13 C -0.35 -9.71 8.75 -14.93 -0.13 -9.84 16 14 H 0.10 2.85 7.02 -52.49 -0.37 2.49 16 15 C 0.09 2.60 4.97 -17.47 -0.09 2.52 16 16 N -0.87 -27.08 13.96 55.50 0.77 -26.30 16 17 Si 0.93 26.37 24.37 -169.99 -4.14 22.23 16 18 H -0.26 -7.83 6.15 56.52 0.35 -7.49 16 19 H -0.32 -8.88 7.11 56.52 0.40 -8.48 16 20 H -0.28 -7.72 7.04 56.52 0.40 -7.33 16 21 C 0.06 1.08 5.84 -67.93 -0.40 0.68 16 22 C -0.17 -2.85 9.80 -26.69 -0.26 -3.11 16 23 C -0.20 -3.29 10.38 -26.69 -0.28 -3.57 16 24 N -0.30 -5.55 11.83 32.46 0.38 -5.17 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.11 1.86 8.11 -51.93 -0.42 1.43 16 35 H 0.11 1.67 7.57 -51.93 -0.39 1.28 16 36 H 0.27 8.06 8.31 -40.82 -0.34 7.72 16 37 H 0.11 1.63 7.00 -51.93 -0.36 1.27 16 38 H 0.11 2.16 6.52 -51.93 -0.34 1.82 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -37.50 338.41 -4.77 -42.27 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.15 Total: -2.02 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.67 Total: -1.83 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 2.03 Total: -50.43 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.06 Total: -15.31 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -4.14 Total: 22.23 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.50 -4.77 -42.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.244 kcal (2) G-P(sol) polarization free energy of solvation -37.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds