Wall clock time and date at job start Tue Mar 31 2020 03:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47229 * 2 1 4 4 C 1.52994 * 109.47145 * 239.99784 * 2 1 3 5 5 N 1.46495 * 109.46916 * 119.99662 * 2 1 3 6 6 N 1.28786 * 125.45337 * 359.97438 * 5 2 1 7 7 N 1.28991 * 108.72946 * 180.02562 * 6 5 2 8 8 C 1.33313 * 107.35565 * 359.97438 * 7 6 5 9 9 C 1.50699 * 126.55024 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46849 * 90.02633 * 9 8 7 11 11 O 1.21287 * 119.99937 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99981 * 179.97438 * 10 9 8 13 13 C 1.37099 * 120.00025 * 180.27795 * 12 10 9 14 14 H 1.08000 * 120.00132 * 139.24877 * 13 12 10 15 15 C 1.38950 * 119.99621 * 319.24606 * 13 12 10 16 16 N 1.31405 * 119.99937 * 164.46123 * 15 13 12 17 17 Si 1.86798 * 120.00249 * 344.45551 * 15 13 12 18 18 H 1.48497 * 109.47272 * 94.56574 * 17 15 13 19 19 H 1.48502 * 109.47258 * 214.56900 * 17 15 13 20 20 H 1.48500 * 109.47133 * 334.56833 * 17 15 13 21 21 C 1.46499 * 119.99926 * 0.02562 * 12 10 9 22 22 C 1.53006 * 117.49867 * 181.88182 * 21 12 10 23 23 C 1.52997 * 117.49903 * 113.22194 * 21 12 10 24 24 N 1.28887 * 125.45016 * 180.30857 * 5 2 1 25 25 H 1.09003 * 109.47143 * 300.00237 * 1 2 3 26 26 H 1.09010 * 109.47234 * 59.99891 * 1 2 3 27 27 H 1.08994 * 109.47433 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47530 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47513 * 300.00168 * 3 2 1 30 30 H 1.09003 * 109.47251 * 59.99829 * 3 2 1 31 31 H 1.09000 * 109.47206 * 299.99916 * 4 2 1 32 32 H 1.08999 * 109.47062 * 60.00453 * 4 2 1 33 33 H 1.09004 * 109.47179 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.47447 * 330.02878 * 9 8 7 35 35 H 1.09000 * 109.47064 * 210.02371 * 9 8 7 36 36 H 0.96996 * 120.00465 * 180.02562 * 16 15 13 37 37 H 1.09000 * 115.55250 * 327.54908 * 21 12 10 38 38 H 1.08996 * 117.49552 * 359.97438 * 22 21 12 39 39 H 1.08997 * 117.49690 * 145.02082 * 22 21 12 40 40 H 1.09004 * 117.49975 * 214.97654 * 23 21 12 41 41 H 1.09001 * 117.50235 * 359.97239 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6905 1.1962 6 7 1.2781 -1.2170 2.1092 7 7 2.0398 -1.7372 3.0110 8 6 3.3016 -1.5227 2.6378 9 6 4.5418 -1.9501 3.3794 10 6 4.9552 -3.3236 2.9171 11 8 4.3068 -3.8986 2.0686 12 7 6.0460 -3.9127 3.4458 13 6 6.4254 -5.1598 3.0212 14 1 7.4708 -5.3833 2.8678 15 6 5.4647 -6.1364 2.7882 16 7 5.7754 -7.2132 2.1022 17 14 3.7317 -5.9185 3.4503 18 1 2.8732 -5.3131 2.4007 19 1 3.1802 -7.2415 3.8387 20 1 3.7639 -5.0276 4.6380 21 6 6.8296 -3.2180 4.4704 22 6 8.0816 -3.9206 4.9994 23 6 6.8342 -3.8125 5.8801 24 7 3.2573 -0.8630 1.5063 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 4.3354 -1.9738 4.4494 35 1 5.3464 -1.2422 3.1801 36 1 5.1048 -7.8948 1.9392 37 1 6.8613 -2.1320 4.3820 38 1 8.3220 -4.8998 4.5855 39 1 8.9368 -3.2968 5.2595 40 1 6.8694 -3.1177 6.7192 41 1 6.2539 -4.7203 6.0455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:58 Heat of formation + Delta-G solvation = 107.174206 kcal Electronic energy + Delta-G solvation = -24380.735928 eV Core-core repulsion = 20913.668319 eV Total energy + Delta-G solvation = -3467.067609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.38190 -41.04131 -38.65614 -38.07486 -35.09232 -34.56770 -34.14880 -33.42811 -30.75214 -28.54407 -28.47398 -26.88040 -25.59960 -23.97701 -23.17891 -22.83707 -21.64024 -21.07882 -19.19935 -18.29508 -18.03313 -17.73053 -17.41240 -16.34308 -16.06221 -15.60059 -15.27412 -15.22663 -15.01331 -14.82750 -14.70561 -14.54776 -14.09946 -13.60074 -13.44893 -13.37793 -13.24155 -12.94243 -12.87470 -12.85688 -12.57148 -12.39384 -12.21597 -12.17616 -12.00158 -11.96204 -11.84563 -11.60758 -11.20526 -11.17910 -10.80775 -10.45223 -9.44908 -8.45563 -6.21261 0.21087 0.93960 1.06340 1.14666 1.27759 1.48867 1.84163 2.39730 2.53529 2.85939 2.95791 3.15667 3.25702 3.50884 3.59082 3.66369 3.81317 4.11530 4.17320 4.24400 4.33824 4.39795 4.44424 4.51122 4.54509 4.58980 4.63836 4.69706 4.71439 4.76788 4.95057 4.99597 5.03825 5.10086 5.20451 5.28650 5.36770 5.51131 5.64932 5.81811 6.68507 6.82578 7.28061 7.32880 7.77420 8.60512 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.005086 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.420814 B = 5503.805325 C = 6061.573138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 C -0.148 4.148 4 C -0.156 4.156 5 N -0.120 5.120 6 N -0.080 5.080 7 N -0.317 5.317 8 C 0.181 3.819 9 C -0.031 4.031 10 C 0.448 3.552 11 O -0.586 6.586 12 N -0.445 5.445 13 C -0.328 4.328 14 H 0.081 0.919 15 C 0.042 3.958 16 N -0.912 5.912 17 Si 0.977 3.023 18 H -0.295 1.295 19 H -0.319 1.319 20 H -0.268 1.268 21 C 0.038 3.962 22 C -0.166 4.166 23 C -0.185 4.185 24 N -0.302 5.302 25 H 0.072 0.928 26 H 0.129 0.871 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.128 0.872 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.132 0.868 33 H 0.060 0.940 34 H 0.139 0.861 35 H 0.154 0.846 36 H 0.270 0.730 37 H 0.162 0.838 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.083 21.700 -0.608 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.080 3.920 3 C -0.206 4.206 4 C -0.215 4.215 5 N -0.036 5.036 6 N -0.072 5.072 7 N -0.187 5.187 8 C -0.102 4.102 9 C -0.073 4.073 10 C 0.238 3.762 11 O -0.473 6.473 12 N -0.165 5.165 13 C -0.455 4.455 14 H 0.099 0.901 15 C -0.161 4.161 16 N -0.550 5.550 17 Si 0.812 3.188 18 H -0.224 1.224 19 H -0.251 1.251 20 H -0.193 1.193 21 C -0.066 4.066 22 C -0.203 4.203 23 C -0.223 4.223 24 N -0.153 5.153 25 H 0.091 0.909 26 H 0.147 0.853 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.146 0.854 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.151 0.849 33 H 0.079 0.921 34 H 0.157 0.843 35 H 0.172 0.828 36 H 0.080 0.920 37 H 0.180 0.820 38 H 0.093 0.907 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.073 21.353 -1.230 22.234 hybrid contribution -0.261 -1.249 0.120 1.281 sum -6.334 20.104 -1.111 21.108 Atomic orbital electron populations 1.22133 0.88563 1.03937 1.05914 1.22063 0.97801 0.93820 0.78286 1.22229 1.02624 0.90171 1.05625 1.22272 1.02379 1.00357 0.96474 1.50998 1.00661 1.33616 1.18317 1.78712 1.22293 1.10039 0.96145 1.75710 1.01845 1.19260 1.21899 1.25069 0.95117 0.97903 0.92083 1.19989 0.91744 0.94606 1.00961 1.20795 0.83629 0.88202 0.83532 1.90477 1.54909 1.65839 1.36027 1.43268 1.24339 1.14992 1.33915 1.18728 0.94246 0.86898 1.45611 0.90133 1.25862 1.01873 0.94279 0.94100 1.69778 1.36673 1.11002 1.37546 0.85247 0.81828 0.74142 0.77620 1.22412 1.25089 1.19290 1.22392 0.98859 0.96951 0.88389 1.23178 0.92137 1.02447 1.02552 1.23357 1.01369 1.03259 0.94344 1.74479 1.03947 1.21178 1.15687 0.90871 0.85264 0.92632 0.91512 0.85395 0.91590 0.93918 0.84942 0.92085 0.84336 0.82827 0.92031 0.82047 0.90742 0.84967 0.84613 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 7.91 71.98 0.57 -1.73 16 2 C 0.16 3.26 1.30 3.60 0.00 3.26 16 3 C -0.15 -2.03 8.66 71.98 0.62 -1.41 16 4 C -0.16 -3.10 8.67 71.98 0.62 -2.48 16 5 N -0.12 -3.87 3.73 -152.41 -0.57 -4.44 16 6 N -0.08 -2.99 12.24 37.02 0.45 -2.54 16 7 N -0.32 -13.41 12.50 -51.26 -0.64 -14.05 16 8 C 0.18 7.16 6.86 138.55 0.95 8.11 16 9 C -0.03 -1.07 4.96 29.10 0.14 -0.93 16 10 C 0.45 21.45 5.80 87.66 0.51 21.96 16 11 O -0.59 -34.49 10.80 -3.05 -0.03 -34.52 16 12 N -0.45 -20.90 2.56 -613.13 -1.57 -22.46 16 13 C -0.33 -18.76 8.75 84.04 0.74 -18.02 16 14 H 0.08 4.83 7.02 -2.91 -0.02 4.81 16 15 C 0.04 2.64 4.97 84.93 0.42 3.06 16 16 N -0.91 -59.21 13.96 21.66 0.30 -58.91 16 17 Si 0.98 56.63 24.37 68.60 1.67 58.30 16 18 H -0.29 -18.88 6.15 99.48 0.61 -18.27 16 19 H -0.32 -18.16 7.11 99.48 0.71 -17.45 16 20 H -0.27 -14.52 7.04 99.48 0.70 -13.82 16 21 C 0.04 1.24 5.84 44.99 0.26 1.50 16 22 C -0.17 -5.05 9.80 30.62 0.30 -4.75 16 23 C -0.18 -5.50 10.38 30.62 0.32 -5.18 16 24 N -0.30 -11.00 11.83 -51.20 -0.61 -11.60 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.13 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.14 4.09 8.11 -2.39 -0.02 4.07 16 35 H 0.15 3.96 7.57 -2.39 -0.02 3.94 16 36 H 0.27 16.82 8.31 -92.71 -0.77 16.05 16 37 H 0.16 3.71 7.00 -2.39 -0.02 3.69 16 38 H 0.07 2.86 6.52 -2.39 -0.02 2.84 16 39 H 0.13 2.87 8.14 -2.39 -0.02 2.86 16 40 H 0.14 2.79 8.14 -2.38 -0.02 2.77 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -88.81 338.41 5.40 -83.41 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 0.93 Total: 3.42 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 5.46 Total: 3.41 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -2.63 Total: -114.01 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.03 Total: -34.52 kcal Atomic # 14 Polarization: 56.63 SS G_CDS: 1.67 Total: 58.30 kcal Total: -88.81 5.40 -83.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.580 kcal (2) G-P(sol) polarization free energy of solvation -88.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds