Wall clock time and date at job start Tue Mar 31 2020 03:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30714 * 125.30098 * 2 1 4 4 C 1.34310 * 110.10902 * 179.97438 * 3 2 1 5 5 N 1.32762 * 126.12291 * 179.97438 * 4 3 2 6 6 C 1.33915 * 120.00065 * 0.02562 * 5 4 3 7 7 O 1.21820 * 119.99728 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00149 * 179.97438 * 6 5 4 9 9 C 1.46925 * 120.62867 * 0.02562 * 8 6 5 10 10 C 1.53193 * 108.77836 * 126.38915 * 9 8 6 11 11 C 1.53043 * 109.31066 * 54.62837 * 10 9 8 12 12 C 1.53039 * 109.54170 * 298.63801 * 11 10 9 13 13 H 1.08998 * 109.49522 * 301.38263 * 12 11 10 14 14 C 1.50701 * 109.49751 * 181.32067 * 12 11 10 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 12 11 16 16 C 1.37871 * 119.99694 * 180.27950 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 C 1.46923 * 120.62923 * 180.02562 * 8 6 5 23 23 N 1.37289 * 107.75716 * 0.24055 * 4 3 2 24 24 H 0.96997 * 127.03112 * 179.72610 * 23 4 3 25 25 N 1.35086 * 125.29359 * 179.97438 * 2 1 3 26 26 C 1.46495 * 126.60705 * 0.02602 * 25 2 1 27 27 H 1.08997 * 109.47023 * 90.02572 * 1 2 3 28 28 H 1.08996 * 109.47796 * 210.02697 * 1 2 3 29 29 H 1.09005 * 109.46982 * 330.03167 * 1 2 3 30 30 H 1.09003 * 109.58780 * 6.60008 * 9 8 6 31 31 H 1.08996 * 109.58391 * 246.17383 * 9 8 6 32 32 H 1.09007 * 109.49571 * 294.68140 * 10 9 8 33 33 H 1.08992 * 109.52879 * 174.60399 * 10 9 8 34 34 H 1.09001 * 109.45697 * 178.61595 * 11 10 9 35 35 H 1.08999 * 109.45633 * 58.66405 * 11 10 9 36 36 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.58320 * 113.83024 * 22 8 6 38 38 H 1.08998 * 109.59011 * 353.40307 * 22 8 6 39 39 H 1.08998 * 109.47575 * 89.99357 * 26 25 2 40 40 H 1.09000 * 109.47092 * 209.99869 * 26 25 2 41 41 H 1.08999 * 109.46930 * 329.99357 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2624 1.0668 0.0000 4 6 3.5585 0.7148 0.0006 5 7 4.5949 1.5446 0.0002 6 6 4.3927 2.8684 -0.0002 7 8 3.2578 3.3112 0.0002 8 7 5.4447 3.7109 0.0000 9 6 6.8192 3.1919 0.0001 10 6 7.5847 3.8228 -1.1673 11 6 7.4882 5.3471 -1.0709 12 6 6.0219 5.7744 -1.1675 13 1 5.6021 5.4234 -2.1102 14 6 5.9308 7.2773 -1.1050 15 1 6.8288 7.8691 -1.0058 16 6 4.7006 7.8965 -1.1682 17 7 3.6070 7.1759 -1.2886 18 14 4.5870 9.7591 -1.0829 19 1 5.9502 10.3325 -0.9487 20 1 3.9529 10.2738 -2.3232 21 1 3.7675 10.1519 0.0915 22 6 5.2388 5.1656 0.0001 23 7 3.6200 -0.6567 -0.0045 24 1 4.4197 -1.2056 -0.0092 25 7 2.2875 -1.1026 0.0005 26 6 1.8324 -2.4950 0.0006 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3633 0.8903 0.5134 30 1 6.8008 2.1084 -0.1180 31 1 7.3074 3.4508 0.9396 32 1 7.1499 3.4896 -2.1097 33 1 8.6310 3.5208 -1.1225 34 1 8.0527 5.7989 -1.8866 35 1 7.9007 5.6774 -0.1175 36 1 2.7415 7.6116 -1.3326 37 1 5.5983 5.5854 0.9396 38 1 4.1776 5.3845 -0.1180 39 1 1.7198 -2.8406 -1.0270 40 1 2.5653 -3.1168 0.5148 41 1 0.8734 -2.5638 0.5142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596919785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:36 Heat of formation + Delta-G solvation = 73.413118 kcal Electronic energy + Delta-G solvation = -23841.510879 eV Core-core repulsion = 20372.979280 eV Total energy + Delta-G solvation = -3468.531600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.20338 -40.65847 -38.37042 -35.78726 -35.15364 -34.70736 -33.34445 -32.75510 -31.38413 -29.96540 -27.59380 -26.93391 -26.00771 -23.57803 -23.26591 -21.96359 -21.32965 -19.92590 -18.96903 -18.52481 -17.83909 -17.46790 -17.04874 -16.53643 -16.33330 -15.89736 -15.20414 -15.08106 -14.94368 -14.61319 -14.31792 -14.22514 -14.02978 -13.77143 -13.57372 -13.39860 -13.19898 -12.87498 -12.61899 -12.23699 -12.19108 -11.77690 -11.68254 -11.61456 -11.51828 -11.40774 -11.40199 -10.93704 -10.86800 -10.50978 -9.92380 -9.35261 -8.76523 -8.04958 -6.24768 -0.02852 0.19216 1.40770 1.42549 1.55787 1.69404 2.20326 2.44862 2.79661 3.15943 3.19875 3.22698 3.78526 3.96957 4.15907 4.26589 4.33079 4.39945 4.45517 4.63283 4.65361 4.68220 4.76810 4.80522 4.84844 4.90410 5.01084 5.07920 5.12784 5.30903 5.34301 5.38489 5.55337 5.61336 5.84553 5.98792 6.05473 6.24728 6.40028 6.59191 6.88978 6.94635 7.19342 7.44889 8.14741 8.98661 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.003988 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.096104 B = 7020.048111 C = 8146.108423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.380 3.620 3 N -0.597 5.597 4 C 0.593 3.407 5 N -0.672 5.672 6 C 0.660 3.340 7 O -0.635 6.635 8 N -0.611 5.611 9 C 0.124 3.876 10 C -0.123 4.123 11 C -0.102 4.102 12 C 0.040 3.960 13 H -0.021 1.021 14 C -0.537 4.537 15 H 0.065 0.935 16 C 0.004 3.996 17 N -0.917 5.917 18 Si 0.966 3.034 19 H -0.258 1.258 20 H -0.280 1.280 21 H -0.282 1.282 22 C 0.143 3.857 23 N -0.496 5.496 24 H 0.466 0.534 25 N -0.381 5.381 26 C 0.083 3.917 27 H 0.120 0.880 28 H 0.139 0.861 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.259 0.741 37 H 0.027 0.973 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 -28.004 3.709 28.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.108 3.892 3 N -0.335 5.335 4 C 0.229 3.771 5 N -0.440 5.440 6 C 0.359 3.641 7 O -0.515 6.515 8 N -0.346 5.346 9 C 0.001 3.999 10 C -0.161 4.161 11 C -0.140 4.140 12 C 0.021 3.979 13 H -0.003 1.003 14 C -0.575 4.575 15 H 0.083 0.917 16 C -0.195 4.195 17 N -0.555 5.555 18 Si 0.791 3.209 19 H -0.181 1.181 20 H -0.206 1.206 21 H -0.208 1.208 22 C 0.020 3.980 23 N -0.231 5.231 24 H 0.319 0.681 25 N -0.180 5.180 26 C -0.054 4.054 27 H 0.138 0.862 28 H 0.157 0.843 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.776 -27.288 3.703 27.949 hybrid contribution -0.087 0.635 -0.124 0.652 sum -4.863 -26.653 3.579 27.329 Atomic orbital electron populations 1.20968 0.78848 1.07335 1.06936 1.25360 0.98116 0.80164 0.85609 1.72112 1.01788 1.28150 1.31430 1.20636 0.88118 0.83156 0.85208 1.68518 1.27224 1.02836 1.45423 1.17111 0.83620 0.85196 0.78146 1.90918 1.23695 1.80572 1.56307 1.47397 1.05864 1.05998 1.75334 1.21629 0.80588 0.99625 0.98052 1.21899 1.00937 0.95545 0.97698 1.21501 0.96522 0.95123 1.00849 1.18902 0.92391 0.94467 0.92186 1.00332 1.21552 0.92991 0.92121 1.50834 0.91665 1.26039 0.95468 1.03484 0.94534 1.70182 0.98290 1.36894 1.50163 0.85391 0.78565 0.79487 0.77500 1.18149 1.20586 1.20761 1.21520 1.03062 0.76151 0.97243 1.45050 0.99557 1.04246 1.74284 0.68130 1.48178 0.93663 1.09106 1.67018 1.22823 1.03741 0.72524 1.06315 0.86191 0.84258 0.88908 0.88308 0.91972 0.94112 0.87963 0.92704 0.92410 0.93226 0.95493 0.91011 0.88210 0.87368 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.18 71.24 0.73 -0.03 16 2 C 0.38 8.06 7.93 138.05 1.10 9.16 16 3 N -0.60 -22.98 9.19 -188.98 -1.74 -24.72 16 4 C 0.59 22.33 8.76 261.09 2.29 24.61 16 5 N -0.67 -30.62 9.04 -328.11 -2.97 -33.59 16 6 C 0.66 37.21 8.22 179.32 1.47 38.68 16 7 O -0.64 -41.40 14.29 -4.73 -0.07 -41.46 16 8 N -0.61 -32.83 2.97 -837.46 -2.49 -35.32 16 9 C 0.12 5.13 6.43 86.36 0.56 5.68 16 10 C -0.12 -4.81 6.08 30.67 0.19 -4.62 16 11 C -0.10 -4.73 5.11 30.62 0.16 -4.57 16 12 C 0.04 2.35 2.25 -11.46 -0.03 2.32 16 13 H -0.02 -1.45 8.14 -2.39 -0.02 -1.47 16 14 C -0.54 -32.83 8.57 25.60 0.22 -32.61 16 15 H 0.07 3.79 7.74 -2.91 -0.02 3.76 16 16 C 0.00 0.23 5.30 84.65 0.45 0.68 16 17 N -0.92 -61.57 11.39 21.45 0.24 -61.33 16 18 Si 0.97 47.86 29.54 68.60 2.03 49.88 16 19 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 20 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 22 C 0.14 8.68 5.40 86.37 0.47 9.15 16 23 N -0.50 -10.60 7.50 -59.27 -0.44 -11.04 16 24 H 0.47 6.59 8.96 -213.06 -1.91 4.68 16 25 N -0.38 -5.13 4.05 -359.47 -1.46 -6.59 16 26 C 0.08 -0.13 11.30 127.77 1.44 1.32 16 27 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.14 -0.26 7.05 -2.39 -0.02 -0.28 16 29 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.10 3.76 6.85 -2.39 -0.02 3.75 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.26 16.56 8.31 -92.71 -0.77 15.79 16 37 H 0.03 1.60 8.14 -2.39 -0.02 1.59 16 38 H 0.07 5.07 5.12 -2.39 -0.01 5.06 16 39 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.11 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.14 -1.08 7.03 -2.39 -0.02 -1.10 16 Total: -1.00 -107.97 335.45 1.29 -106.68 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -0.86 Total: 7.71 kcal Atomic # 6 Polarization: 40.74 SS G_CDS: 9.03 Total: 49.78 kcal Atomic # 7 Polarization: -163.74 SS G_CDS: -8.85 Total: -172.59 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -0.07 Total: -41.46 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.88 kcal Total: -107.97 1.29 -106.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596919785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.097 kcal (2) G-P(sol) polarization free energy of solvation -107.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds