Wall clock time and date at job start Tue Mar 31 2020 03:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46546 * 2 1 4 4 N 1.46501 * 109.47117 * 119.99878 * 2 1 3 5 5 C 1.46499 * 120.00015 * 295.12659 * 4 2 1 6 6 C 1.50698 * 109.46970 * 95.60694 * 5 4 2 7 7 H 1.07991 * 120.00098 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99818 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00027 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99840 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46995 * 60.00536 * 10 8 6 12 12 H 1.48506 * 109.46993 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47638 * 300.00497 * 10 8 6 14 14 C 1.34774 * 119.99895 * 115.12816 * 4 2 1 15 15 O 1.21626 * 120.00047 * 5.65858 * 14 4 2 16 16 C 1.47308 * 119.99796 * 185.65388 * 14 4 2 17 17 N 1.30675 * 125.44875 * 355.18309 * 16 14 4 18 18 N 1.39112 * 108.45831 * 179.79231 * 17 16 14 19 19 C 1.46631 * 129.39005 * 181.23299 * 18 17 16 20 20 C 1.53679 * 107.25627 * 154.80156 * 19 18 17 21 21 C 1.52943 * 109.60171 * 52.36547 * 20 19 18 22 22 N 1.46744 * 110.51550 * 302.47765 * 21 20 19 23 23 C 1.30625 * 119.18271 * 31.65172 * 22 21 20 24 24 N 1.36268 * 129.73800 * 178.22599 * 23 22 21 25 25 H 1.08994 * 109.46863 * 299.99683 * 1 2 3 26 26 H 1.09003 * 109.47156 * 60.00498 * 1 2 3 27 27 H 1.08999 * 109.46427 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47290 * 240.00516 * 2 1 3 29 29 H 1.09004 * 109.46993 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46986 * 299.99606 * 3 2 1 31 31 H 1.08991 * 109.47535 * 60.00099 * 3 2 1 32 32 H 1.08997 * 109.47316 * 215.61506 * 5 4 2 33 33 H 1.09003 * 109.47025 * 335.61315 * 5 4 2 34 34 H 0.97009 * 120.00151 * 179.97438 * 9 8 6 35 35 H 1.08992 * 109.90048 * 274.24347 * 19 18 17 36 36 H 1.09005 * 109.89921 * 35.37111 * 19 18 17 37 37 H 1.09004 * 109.44931 * 292.32587 * 20 19 18 38 38 H 1.08998 * 109.44970 * 172.40912 * 20 19 18 39 39 H 1.08998 * 109.27128 * 182.20557 * 21 20 19 40 40 H 1.09004 * 109.23850 * 62.72336 * 21 20 19 41 41 H 0.97004 * 126.08036 * 1.29451 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7547 -0.1309 2.5241 6 6 0.5251 -0.7785 3.1070 7 1 -0.0064 -1.5319 2.5448 8 6 0.0793 -0.4098 4.3586 9 7 0.7269 0.5073 5.0435 10 14 -1.4443 -1.2131 5.0814 11 1 -1.2250 -2.6774 5.1957 12 1 -1.7118 -0.6456 6.4275 13 1 -2.6079 -0.9545 4.1957 14 6 2.7103 -1.8408 1.0750 15 8 3.0184 -2.2519 -0.0275 16 6 3.0935 -2.6000 2.2778 17 7 2.8978 -2.2153 3.5112 18 7 3.3896 -3.1992 4.3627 19 6 3.3843 -3.2492 5.8282 20 6 3.4394 -4.7303 6.2341 21 6 4.6111 -5.4129 5.5267 22 7 4.4846 -5.2741 4.0714 23 6 3.9151 -4.2059 3.5805 24 7 3.7158 -3.8436 2.2821 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1300 1.4427 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 2.6084 -0.3207 3.1746 33 1 1.5939 0.9439 2.4400 34 1 0.4131 0.7670 5.9239 35 1 4.2552 -2.7243 6.2205 36 1 2.4714 -2.7932 6.2116 37 1 2.5082 -5.2198 5.9486 38 1 3.5728 -4.8062 7.3132 39 1 4.6216 -6.4712 5.7876 40 1 5.5443 -4.9531 5.8522 41 1 3.9657 -4.3602 1.5000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597037704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:56 Heat of formation + Delta-G solvation = 75.988289 kcal Electronic energy + Delta-G solvation = -24905.020983 eV Core-core repulsion = 21436.601051 eV Total energy + Delta-G solvation = -3468.419932 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.52324 -39.26598 -36.74729 -35.99798 -33.62067 -32.96962 -31.74115 -30.56635 -29.84727 -27.29598 -26.74255 -25.39460 -23.66033 -23.03711 -22.82774 -20.81256 -19.42047 -18.51947 -17.37544 -16.81613 -16.45269 -16.07029 -15.61722 -15.08247 -14.89559 -14.49502 -14.15273 -13.84863 -13.57510 -13.44670 -13.18736 -12.93042 -12.58016 -12.37863 -12.00097 -11.81988 -11.59977 -11.50237 -11.28182 -11.05603 -10.98045 -10.86267 -10.54798 -10.37453 -10.15609 -10.02471 -9.73978 -9.72357 -9.66078 -8.81404 -8.46155 -7.90776 -7.13990 -6.11690 -4.12826 1.81224 2.41367 2.83570 2.88486 3.22730 3.27594 3.31732 3.68338 4.02778 4.36199 4.57896 4.93170 5.01931 5.08197 5.24209 5.32511 5.46100 5.50751 5.57834 5.65747 5.73108 5.73788 5.94280 5.98670 6.03203 6.07455 6.19349 6.27763 6.29875 6.34621 6.61761 6.70684 6.84293 6.92099 7.28741 7.39937 7.51020 7.78653 8.02951 8.11219 8.19494 8.46689 8.61729 8.87826 9.49065 10.96234 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012742 B = 0.007598 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.903842 B = 3684.324092 C = 5305.224994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 C -0.160 4.160 4 N -0.562 5.562 5 C 0.225 3.775 6 C -0.510 4.510 7 H 0.054 0.946 8 C 0.073 3.927 9 N -0.887 5.887 10 Si 0.884 3.116 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.599 3.401 15 O -0.563 6.563 16 C 0.216 3.784 17 N -0.143 5.143 18 N -0.476 5.476 19 C 0.161 3.839 20 C -0.167 4.167 21 C 0.082 3.918 22 N -0.647 5.647 23 C 0.558 3.442 24 N -0.617 5.617 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -3.056 -1.269 5.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.034 3.966 3 C -0.217 4.217 4 N -0.292 5.292 5 C 0.105 3.895 6 C -0.549 4.549 7 H 0.072 0.928 8 C -0.129 4.129 9 N -0.525 5.525 10 Si 0.712 3.288 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.383 3.617 15 O -0.442 6.442 16 C -0.064 4.064 17 N 0.034 4.966 18 N -0.286 5.286 19 C 0.040 3.960 20 C -0.207 4.207 21 C -0.049 4.049 22 N -0.395 5.395 23 C 0.194 3.806 24 N -0.254 5.254 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 4.038 -3.007 -1.081 5.149 hybrid contribution -0.992 -0.710 0.512 1.323 sum 3.046 -3.717 -0.568 4.839 Atomic orbital electron populations 1.22102 0.94507 1.02354 1.02352 1.21006 0.94698 0.92820 0.88044 1.22137 1.01141 0.95900 1.02562 1.48208 1.49715 1.20767 1.10506 1.19938 0.98524 0.94924 0.76097 1.21177 1.09845 1.22398 1.01484 0.92796 1.24737 0.96636 0.94988 0.96556 1.69905 1.39490 1.30460 1.12679 0.86789 0.83856 0.79695 0.78420 1.20587 1.21252 1.20274 1.16348 0.79430 0.81273 0.84655 1.90763 1.57875 1.70001 1.25595 1.23599 1.01254 0.86964 0.94592 1.78002 1.11768 1.10021 0.96763 1.49647 1.55893 1.16677 1.06350 1.21636 1.03910 0.97041 0.73394 1.22426 1.01253 0.95083 1.01916 1.21649 0.95943 1.00399 0.86899 1.72911 1.36110 1.18442 1.12015 1.20064 0.90525 0.86991 0.83004 1.41987 1.58446 1.19002 1.05983 0.90336 0.92775 0.92798 0.89198 0.92716 0.91950 0.91205 0.91676 0.93941 0.92852 0.90630 0.88377 0.90879 0.89242 0.90107 0.92859 0.71631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 8.90 37.16 0.33 -2.21 16 2 C 0.14 2.34 3.25 -67.92 -0.22 2.12 16 3 C -0.16 -2.35 9.09 37.16 0.34 -2.01 16 4 N -0.56 -11.27 2.37 -168.77 -0.40 -11.67 16 5 C 0.22 5.06 4.14 -5.20 -0.02 5.04 16 6 C -0.51 -12.54 6.93 -34.44 -0.24 -12.78 16 7 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 8 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 9 N -0.89 -23.30 13.29 55.43 0.74 -22.57 16 10 Si 0.88 20.29 29.54 -169.99 -5.02 15.27 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.60 12.30 7.61 -12.57 -0.10 12.20 16 15 O -0.56 -11.80 16.44 5.25 0.09 -11.72 16 16 C 0.22 4.39 7.68 -153.06 -1.18 3.22 16 17 N -0.14 -3.06 8.07 32.66 0.26 -2.80 16 18 N -0.48 -9.16 4.12 -61.49 -0.25 -9.41 16 19 C 0.16 2.55 7.42 -3.62 -0.03 2.52 16 20 C -0.17 -2.20 6.12 -26.41 -0.16 -2.36 16 21 C 0.08 1.16 7.08 -3.94 -0.03 1.13 16 22 N -0.65 -11.42 11.08 -61.79 -0.68 -12.11 16 23 C 0.56 10.41 8.73 -320.86 -2.80 7.61 16 24 N -0.62 -11.19 6.22 -11.12 -0.07 -11.25 16 25 H 0.08 1.44 7.23 -51.93 -0.38 1.06 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.53 6.91 -51.93 -0.36 1.17 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.11 6.49 -51.93 -0.34 0.77 16 32 H 0.07 1.59 5.64 -51.93 -0.29 1.30 16 33 H 0.04 0.99 6.18 -51.93 -0.32 0.67 16 34 H 0.26 6.66 8.31 -40.82 -0.34 6.33 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.44 6.98 8.96 -40.82 -0.37 6.62 16 LS Contribution 333.84 15.07 5.03 5.03 Total: -1.00 -28.63 333.84 -10.33 -38.97 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.82 Total: 6.01 kcal Atomic # 6 Polarization: 20.44 SS G_CDS: -4.20 Total: 16.25 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -0.41 Total: -69.81 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.63 -10.33 -38.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597037704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.955 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds