Wall clock time and date at job start Tue Mar 31 2020 03:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99544 * 2 1 4 4 C 1.52998 * 109.47265 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46727 * 65.00362 * 4 3 2 6 6 C 1.37101 * 120.00005 * 269.99622 * 5 4 3 7 7 H 1.07998 * 119.99705 * 142.93563 * 6 5 4 8 8 C 1.38951 * 120.00356 * 322.94080 * 6 5 4 9 9 N 1.31412 * 119.99579 * 337.74156 * 8 6 5 10 10 Si 1.86795 * 119.99853 * 157.74048 * 8 6 5 11 11 H 1.48498 * 109.47141 * 60.00738 * 10 8 6 12 12 H 1.48513 * 109.46804 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47649 * 299.99711 * 10 8 6 14 14 C 1.34771 * 119.99971 * 90.00191 * 5 4 3 15 15 O 1.21297 * 120.00215 * 5.04371 * 14 5 4 16 16 C 1.50700 * 120.00047 * 185.04046 * 14 5 4 17 17 H 1.09003 * 109.46545 * 36.72999 * 16 14 5 18 18 C 1.53149 * 109.46891 * 156.71695 * 16 14 5 19 19 C 1.53401 * 109.24038 * 189.49835 * 18 16 14 20 20 C 1.51042 * 108.20696 * 311.17301 * 19 18 16 21 21 N 1.30098 * 127.38538 * 195.94456 * 20 19 18 22 22 C 1.34297 * 109.20711 * 179.97438 * 21 20 19 23 23 C 1.34853 * 108.07065 * 0.29886 * 22 21 20 24 24 N 1.35420 * 123.98299 * 15.94400 * 20 19 18 25 25 C 1.46473 * 124.82281 * 0.14391 * 24 20 19 26 26 H 1.09002 * 109.47091 * 299.99101 * 1 2 3 27 27 H 1.08997 * 109.47455 * 60.00081 * 1 2 3 28 28 H 1.09005 * 109.46513 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47039 * 60.00464 * 3 2 1 30 30 H 1.08996 * 109.47612 * 300.00656 * 3 2 1 31 31 H 1.09005 * 109.47394 * 305.00559 * 4 3 2 32 32 H 1.08999 * 109.47678 * 185.00415 * 4 3 2 33 33 H 0.97002 * 119.99503 * 185.18997 * 9 8 6 34 34 H 1.08993 * 109.51240 * 69.56675 * 18 16 14 35 35 H 1.09004 * 109.51157 * 309.42281 * 18 16 14 36 36 H 1.08997 * 109.71861 * 191.49389 * 19 18 16 37 37 H 1.09003 * 109.71509 * 70.84943 * 19 18 16 38 38 H 1.07997 * 125.96080 * 180.02562 * 22 21 20 39 39 H 1.08005 * 126.65047 * 179.75177 * 23 22 21 40 40 H 1.08999 * 109.58373 * 257.31035 * 25 24 20 41 41 H 1.09003 * 109.69455 * 136.97046 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9755 0.5647 -1.2528 6 6 4.0969 -0.7983 -1.3372 7 1 3.8294 -1.3087 -2.2505 8 6 4.5641 -1.5230 -0.2475 9 7 5.2859 -0.9288 0.6760 10 14 4.1662 -3.3417 -0.0956 11 1 4.7125 -4.0678 -1.2701 12 1 4.7770 -3.8800 1.1465 13 1 2.6933 -3.5235 -0.0424 14 6 4.2613 1.3341 -2.3218 15 8 4.2427 2.5428 -2.2215 16 6 4.6039 0.6928 -3.6418 17 1 3.9985 -0.2033 -3.7783 18 6 4.3185 1.6794 -4.7779 19 6 4.4398 0.9508 -6.1224 20 6 5.7385 0.1796 -6.1258 21 7 6.3527 -0.3286 -7.1539 22 6 7.4764 -0.9371 -6.7408 23 6 7.5557 -0.8046 -5.4012 24 7 6.4598 -0.0931 -5.0126 25 6 6.0887 0.3131 -3.6551 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6884 1.8465 -0.8899 31 1 3.8515 0.5683 0.8409 32 1 3.9784 2.1767 0.0890 33 1 5.6750 -1.4488 1.3965 34 1 5.0390 2.4963 -4.7403 35 1 3.3096 2.0776 -4.6695 36 1 4.4412 1.6769 -6.9353 37 1 3.6032 0.2628 -6.2446 38 1 8.1895 -1.4477 -7.3710 39 1 8.3377 -1.1852 -4.7608 40 1 6.6882 1.1722 -3.3541 41 1 6.2609 -0.5125 -2.9646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597754386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:46 Heat of formation + Delta-G solvation = -31.520195 kcal Electronic energy + Delta-G solvation = -24655.855507 eV Core-core repulsion = 21150.480906 eV Total energy + Delta-G solvation = -3505.374601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.23382 -40.79575 -38.68510 -37.10850 -36.52437 -34.15054 -33.53373 -31.73272 -30.24085 -29.33222 -27.28742 -26.64345 -25.54229 -24.31020 -22.83283 -22.25429 -20.99881 -20.02180 -18.73580 -18.05345 -17.86407 -17.10594 -16.97047 -16.64376 -16.21273 -16.12287 -15.76337 -15.59425 -15.09936 -14.90063 -14.74801 -14.58840 -14.42884 -13.72311 -13.61149 -13.40395 -12.97132 -12.88022 -12.82178 -12.70067 -12.53564 -12.40203 -12.14201 -12.02373 -11.93523 -11.73228 -11.03101 -10.96631 -10.54800 -10.51721 -10.34545 -9.44665 -9.24701 -8.28353 -5.97986 1.15751 1.40058 1.50022 1.55744 1.71198 2.06445 2.18984 2.31800 2.82627 3.00416 3.15053 3.40860 3.65452 3.73102 3.82435 4.08862 4.22833 4.26861 4.33523 4.40625 4.49299 4.52637 4.54315 4.59831 4.61670 4.62585 4.69926 4.75742 4.82146 4.90331 4.94170 5.06072 5.21696 5.35516 5.45410 5.54520 5.89057 5.99269 6.22910 6.40588 6.42299 7.16143 7.16308 7.56907 7.97929 8.74992 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015513 B = 0.005879 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.484107 B = 4761.760197 C = 5678.759051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.065 3.935 4 C 0.107 3.893 5 N -0.430 5.430 6 C -0.335 4.335 7 H 0.088 0.912 8 C 0.023 3.977 9 N -0.887 5.887 10 Si 0.965 3.035 11 H -0.268 1.268 12 H -0.286 1.286 13 H -0.273 1.273 14 C 0.468 3.532 15 O -0.627 6.627 16 C -0.090 4.090 17 H 0.095 0.905 18 C -0.095 4.095 19 C -0.025 4.025 20 C 0.190 3.810 21 N -0.521 5.521 22 C -0.049 4.049 23 C -0.059 4.059 24 N -0.453 5.453 25 C 0.134 3.866 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.271 0.729 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.193 0.807 39 H 0.196 0.804 40 H 0.076 0.924 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 -0.367 -5.090 5.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.013 4.013 4 C -0.017 4.017 5 N -0.147 5.147 6 C -0.463 4.463 7 H 0.106 0.894 8 C -0.181 4.181 9 N -0.524 5.524 10 Si 0.790 3.210 11 H -0.193 1.193 12 H -0.212 1.212 13 H -0.198 1.198 14 C 0.257 3.743 15 O -0.515 6.515 16 C -0.112 4.112 17 H 0.113 0.887 18 C -0.134 4.134 19 C -0.064 4.064 20 C -0.072 4.072 21 N -0.241 5.241 22 C -0.197 4.197 23 C -0.192 4.192 24 N -0.135 5.135 25 C 0.011 3.989 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.210 0.790 39 H 0.213 0.787 40 H 0.094 0.906 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.020 0.080 -5.421 6.206 hybrid contribution 0.174 -0.750 1.449 1.641 sum -2.846 -0.669 -3.971 4.931 Atomic orbital electron populations 1.22873 0.80798 1.03150 1.00320 1.88091 1.20277 1.27729 1.95298 1.22813 0.94296 0.84670 0.99521 1.21462 0.91644 0.98094 0.90477 1.43521 1.55316 1.06456 1.09395 1.19315 1.44648 0.80768 1.01554 0.89423 1.25802 0.93829 1.02822 0.95629 1.69911 1.29377 1.38217 1.14933 0.85422 0.78808 0.79071 0.77669 1.19262 1.21173 1.19842 1.20483 0.80430 0.86412 0.86998 1.90517 1.59481 1.15489 1.86024 1.21196 0.95792 1.00465 0.93748 0.88666 1.21434 1.03646 0.96816 0.91463 1.20282 0.89713 0.98051 0.98329 1.23788 0.98493 1.03412 0.81488 1.70024 1.08714 1.15652 1.29688 1.22780 0.97995 1.05853 0.93029 1.23098 0.94393 1.03771 0.97939 1.45547 1.19093 1.40588 1.08279 1.21572 0.95238 1.01627 0.80473 0.93085 0.93970 0.89198 0.91660 0.94766 0.88720 0.91870 0.91903 0.91774 0.89567 0.87007 0.88127 0.78994 0.78671 0.90608 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 11.01 113.37 1.25 1.96 16 2 O -0.39 -15.65 10.18 -148.98 -1.52 -17.17 16 3 C 0.06 2.49 6.28 71.98 0.45 2.94 16 4 C 0.11 4.85 5.47 86.38 0.47 5.32 16 5 N -0.43 -20.04 2.50 -635.53 -1.59 -21.63 16 6 C -0.34 -15.75 7.44 84.04 0.63 -15.12 16 7 H 0.09 4.02 6.48 -2.91 -0.02 4.00 16 8 C 0.02 1.10 4.94 84.93 0.42 1.52 16 9 N -0.89 -44.58 11.48 21.66 0.25 -44.33 16 10 Si 0.96 39.07 29.61 68.60 2.03 41.10 16 11 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 12 H -0.29 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 14 C 0.47 20.77 6.73 87.66 0.59 21.36 16 15 O -0.63 -30.45 15.79 -3.08 -0.05 -30.50 16 16 C -0.09 -3.30 1.83 -11.40 -0.02 -3.33 16 17 H 0.10 3.52 6.56 -2.39 -0.02 3.50 16 18 C -0.10 -2.96 4.63 30.78 0.14 -2.82 16 19 C -0.03 -0.68 6.33 30.09 0.19 -0.49 16 20 C 0.19 6.27 7.65 138.23 1.06 7.32 16 21 N -0.52 -17.73 11.24 -187.51 -2.11 -19.84 16 22 C -0.05 -1.45 11.87 83.54 0.99 -0.46 16 23 C -0.06 -1.72 11.64 83.22 0.97 -0.75 16 24 N -0.45 -14.98 3.13 -513.80 -1.61 -16.59 16 25 C 0.13 4.73 6.15 86.47 0.53 5.26 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 4.68 5.52 -2.38 -0.01 4.67 16 32 H 0.06 2.92 7.36 -2.39 -0.02 2.90 16 33 H 0.27 13.06 8.32 -92.71 -0.77 12.29 16 34 H 0.06 2.12 8.12 -2.39 -0.02 2.10 16 35 H 0.09 2.59 8.12 -2.39 -0.02 2.57 16 36 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 39 H 0.20 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.08 2.76 8.12 -2.39 -0.02 2.74 16 41 H 0.10 3.71 7.48 -2.39 -0.02 3.69 16 Total: -1.00 -61.11 336.43 4.10 -57.01 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 1.03 Total: 29.24 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 7.67 Total: 22.71 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -5.06 Total: -102.39 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -1.57 Total: -47.67 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -61.11 4.10 -57.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597754386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.488 kcal (2) G-P(sol) polarization free energy of solvation -61.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds