Wall clock time and date at job start Tue Mar 31 2020 03:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42907 * 113.99975 * 2 1 4 4 C 1.52998 * 109.47023 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47188 * 65.00463 * 4 3 2 6 6 C 1.37099 * 120.00047 * 269.99606 * 5 4 3 7 7 H 1.07995 * 120.00010 * 142.37958 * 6 5 4 8 8 C 1.38949 * 119.99858 * 322.38915 * 6 5 4 9 9 N 1.31409 * 120.00341 * 338.27824 * 8 6 5 10 10 Si 1.86800 * 119.99923 * 158.28145 * 8 6 5 11 11 H 1.48495 * 109.47514 * 59.99615 * 10 8 6 12 12 H 1.48507 * 109.47079 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47162 * 299.99391 * 10 8 6 14 14 C 1.34783 * 120.00107 * 89.99700 * 5 4 3 15 15 O 1.21286 * 119.99719 * 5.16729 * 14 5 4 16 16 C 1.50692 * 119.99789 * 185.17074 * 14 5 4 17 17 H 1.08996 * 109.44073 * 36.74973 * 16 14 5 18 18 C 1.53121 * 109.43170 * 156.61275 * 16 14 5 19 19 C 1.53502 * 109.30423 * 189.99116 * 18 16 14 20 20 C 1.50715 * 108.05794 * 311.30369 * 19 18 16 21 21 C 1.33864 * 128.67949 * 195.78056 * 20 19 18 22 22 N 1.34424 * 107.79662 * 179.84518 * 21 20 19 23 23 C 1.30793 * 109.32165 * 0.02562 * 22 21 20 24 24 N 1.34407 * 108.55120 * 0.06608 * 23 22 21 25 25 C 1.46470 * 128.43915 * 179.81999 * 24 23 22 26 26 H 1.08996 * 109.47776 * 59.99233 * 1 2 3 27 27 H 1.09000 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47190 * 299.99342 * 1 2 3 29 29 H 1.08999 * 109.46354 * 60.00611 * 3 2 1 30 30 H 1.08992 * 109.47078 * 300.00510 * 3 2 1 31 31 H 1.09005 * 109.47350 * 304.99981 * 4 3 2 32 32 H 1.09006 * 109.46707 * 185.00451 * 4 3 2 33 33 H 0.96995 * 120.00409 * 185.14111 * 9 8 6 34 34 H 1.09000 * 109.49405 * 309.93763 * 18 16 14 35 35 H 1.08998 * 109.49811 * 70.04064 * 18 16 14 36 36 H 1.08998 * 109.74138 * 70.94834 * 19 18 16 37 37 H 1.09000 * 109.73754 * 191.61593 * 19 18 16 38 38 H 1.07999 * 126.10156 * 0.10425 * 21 20 19 39 39 H 1.08000 * 125.71985 * 180.10254 * 23 22 21 40 40 H 1.08998 * 109.60197 * 317.06648 * 25 24 23 41 41 H 1.08996 * 109.60233 * 77.54916 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.0969 -0.7984 -1.3371 7 1 3.8209 -1.3098 -2.2474 8 6 4.5748 -1.5219 -0.2513 9 7 5.2961 -0.9243 0.6703 10 14 4.1920 -3.3441 -0.1018 11 1 4.7384 -4.0632 -1.2805 12 1 4.8127 -3.8804 1.1362 13 1 2.7208 -3.5376 -0.0422 14 6 4.2614 1.3340 -2.3219 15 8 4.2451 2.5425 -2.2209 16 6 4.6012 0.6926 -3.6425 17 1 3.9935 -0.2020 -3.7783 18 6 4.3135 1.6797 -4.7771 19 6 4.4192 0.9500 -6.1235 20 6 5.7091 0.1706 -6.1325 21 6 6.3521 -0.3710 -7.1742 22 7 7.4623 -0.9676 -6.7067 23 6 7.5239 -0.8115 -5.4096 24 7 6.4493 -0.1091 -5.0118 25 6 6.0843 0.3069 -3.6557 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.6886 1.8463 0.8901 30 1 1.6885 1.8464 -0.8899 31 1 3.8514 0.5682 0.8410 32 1 3.9784 2.1766 0.0890 33 1 5.6920 -1.4427 1.3881 34 1 3.3082 2.0848 -4.6608 35 1 5.0396 2.4920 -4.7455 36 1 3.5764 0.2688 -6.2402 37 1 4.4211 1.6761 -6.9365 38 1 6.0374 -0.3317 -8.2066 39 1 8.3074 -1.1840 -4.7662 40 1 6.2549 -0.5165 -2.9622 41 1 6.6871 1.1662 -3.3621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597754956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:42 Heat of formation + Delta-G solvation = -15.518892 kcal Electronic energy + Delta-G solvation = -24659.451104 eV Core-core repulsion = 21154.770372 eV Total energy + Delta-G solvation = -3504.680732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.97736 -39.09974 -37.20372 -35.71033 -34.77298 -32.65627 -31.71470 -30.57589 -29.04730 -27.41489 -25.90382 -24.93109 -24.20528 -22.80513 -21.31569 -21.03868 -19.28276 -18.67474 -17.19445 -16.50318 -16.39191 -15.57236 -15.47197 -15.19291 -14.61064 -14.48883 -14.32264 -14.08932 -13.73326 -13.54949 -13.44162 -13.10691 -12.84008 -12.57294 -12.07308 -11.82755 -11.57944 -11.34498 -11.19843 -11.18784 -11.10743 -10.80396 -10.56420 -10.48779 -10.45301 -10.10058 -9.65951 -9.25424 -9.12883 -9.06178 -8.57856 -8.02527 -7.61741 -6.45865 -4.12890 2.41141 3.07438 3.15435 3.19217 3.24728 3.45436 3.69106 4.04432 4.40081 4.51583 4.86243 4.92293 5.01989 5.06935 5.23363 5.30597 5.58704 5.60839 5.62553 5.64729 5.72611 5.76414 5.89554 5.94851 5.97528 5.98466 6.07800 6.12695 6.20295 6.27967 6.40450 6.56151 6.61247 6.76084 7.04998 7.15191 7.38552 7.56325 7.70975 7.88938 8.23974 8.37295 8.99211 9.35104 9.76925 10.57133 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015433 B = 0.005899 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.825541 B = 4745.717009 C = 5665.742409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.054 3.946 4 C 0.110 3.890 5 N -0.421 5.421 6 C -0.335 4.335 7 H 0.086 0.914 8 C 0.057 3.943 9 N -0.860 5.860 10 Si 0.912 3.088 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.269 1.269 14 C 0.473 3.527 15 O -0.604 6.604 16 C -0.096 4.096 17 H 0.096 0.904 18 C -0.104 4.104 19 C -0.046 4.046 20 C -0.021 4.021 21 C -0.036 4.036 22 N -0.505 5.505 23 C 0.181 3.819 24 N -0.445 5.445 25 C 0.120 3.880 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.272 0.728 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.164 0.836 39 H 0.202 0.798 40 H 0.113 0.887 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 1.230 -4.832 6.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.024 4.024 4 C -0.013 4.013 5 N -0.138 5.138 6 C -0.462 4.462 7 H 0.103 0.897 8 C -0.150 4.150 9 N -0.497 5.497 10 Si 0.739 3.261 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.194 1.194 14 C 0.261 3.739 15 O -0.490 6.490 16 C -0.118 4.118 17 H 0.114 0.886 18 C -0.142 4.142 19 C -0.084 4.084 20 C -0.136 4.136 21 C -0.184 4.184 22 N -0.224 5.224 23 C -0.101 4.101 24 N -0.127 5.127 25 C -0.002 4.002 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.132 0.868 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.181 0.819 39 H 0.219 0.781 40 H 0.131 0.869 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.059 1.213 -4.814 5.831 hybrid contribution -1.031 -0.449 0.827 1.396 sum -4.089 0.764 -3.986 5.762 Atomic orbital electron populations 1.22649 0.83421 1.01781 0.98822 1.88162 1.17351 1.27509 1.95013 1.23013 0.96384 0.84452 0.98539 1.21508 0.89377 0.99266 0.91192 1.43332 1.55178 1.06318 1.08945 1.19186 1.44683 0.80533 1.01817 0.89679 1.25221 0.94015 0.99860 0.95865 1.69812 1.28260 1.37070 1.14521 0.86239 0.79478 0.82658 0.77748 1.19983 1.21040 1.19446 1.19975 0.81152 0.86635 0.86129 1.90537 1.58534 1.14511 1.85444 1.21236 0.95534 1.00181 0.94836 0.88636 1.21483 1.03247 0.97547 0.91923 1.20254 0.92027 0.97574 0.98561 1.21201 0.98396 1.07001 0.87046 1.21718 0.94431 1.03721 0.98531 1.70446 1.20926 1.23073 1.07972 1.24723 0.93058 0.99746 0.92584 1.45567 1.18778 1.40106 1.08208 1.21883 0.95957 1.02404 0.79934 0.94996 0.90421 0.95144 0.94191 0.94394 0.86806 0.90839 0.91804 0.90679 0.91118 0.90267 0.89791 0.81892 0.78150 0.86924 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.37 10.18 -35.23 -0.36 -7.73 16 3 C 0.05 1.05 6.28 37.16 0.23 1.29 16 4 C 0.11 2.47 5.47 -4.04 -0.02 2.44 16 5 N -0.42 -9.72 2.50 -114.81 -0.29 -10.00 16 6 C -0.33 -7.85 7.41 -14.93 -0.11 -7.96 16 7 H 0.09 1.97 6.50 -52.49 -0.34 1.63 16 8 C 0.06 1.36 4.95 -17.47 -0.09 1.27 16 9 N -0.86 -21.36 11.49 55.50 0.64 -20.72 16 10 Si 0.91 19.22 29.61 -169.99 -5.03 14.19 16 11 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 14 C 0.47 10.45 6.73 -10.99 -0.07 10.38 16 15 O -0.60 -14.59 15.79 5.55 0.09 -14.50 16 16 C -0.10 -1.77 1.81 -91.58 -0.17 -1.93 16 17 H 0.10 1.80 6.57 -51.93 -0.34 1.46 16 18 C -0.10 -1.66 4.63 -26.41 -0.12 -1.78 16 19 C -0.05 -0.62 6.31 -27.62 -0.17 -0.79 16 20 C -0.02 -0.33 6.57 -81.73 -0.54 -0.86 16 21 C -0.04 -0.57 11.84 -17.95 -0.21 -0.79 16 22 N -0.51 -8.77 11.27 -14.87 -0.17 -8.94 16 23 C 0.18 2.92 12.66 -90.71 -1.15 1.77 16 24 N -0.44 -7.38 3.13 -114.10 -0.36 -7.74 16 25 C 0.12 2.10 6.17 -3.93 -0.02 2.08 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.11 2.76 5.54 -51.93 -0.29 2.47 16 32 H 0.07 1.65 7.36 -51.93 -0.38 1.27 16 33 H 0.27 6.47 8.32 -40.82 -0.34 6.13 16 34 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 35 H 0.07 1.20 8.12 -51.93 -0.42 0.77 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 39 H 0.20 2.58 8.06 -52.49 -0.42 2.16 16 40 H 0.11 2.08 7.46 -51.93 -0.39 1.70 16 41 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 LS Contribution 336.32 15.07 5.07 5.07 Total: -1.00 -28.87 336.32 -7.69 -36.55 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.94 Total: 7.13 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -1.33 Total: 6.68 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.17 Total: -47.40 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.27 Total: -22.23 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.87 -7.69 -36.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597754956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.035 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds