Wall clock time and date at job start Tue Mar 31 2020 03:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99888 * 2 1 4 4 C 1.53006 * 109.47156 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46808 * 64.99849 * 4 3 2 6 6 C 1.37100 * 120.00000 * 270.00083 * 5 4 3 7 7 H 1.08003 * 120.00424 * 138.73016 * 6 5 4 8 8 C 1.38949 * 119.99757 * 318.72491 * 6 5 4 9 9 N 1.31407 * 120.00389 * 346.83195 * 8 6 5 10 10 Si 1.86808 * 119.99880 * 166.83460 * 8 6 5 11 11 H 1.48497 * 109.46979 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47138 * 120.00098 * 10 8 6 13 13 H 1.48496 * 109.46811 * 239.99986 * 10 8 6 14 14 C 1.34775 * 120.00173 * 90.00517 * 5 4 3 15 15 O 1.21289 * 119.99968 * 3.50827 * 14 5 4 16 16 C 1.50703 * 120.00109 * 183.51453 * 14 5 4 17 17 H 1.08999 * 115.56341 * 306.52732 * 16 14 5 18 18 C 1.53079 * 117.49348 * 160.81686 * 16 14 5 19 19 C 1.52997 * 59.98570 * 252.51449 * 18 16 14 20 20 H 1.09002 * 117.50048 * 107.50021 * 19 18 16 21 21 C 1.50696 * 117.50092 * 252.49894 * 19 18 16 22 22 C 1.34670 * 126.59046 * 35.33937 * 21 19 18 23 23 N 1.34127 * 108.01955 * 180.02562 * 22 21 19 24 24 C 1.30494 * 109.25885 * 359.97438 * 23 22 21 25 25 N 1.35043 * 108.70126 * 0.02562 * 24 23 22 26 26 C 1.46501 * 126.40047 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.47033 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47034 * 300.00118 * 1 2 3 29 29 H 1.08997 * 109.47285 * 59.99795 * 1 2 3 30 30 H 1.08999 * 109.47589 * 60.00192 * 3 2 1 31 31 H 1.09004 * 109.47053 * 299.99765 * 3 2 1 32 32 H 1.08999 * 109.46621 * 305.00030 * 4 3 2 33 33 H 1.08995 * 109.46933 * 184.99761 * 4 3 2 34 34 H 0.97001 * 120.00443 * 185.29776 * 9 8 6 35 35 H 1.08998 * 117.50915 * 145.03375 * 18 16 14 36 36 H 1.08999 * 117.49378 * 0.02562 * 18 16 14 37 37 H 1.08002 * 125.98799 * 359.75762 * 22 21 19 38 38 H 1.08005 * 125.64879 * 179.97438 * 24 23 22 39 39 H 1.08998 * 109.47236 * 270.00027 * 26 25 24 40 40 H 1.08999 * 109.46864 * 30.00304 * 26 25 24 41 41 H 1.08996 * 109.46765 * 150.00124 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0969 -0.7986 -1.3370 7 1 3.7658 -1.3164 -2.2251 8 6 4.6457 -1.5139 -0.2797 9 7 5.2808 -0.8820 0.6817 10 14 4.4809 -3.3739 -0.2250 11 1 3.7268 -3.8392 -1.4167 12 1 5.8318 -3.9906 -0.2215 13 1 3.7526 -3.7702 1.0069 14 6 4.2615 1.3337 -2.3218 15 8 4.2160 2.5422 -2.2289 16 6 4.6376 0.6924 -3.6327 17 1 5.4570 -0.0250 -3.5873 18 6 4.5136 1.5451 -4.8979 19 6 3.5132 0.4182 -4.6334 20 1 2.5013 0.7012 -4.3434 21 6 3.6232 -0.8231 -5.4807 22 6 4.7580 -1.3805 -5.9446 23 7 4.4256 -2.4685 -6.6551 24 6 3.1280 -2.6068 -6.6487 25 7 2.5888 -1.6007 -5.9271 26 6 1.1632 -1.3821 -5.6703 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1765 0.0889 34 1 5.7298 -1.3853 1.3788 35 1 5.2514 1.3887 -5.6848 36 1 4.1604 2.5697 -4.7815 37 1 5.7598 -1.0131 -5.7777 38 1 2.5766 -3.3950 -7.1399 39 1 0.7446 -0.7534 -6.4562 40 1 0.6451 -2.3410 -5.6575 41 1 1.0392 -0.8892 -4.7060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597755011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:15 Heat of formation + Delta-G solvation = 0.570624 kcal Electronic energy + Delta-G solvation = -24509.737694 eV Core-core repulsion = 21005.754655 eV Total energy + Delta-G solvation = -3503.983038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.01601 -40.74244 -38.73878 -37.45756 -36.47183 -34.86786 -33.48218 -31.11763 -30.16817 -27.76916 -27.30652 -26.72263 -25.30330 -24.27043 -22.79512 -22.23355 -20.86332 -20.44619 -18.74162 -18.22028 -17.82194 -17.11442 -16.95881 -16.53708 -16.38190 -16.09311 -15.89699 -15.56995 -15.22378 -14.79361 -14.60821 -14.42860 -13.77370 -13.67182 -13.53006 -13.40783 -13.22275 -12.96148 -12.82694 -12.70365 -12.52381 -12.46679 -12.06985 -11.86743 -11.81253 -11.36326 -11.04094 -10.92979 -10.54588 -10.43976 -10.35462 -9.37924 -9.12835 -8.22614 -6.00956 1.00372 1.38827 1.44240 1.54446 1.85966 2.00199 2.22902 2.33202 2.80423 3.01508 3.11539 3.26166 3.60859 3.87475 3.92815 4.01518 4.04329 4.15176 4.24596 4.30960 4.43819 4.44586 4.52696 4.54943 4.62335 4.64525 4.69255 4.77908 4.78736 4.83666 4.94763 5.08997 5.21244 5.38893 5.45586 5.58878 5.77319 6.06892 6.36737 6.42767 6.47308 7.14444 7.19043 7.61438 8.02908 8.80920 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.006476 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.665327 B = 4322.731649 C = 4743.801487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.068 3.932 4 C 0.104 3.896 5 N -0.433 5.433 6 C -0.310 4.310 7 H 0.081 0.919 8 C 0.010 3.990 9 N -0.901 5.901 10 Si 0.974 3.026 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.279 1.279 14 C 0.487 3.513 15 O -0.633 6.633 16 C -0.146 4.146 17 H 0.116 0.884 18 C -0.121 4.121 19 C -0.052 4.052 20 H 0.104 0.896 21 C 0.011 3.989 22 C -0.044 4.044 23 N -0.531 5.531 24 C 0.182 3.818 25 N -0.459 5.459 26 C 0.066 3.934 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.032 0.968 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.269 0.731 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.166 0.834 38 H 0.244 0.756 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 -1.967 -8.983 14.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.314 6.314 3 C -0.010 4.010 4 C -0.019 4.019 5 N -0.150 5.150 6 C -0.438 4.438 7 H 0.098 0.902 8 C -0.192 4.192 9 N -0.540 5.540 10 Si 0.800 3.200 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.205 1.205 14 C 0.277 3.723 15 O -0.522 6.522 16 C -0.168 4.168 17 H 0.134 0.866 18 C -0.158 4.158 19 C -0.072 4.072 20 H 0.122 0.878 21 C -0.104 4.104 22 C -0.191 4.191 23 N -0.250 5.250 24 C -0.100 4.100 25 N -0.141 5.141 26 C -0.075 4.075 27 H 0.111 0.889 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.140 0.860 36 H 0.120 0.880 37 H 0.184 0.816 38 H 0.260 0.740 39 H 0.115 0.885 40 H 0.133 0.867 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.581 -2.128 -9.051 14.086 hybrid contribution -0.505 -0.046 1.016 1.136 sum -11.086 -2.174 -8.035 13.863 Atomic orbital electron populations 1.22884 0.80753 1.03246 1.00276 1.88102 1.20337 1.27672 1.95277 1.22781 0.94279 0.84627 0.99304 1.21512 0.91658 0.97917 0.90839 1.43443 1.55802 1.06393 1.09329 1.19316 1.39997 0.80885 1.03588 0.90154 1.25987 0.94358 1.03302 0.95566 1.69825 1.32390 1.37275 1.14497 0.85154 0.77723 0.78941 0.78200 1.19206 1.20789 1.20467 1.20145 0.79396 0.85952 0.86836 1.90476 1.59930 1.15602 1.86177 1.21953 1.01980 1.04005 0.88820 0.86606 1.23154 1.00465 0.95497 0.96724 1.19967 0.95673 0.93102 0.98498 0.87820 1.20262 0.88635 0.97096 1.04435 1.22080 0.98434 0.95701 1.02890 1.70207 1.13353 1.19129 1.22313 1.25637 0.89974 0.94996 0.99352 1.45395 1.08375 1.21269 1.39111 1.22315 0.76169 1.05604 1.03455 0.88944 0.93200 0.93968 0.91679 0.95010 0.88334 0.92341 0.92097 0.85970 0.87952 0.81643 0.73977 0.88505 0.86656 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 11.01 113.37 1.25 1.95 16 2 O -0.39 -16.12 10.18 -148.98 -1.52 -17.64 16 3 C 0.07 2.74 6.28 71.98 0.45 3.19 16 4 C 0.10 5.08 5.44 86.38 0.47 5.55 16 5 N -0.43 -21.97 2.48 -635.54 -1.58 -23.55 16 6 C -0.31 -15.94 8.06 84.04 0.68 -15.26 16 7 H 0.08 4.15 7.41 -2.91 -0.02 4.13 16 8 C 0.01 0.49 5.13 84.93 0.44 0.93 16 9 N -0.90 -49.01 11.22 21.66 0.24 -48.77 16 10 Si 0.97 42.39 29.58 68.60 2.03 44.42 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 13 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 14 C 0.49 23.76 7.36 87.66 0.64 24.40 16 15 O -0.63 -33.27 16.00 -3.06 -0.05 -33.32 16 16 C -0.15 -5.88 4.25 -11.51 -0.05 -5.93 16 17 H 0.12 4.86 7.85 -2.39 -0.02 4.84 16 18 C -0.12 -3.89 9.57 30.62 0.29 -3.60 16 19 C -0.05 -1.74 5.72 -11.54 -0.07 -1.81 16 20 H 0.10 3.45 7.38 -2.39 -0.02 3.43 16 21 C 0.01 0.35 6.63 40.95 0.27 0.62 16 22 C -0.04 -1.48 10.94 83.52 0.91 -0.56 16 23 N -0.53 -17.44 11.25 -200.31 -2.25 -19.69 16 24 C 0.18 4.60 12.56 180.26 2.26 6.86 16 25 N -0.46 -11.82 3.15 -537.90 -1.70 -13.52 16 26 C 0.07 1.11 10.96 127.77 1.40 2.51 16 27 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.10 5.23 5.47 -2.39 -0.01 5.22 16 33 H 0.06 2.90 7.38 -2.39 -0.02 2.89 16 34 H 0.27 13.90 8.32 -92.71 -0.77 13.13 16 35 H 0.12 3.33 7.98 -2.39 -0.02 3.31 16 36 H 0.10 3.39 7.80 -2.39 -0.02 3.37 16 37 H 0.17 5.31 8.06 -2.91 -0.02 5.28 16 38 H 0.24 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.49 7.36 -2.39 -0.02 1.47 16 Total: -1.00 -70.61 349.16 5.16 -65.45 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 1.02 Total: 27.75 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 8.96 Total: 18.85 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -5.28 Total: -105.52 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -1.57 Total: -50.96 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -70.61 5.16 -65.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.023 kcal (2) G-P(sol) polarization free energy of solvation -70.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds