Wall clock time and date at job start Tue Mar 31 2020 03:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.50697 * 109.46690 * 240.00295 * 2 1 3 5 5 H 1.08002 * 119.99965 * 239.99971 * 4 2 1 6 6 C 1.37877 * 120.00490 * 59.99966 * 4 2 1 7 7 N 1.31514 * 119.99545 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00173 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47173 * 59.99901 * 8 6 4 10 10 H 1.48497 * 109.47169 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47241 * 299.99984 * 8 6 4 12 12 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 13 13 N 1.46498 * 109.47059 * 299.99645 * 12 2 1 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 2 15 15 O 1.21623 * 119.99969 * 0.28063 * 14 13 12 16 16 C 1.47314 * 120.00101 * 180.27598 * 14 13 12 17 17 N 1.30682 * 125.44287 * 0.02958 * 16 14 13 18 18 N 1.39109 * 108.45162 * 179.79339 * 17 16 14 19 19 C 1.46632 * 129.38941 * 181.23746 * 18 17 16 20 20 C 1.53676 * 107.25949 * 154.79831 * 19 18 17 21 21 C 1.52949 * 109.59857 * 52.36636 * 20 19 18 22 22 N 1.46738 * 110.51486 * 302.47167 * 21 20 19 23 23 C 1.30632 * 119.18199 * 31.65835 * 22 21 20 24 24 N 1.36265 * 129.73654 * 178.22301 * 23 22 21 25 25 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 26 26 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 27 27 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 30 30 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 31 31 H 0.97004 * 119.99855 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.47066 * 179.97438 * 12 2 1 33 33 H 1.08994 * 109.46974 * 60.00060 * 12 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 13 12 2 35 35 H 1.08997 * 109.89821 * 274.24118 * 19 18 17 36 36 H 1.08996 * 109.89684 * 35.36307 * 19 18 17 37 37 H 1.08994 * 109.45297 * 292.32438 * 20 19 18 38 38 H 1.09001 * 109.44522 * 172.40150 * 20 19 18 39 39 H 1.09000 * 109.26326 * 182.20300 * 21 20 19 40 40 H 1.08996 * 109.24021 * 62.72484 * 21 20 19 41 41 H 0.96993 * 126.08463 * 1.29195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8268 -0.4199 -5.2204 11 1 3.8074 -1.1189 -4.0078 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8728 -0.4943 3.6694 15 8 2.5721 -1.4832 3.7810 16 6 1.3769 0.1966 4.8723 17 7 0.6215 1.2629 4.8764 18 7 0.3607 1.6127 6.1973 19 6 -0.4532 2.7121 6.7255 20 6 -0.9256 2.2968 8.1276 21 6 0.2777 1.8664 8.9679 22 7 0.9965 0.7681 8.3120 23 6 1.0141 0.7078 7.0072 24 7 1.6326 -0.1853 6.1847 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9564 0.8899 31 1 0.7081 1.1609 -3.4844 32 1 3.1301 -0.7216 1.2490 33 1 1.6768 -1.7489 1.2492 34 1 0.9939 0.7579 2.3564 35 1 0.1465 3.6200 6.7897 36 1 -1.3142 2.8801 6.0786 37 1 -1.6255 1.4655 8.0435 38 1 -1.4208 3.1405 8.6083 39 1 -0.0674 1.5361 9.9476 40 1 0.9515 2.7143 9.0911 41 1 2.1595 -0.9500 6.4648 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597764537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:16 Heat of formation + Delta-G solvation = 59.481013 kcal Electronic energy + Delta-G solvation = -23489.078020 eV Core-core repulsion = 20019.942279 eV Total energy + Delta-G solvation = -3469.135741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.13151 -39.44330 -37.27628 -36.47795 -34.28864 -33.49133 -31.44565 -31.06165 -30.47875 -26.63448 -25.77205 -25.45015 -24.77689 -23.85879 -23.16146 -20.58288 -19.76864 -19.03033 -18.18831 -17.35759 -16.71529 -15.93644 -15.71301 -15.52129 -15.25106 -14.79889 -14.69056 -14.27622 -13.97232 -13.63401 -13.47546 -12.98169 -12.94430 -12.27829 -12.03833 -11.96852 -11.76859 -11.45565 -11.24677 -11.06378 -10.89633 -10.77813 -10.44760 -10.37224 -10.31761 -10.15573 -9.70310 -9.43737 -9.38496 -8.86248 -8.70902 -8.40961 -7.72868 -6.06325 -4.17146 1.10551 1.77620 2.29664 2.33736 3.16488 3.27760 3.32536 3.35581 3.67414 3.98444 4.35883 4.44122 4.50462 4.60377 4.92390 4.96009 5.16861 5.20634 5.25622 5.34831 5.46446 5.71880 5.76555 6.05940 6.18387 6.22747 6.41756 6.53557 6.78430 6.79060 6.83063 6.87226 6.95416 7.28039 7.40828 7.50283 7.64276 7.74826 7.94002 7.95777 8.06126 8.20939 8.34485 8.82905 9.49051 10.95092 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.003119 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.263701 B = 8975.265128 C = 9512.360816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.057 3.943 3 C -0.134 4.134 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.129 3.871 13 N -0.682 5.682 14 C 0.590 3.410 15 O -0.530 6.530 16 C 0.250 3.750 17 N -0.233 5.233 18 N -0.473 5.473 19 C 0.158 3.842 20 C -0.166 4.166 21 C 0.077 3.923 22 N -0.629 5.629 23 C 0.558 3.442 24 N -0.611 5.611 25 H 0.008 0.992 26 H 0.087 0.913 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.087 0.913 30 H 0.008 0.992 31 H 0.261 0.739 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.410 0.590 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.448 0.552 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.764 4.708 17.135 18.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 C -0.191 4.191 4 C -0.547 4.547 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.007 3.993 13 N -0.332 5.332 14 C 0.369 3.631 15 O -0.405 6.405 16 C -0.032 4.032 17 N -0.059 5.059 18 N -0.285 5.285 19 C 0.038 3.962 20 C -0.206 4.206 21 C -0.054 4.054 22 N -0.375 5.375 23 C 0.193 3.807 24 N -0.248 5.248 25 H 0.027 0.973 26 H 0.106 0.894 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.106 0.894 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.247 0.753 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -3.662 4.576 17.118 18.094 hybrid contribution 0.149 -0.277 -0.683 0.752 sum -3.512 4.298 16.435 17.347 Atomic orbital electron populations 1.21863 0.97579 0.99334 1.00350 1.18375 0.92965 0.92856 0.90179 1.21858 0.98698 0.98221 1.00354 1.20911 1.31826 1.12254 0.89754 0.92332 1.24871 0.94780 0.94887 0.98872 1.69792 1.36392 1.22657 1.23450 0.86614 0.79243 0.79775 0.82115 1.20257 1.21328 1.20248 1.21995 0.98746 0.96100 0.82421 1.46182 1.50871 1.31430 1.04745 1.16411 0.81526 0.83785 0.81359 1.90872 1.38252 1.25449 1.85925 1.23917 0.98388 0.93877 0.87042 1.76840 1.15532 1.12055 1.01431 1.49306 1.48666 1.29519 1.00990 1.21760 0.94124 0.86028 0.94325 1.22432 0.99912 1.03470 0.94820 1.21744 0.92948 0.92982 0.97708 1.72954 1.35801 1.28988 0.99735 1.20035 0.88354 0.84491 0.87777 1.42092 1.50884 1.29093 1.02758 0.97336 0.89429 0.95290 0.95274 0.89443 0.97317 0.92863 0.91733 0.91752 0.75256 0.90171 0.88525 0.90615 0.88676 0.89437 0.92236 0.70812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -12.79 8.01 -34.44 -0.28 -13.07 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -22.98 9.35 55.43 0.52 -22.46 16 8 Si 0.89 20.19 29.54 -169.99 -5.02 15.16 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 C 0.13 2.54 4.50 -4.04 -0.02 2.52 16 13 N -0.68 -11.61 4.95 -61.42 -0.30 -11.92 16 14 C 0.59 9.75 7.81 -12.57 -0.10 9.65 16 15 O -0.53 -9.88 17.09 5.26 0.09 -9.79 16 16 C 0.25 3.67 8.02 -153.05 -1.23 2.44 16 17 N -0.23 -3.36 12.20 32.66 0.40 -2.96 16 18 N -0.47 -6.07 4.12 -61.49 -0.25 -6.32 16 19 C 0.16 1.40 7.42 -3.62 -0.03 1.38 16 20 C -0.17 -1.24 6.12 -26.41 -0.16 -1.41 16 21 C 0.08 0.73 7.08 -3.94 -0.03 0.70 16 22 N -0.63 -8.29 11.08 -61.79 -0.68 -8.97 16 23 C 0.56 7.56 8.73 -320.85 -2.80 4.76 16 24 N -0.61 -8.13 6.22 -11.11 -0.07 -8.20 16 25 H 0.01 0.15 6.86 -51.93 -0.36 -0.21 16 26 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 30 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 31 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.41 6.70 5.82 -40.82 -0.24 6.46 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.45 5.21 8.96 -40.82 -0.37 4.84 16 LS Contribution 333.49 15.07 5.03 5.03 Total: -1.00 -28.29 333.49 -10.22 -38.52 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.72 Total: 7.33 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -4.21 Total: 4.58 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.39 Total: -60.83 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.29 -10.22 -38.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597764537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.997 kcal (2) G-P(sol) polarization free energy of solvation -28.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds