Wall clock time and date at job start Tue Mar 31 2020 03:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.50697 * 109.46690 * 240.00295 * 2 1 3 5 5 H 1.08002 * 119.99965 * 239.99971 * 4 2 1 6 6 C 1.37877 * 120.00490 * 59.99966 * 4 2 1 7 7 N 1.31514 * 119.99545 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00173 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47173 * 59.99901 * 8 6 4 10 10 H 1.48497 * 109.47169 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47241 * 299.99984 * 8 6 4 12 12 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 13 13 N 1.46498 * 109.47059 * 299.99645 * 12 2 1 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 2 15 15 O 1.21623 * 119.99969 * 0.28063 * 14 13 12 16 16 C 1.47314 * 120.00101 * 180.27598 * 14 13 12 17 17 N 1.30682 * 125.44287 * 0.02958 * 16 14 13 18 18 N 1.39109 * 108.45162 * 179.79339 * 17 16 14 19 19 C 1.46632 * 129.38941 * 181.23746 * 18 17 16 20 20 C 1.53676 * 107.25949 * 154.79831 * 19 18 17 21 21 C 1.52949 * 109.59857 * 52.36636 * 20 19 18 22 22 N 1.46738 * 110.51486 * 302.47167 * 21 20 19 23 23 C 1.30632 * 119.18199 * 31.65835 * 22 21 20 24 24 N 1.36265 * 129.73654 * 178.22301 * 23 22 21 25 25 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 26 26 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 27 27 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 30 30 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 31 31 H 0.97004 * 119.99855 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.47066 * 179.97438 * 12 2 1 33 33 H 1.08994 * 109.46974 * 60.00060 * 12 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 13 12 2 35 35 H 1.08997 * 109.89821 * 274.24118 * 19 18 17 36 36 H 1.08996 * 109.89684 * 35.36307 * 19 18 17 37 37 H 1.08994 * 109.45297 * 292.32438 * 20 19 18 38 38 H 1.09001 * 109.44522 * 172.40150 * 20 19 18 39 39 H 1.09000 * 109.26326 * 182.20300 * 21 20 19 40 40 H 1.08996 * 109.24021 * 62.72484 * 21 20 19 41 41 H 0.96993 * 126.08463 * 1.29195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8268 -0.4199 -5.2204 11 1 3.8074 -1.1189 -4.0078 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8728 -0.4943 3.6694 15 8 2.5721 -1.4832 3.7810 16 6 1.3769 0.1966 4.8723 17 7 0.6215 1.2629 4.8764 18 7 0.3607 1.6127 6.1973 19 6 -0.4532 2.7121 6.7255 20 6 -0.9256 2.2968 8.1276 21 6 0.2777 1.8664 8.9679 22 7 0.9965 0.7681 8.3120 23 6 1.0141 0.7078 7.0072 24 7 1.6326 -0.1853 6.1847 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9564 0.8899 31 1 0.7081 1.1609 -3.4844 32 1 3.1301 -0.7216 1.2490 33 1 1.6768 -1.7489 1.2492 34 1 0.9939 0.7579 2.3564 35 1 0.1465 3.6200 6.7897 36 1 -1.3142 2.8801 6.0786 37 1 -1.6255 1.4655 8.0435 38 1 -1.4208 3.1405 8.6083 39 1 -0.0674 1.5361 9.9476 40 1 0.9515 2.7143 9.0911 41 1 2.1595 -0.9500 6.4648 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597764537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:15 Heat of formation + Delta-G solvation = 42.599397 kcal Electronic energy + Delta-G solvation = -23489.810062 eV Core-core repulsion = 20019.942279 eV Total energy + Delta-G solvation = -3469.867783 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.15043 -40.80697 -38.33802 -37.93607 -35.42944 -34.93228 -32.97575 -32.00983 -31.63441 -27.96103 -27.54031 -27.23383 -25.96114 -24.89099 -24.18752 -21.81913 -20.68643 -20.68339 -19.37303 -18.55507 -17.70764 -17.66034 -16.88012 -16.67290 -16.57501 -16.40017 -15.91597 -15.32586 -14.88733 -14.76503 -14.70347 -14.56529 -14.16338 -14.01231 -13.19787 -13.08983 -12.99699 -12.78189 -12.65600 -12.61096 -12.43587 -12.23848 -12.12410 -12.05181 -11.68479 -11.46813 -11.18961 -11.18272 -10.69335 -10.38335 -10.26695 -10.13696 -8.68120 -7.99449 -6.15243 -0.06756 0.86713 1.19191 1.33210 1.47467 1.49315 1.55123 1.89695 2.42521 2.54844 3.01345 3.24917 3.58060 3.75976 3.87312 4.04157 4.19707 4.38498 4.51803 4.51856 4.54252 4.63298 4.67755 4.72681 4.95973 4.99931 5.08294 5.09839 5.11430 5.21663 5.21961 5.39040 5.52598 5.69278 5.70761 5.88017 6.16531 6.20768 6.25904 6.44579 6.52495 6.83807 6.91672 7.02881 7.52728 8.99435 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.003119 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.263701 B = 8975.265128 C = 9512.360816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.052 3.948 3 C -0.124 4.124 4 C -0.527 4.527 5 H 0.051 0.949 6 C 0.029 3.971 7 N -0.900 5.900 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.144 3.856 13 N -0.678 5.678 14 C 0.599 3.401 15 O -0.553 6.553 16 C 0.242 3.758 17 N -0.235 5.235 18 N -0.472 5.472 19 C 0.145 3.855 20 C -0.154 4.154 21 C 0.067 3.933 22 N -0.648 5.648 23 C 0.544 3.456 24 N -0.609 5.609 25 H 0.033 0.967 26 H 0.062 0.938 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.260 0.740 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.415 0.585 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.452 0.548 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 5.644 18.583 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.051 3.949 3 C -0.182 4.182 4 C -0.566 4.566 5 H 0.070 0.930 6 C -0.171 4.171 7 N -0.539 5.539 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.021 3.979 13 N -0.329 5.329 14 C 0.380 3.620 15 O -0.429 6.429 16 C -0.040 4.040 17 N -0.061 5.061 18 N -0.285 5.285 19 C 0.026 3.974 20 C -0.194 4.194 21 C -0.063 4.063 22 N -0.394 5.394 23 C 0.180 3.820 24 N -0.247 5.247 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.084 0.916 38 H 0.150 0.850 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -4.347 5.529 18.600 19.885 hybrid contribution 0.332 -0.517 -1.007 1.180 sum -4.015 5.012 17.592 18.728 Atomic orbital electron populations 1.21709 0.97219 0.98919 1.00329 1.18364 0.93211 0.93019 0.90279 1.21705 0.98222 0.97927 1.00331 1.21243 1.31785 1.12317 0.91239 0.93043 1.25445 0.95145 0.95549 1.00999 1.69910 1.36965 1.23355 1.23634 0.85826 0.78648 0.78806 0.79566 1.20196 1.21213 1.20187 1.21589 0.98154 0.95578 0.82545 1.45942 1.51157 1.31506 1.04326 1.16436 0.80729 0.83273 0.81576 1.90859 1.39191 1.26498 1.86352 1.23314 0.99495 0.94439 0.86793 1.76766 1.14904 1.11618 1.02782 1.49719 1.48639 1.30017 1.00088 1.22209 0.94504 0.85538 0.95129 1.22390 0.98759 1.04472 0.93777 1.21941 0.93776 0.92354 0.98207 1.72910 1.36189 1.30571 0.99685 1.20148 0.88918 0.84844 0.88095 1.42091 1.50977 1.29372 1.02294 0.94787 0.91898 0.95844 0.95834 0.91911 0.94774 0.93092 0.92460 0.92475 0.74659 0.88624 0.87191 0.91626 0.84998 0.88367 0.91386 0.70336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.08 71.99 0.58 -4.74 16 2 C 0.05 2.28 0.50 -52.93 -0.03 2.26 16 3 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 4 C -0.53 -26.62 8.01 25.60 0.21 -26.41 16 5 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 6 C 0.03 1.46 5.15 84.65 0.44 1.89 16 7 N -0.90 -47.01 9.35 21.45 0.20 -46.81 16 8 Si 0.94 41.45 29.54 68.60 2.03 43.48 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 C 0.14 5.62 4.50 86.38 0.39 6.00 16 13 N -0.68 -22.43 4.95 -466.49 -2.31 -24.74 16 14 C 0.60 19.35 7.81 86.63 0.68 20.03 16 15 O -0.55 -20.43 17.09 -4.10 -0.07 -20.50 16 16 C 0.24 6.84 8.02 135.72 1.09 7.93 16 17 N -0.23 -6.36 12.20 -50.58 -0.62 -6.97 16 18 N -0.47 -11.16 4.12 -348.45 -1.43 -12.60 16 19 C 0.15 2.15 7.42 86.58 0.64 2.79 16 20 C -0.15 -1.82 6.12 30.80 0.19 -1.63 16 21 C 0.07 1.11 7.08 86.32 0.61 1.72 16 22 N -0.65 -16.05 11.08 -349.41 -3.87 -19.92 16 23 C 0.54 13.99 8.73 260.80 2.28 16.27 16 24 N -0.61 -15.72 6.22 -189.07 -1.18 -16.89 16 25 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 26 H 0.06 3.04 6.07 -2.39 -0.01 3.02 16 27 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 30 H 0.03 1.25 6.86 -2.39 -0.02 1.23 16 31 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 32 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.42 12.88 5.82 -92.71 -0.54 12.34 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 41 H 0.45 10.36 8.96 -92.71 -0.83 9.53 16 Total: -1.00 -59.84 333.49 0.10 -59.74 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -0.30 Total: 23.85 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 7.65 Total: 21.36 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -9.21 Total: -127.93 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.07 Total: -20.50 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -59.84 0.10 -59.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597764537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.344 kcal (2) G-P(sol) polarization free energy of solvation -59.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds