Wall clock time and date at job start Tue Mar 31 2020 03:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86799 * 119.99858 * 2 1 4 4 H 1.48501 * 109.47065 * 240.00003 * 3 2 1 5 5 H 1.48500 * 109.47495 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46898 * 120.00364 * 3 2 1 7 7 C 1.38952 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99718 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99634 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00210 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99479 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46496 * 179.97438 * 12 10 9 14 14 C 1.46954 * 110.99752 * 169.99951 * 13 12 10 15 15 C 1.53056 * 109.36505 * 183.18536 * 14 13 12 16 16 N 1.46951 * 109.36472 * 301.60098 * 15 14 13 17 17 C 1.46902 * 110.99682 * 183.18701 * 16 15 14 18 18 C 1.50703 * 109.46870 * 169.99895 * 17 16 15 19 19 C 1.39875 * 126.04085 * 90.02443 * 18 17 16 20 20 N 1.30829 * 108.20298 * 179.73658 * 19 18 17 21 21 N 1.40087 * 108.20855 * 359.97438 * 20 19 18 22 22 H 0.96996 * 126.03795 * 179.97438 * 21 20 19 23 23 C 1.34946 * 107.92254 * 0.02562 * 21 20 19 24 24 C 1.46954 * 110.88177 * 59.31883 * 16 15 14 25 25 C 1.46958 * 110.99952 * 293.79571 * 13 12 10 26 26 H 0.97003 * 119.99752 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00525 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.47205 * 60.00417 * 12 10 9 29 29 H 1.08995 * 109.47090 * 299.99173 * 12 10 9 30 30 H 1.08999 * 109.48942 * 63.21884 * 14 13 12 31 31 H 1.09005 * 109.49208 * 303.15163 * 14 13 12 32 32 H 1.08996 * 109.48968 * 181.62704 * 15 14 13 33 33 H 1.09004 * 109.48287 * 61.56815 * 15 14 13 34 34 H 1.08997 * 109.47529 * 50.00084 * 17 16 15 35 35 H 1.08999 * 109.47098 * 289.99307 * 17 16 15 36 36 H 1.08004 * 125.89555 * 359.71602 * 19 18 17 37 37 H 1.07999 * 126.12479 * 180.02562 * 23 21 20 38 38 H 1.08999 * 109.48942 * 60.64750 * 24 16 15 39 39 H 1.09006 * 109.48943 * 180.70989 * 24 16 15 40 40 H 1.08996 * 109.49179 * 296.78098 * 25 13 12 41 41 H 1.09000 * 109.48705 * 56.84828 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1983 -5.9795 -0.0016 14 6 1.5136 -7.2578 0.2361 15 6 2.5491 -8.3827 0.3071 16 7 3.3121 -8.4226 -0.9481 17 6 4.2667 -9.5392 -0.9486 18 6 4.8507 -9.7002 -2.3285 19 6 6.0047 -9.0749 -2.8118 20 7 6.1946 -9.4650 -4.0461 21 7 5.1662 -10.3528 -4.3877 22 1 5.0562 -10.7969 -5.2430 23 6 4.3548 -10.4801 -3.3169 24 6 3.9968 -7.1443 -1.1858 25 6 2.9613 -6.0195 -1.2570 26 1 -0.4850 0.8401 0.0004 27 1 0.3534 -2.3906 -0.0005 28 1 0.6174 -4.9205 -0.8914 29 1 0.6168 -4.9209 0.8886 30 1 0.8180 -7.4550 -0.5796 31 1 0.9660 -7.2077 1.1773 32 1 2.0412 -9.3357 0.4546 33 1 3.2282 -8.1996 1.1399 34 1 3.7527 -10.4568 -0.6623 35 1 5.0666 -9.3337 -0.2373 36 1 6.6308 -8.3882 -2.2613 37 1 3.4687 -11.0948 -3.2590 38 1 4.6924 -6.9472 -0.3701 39 1 4.5445 -7.1945 -2.1270 40 1 2.2822 -6.2025 -2.0896 41 1 3.4692 -5.0664 -1.4043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599439407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:29 Heat of formation + Delta-G solvation = 60.504872 kcal Electronic energy + Delta-G solvation = -23239.378449 eV Core-core repulsion = 19770.287105 eV Total energy + Delta-G solvation = -3469.091343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35269 -39.23124 -37.81237 -35.24442 -33.79083 -31.82273 -31.25574 -31.00979 -30.58249 -28.38845 -25.90623 -24.31377 -23.46591 -22.90506 -21.98842 -20.17280 -19.54171 -19.12450 -17.92177 -17.81269 -16.19366 -15.82555 -15.10217 -14.85501 -14.68637 -14.61752 -14.57440 -14.42536 -14.05834 -13.68331 -13.53953 -13.29638 -13.02864 -12.68234 -12.26295 -11.89064 -11.73435 -11.46579 -11.35376 -11.04142 -11.00252 -10.78541 -10.57801 -10.47990 -10.40475 -10.17486 -9.79493 -9.42585 -8.75909 -8.41455 -8.19931 -7.93129 -7.75609 -6.37973 -3.78561 1.73732 2.57045 2.73627 3.22787 3.28085 3.32631 3.95238 4.06536 4.13329 4.30278 4.57746 4.73009 5.03267 5.07750 5.14461 5.19288 5.28412 5.34949 5.42608 5.52938 5.56590 5.66349 5.68152 5.79786 5.87660 5.93345 5.99169 6.01919 6.10163 6.30690 6.36015 6.43564 6.52111 7.06865 7.07821 7.12965 7.40658 7.47606 7.51740 7.58749 8.10563 8.66396 9.22107 9.59056 10.11254 10.79849 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025394 B = 0.002982 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.360758 B = 9386.759563 C =10082.978070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.445 3.555 11 O -0.578 6.578 12 C 0.047 3.953 13 N -0.517 5.517 14 C 0.056 3.944 15 C 0.060 3.940 16 N -0.538 5.538 17 C 0.132 3.868 18 C -0.227 4.227 19 C 0.059 3.941 20 N -0.298 5.298 21 N -0.482 5.482 22 H 0.438 0.562 23 C 0.075 3.925 24 C 0.063 3.937 25 C 0.056 3.944 26 H 0.271 0.729 27 H 0.392 0.608 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.181 0.819 37 H 0.175 0.825 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.028 0.972 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.941 -21.722 -3.782 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.462 6.462 12 C -0.085 4.085 13 N -0.242 5.242 14 C -0.072 4.072 15 C -0.068 4.068 16 N -0.264 5.264 17 C 0.003 3.997 18 C -0.239 4.239 19 C -0.128 4.128 20 N -0.120 5.120 21 N -0.189 5.189 22 H 0.281 0.719 23 C -0.074 4.074 24 C -0.065 4.065 25 C -0.072 4.072 26 H 0.081 0.919 27 H 0.225 0.775 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.198 0.802 37 H 0.192 0.808 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.046 0.954 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.370 -21.442 -4.788 22.401 hybrid contribution -0.986 0.602 0.278 1.188 sum 3.384 -20.841 -4.510 21.590 Atomic orbital electron populations 1.69611 1.05925 1.28188 1.50752 1.25252 0.95621 0.99674 0.97417 0.85928 0.78757 0.80530 0.79059 1.19931 1.21023 1.19912 1.19646 0.93323 0.82255 1.47542 0.87987 1.41864 1.09174 1.04584 1.64577 1.19767 0.88407 0.84558 0.84232 1.90476 1.13726 1.86911 1.55064 1.21832 0.93969 0.91244 1.01435 1.61759 1.25255 1.01446 1.35709 1.22160 0.95228 0.89103 1.00722 1.22109 0.96015 0.98062 0.90610 1.62250 1.26292 1.03629 1.34194 1.20253 0.93675 0.94369 0.91366 1.19968 0.99604 1.05815 0.98545 1.23872 0.97212 0.99398 0.92344 1.77340 1.09844 1.08998 1.15852 1.46300 1.21063 1.37783 1.13795 0.71903 1.22347 0.96579 1.00850 0.87584 1.22143 0.95766 0.87622 1.00919 1.22317 0.95724 1.00062 0.89071 0.91875 0.77512 0.93525 0.89432 0.94494 0.90546 0.90698 0.93928 0.90496 0.93996 0.80210 0.80793 0.93870 0.90559 0.95401 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 2 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 3 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.57 -14.48 5.29 -10.96 -0.06 -14.54 16 10 C 0.44 10.62 7.48 -10.98 -0.08 10.54 16 11 O -0.58 -15.62 13.91 5.55 0.08 -15.54 16 12 C 0.05 0.86 5.45 -4.97 -0.03 0.83 16 13 N -0.52 -8.90 4.45 -235.90 -1.05 -9.95 16 14 C 0.06 0.75 5.61 -3.77 -0.02 0.73 16 15 C 0.06 0.70 5.61 -3.77 -0.02 0.68 16 16 N -0.54 -6.51 4.70 -235.91 -1.11 -7.62 16 17 C 0.13 1.29 5.45 -4.97 -0.03 1.26 16 18 C -0.23 -2.29 4.96 -105.05 -0.52 -2.81 16 19 C 0.06 0.65 10.55 -17.37 -0.18 0.47 16 20 N -0.30 -3.53 12.70 30.63 0.39 -3.14 16 21 N -0.48 -4.21 7.36 30.44 0.22 -3.98 16 22 H 0.44 2.39 8.96 -182.61 -1.64 0.76 16 23 C 0.07 0.62 11.90 -17.22 -0.21 0.42 16 24 C 0.06 0.91 5.38 -3.77 -0.02 0.89 16 25 C 0.06 0.97 5.26 -3.76 -0.02 0.95 16 26 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 28 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 29 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 35 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.18 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.07 6.15 -51.93 -0.32 0.75 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.11 2.17 5.85 -51.93 -0.30 1.87 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -33.28 336.59 -9.27 -42.55 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -7.14 Total: 9.07 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -1.37 Total: 5.93 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.88 Total: -63.31 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.08 Total: -15.54 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.28 -9.27 -42.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599439407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.054 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds