Wall clock time and date at job start Tue Mar 31 2020 03:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86799 * 119.99858 * 2 1 4 4 H 1.48501 * 109.47065 * 240.00003 * 3 2 1 5 5 H 1.48500 * 109.47495 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46898 * 120.00364 * 3 2 1 7 7 C 1.38952 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99718 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99634 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00210 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99479 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46496 * 179.97438 * 12 10 9 14 14 C 1.46954 * 110.99752 * 169.99951 * 13 12 10 15 15 C 1.53056 * 109.36505 * 183.18536 * 14 13 12 16 16 N 1.46951 * 109.36472 * 301.60098 * 15 14 13 17 17 C 1.46902 * 110.99682 * 183.18701 * 16 15 14 18 18 C 1.50703 * 109.46870 * 169.99895 * 17 16 15 19 19 C 1.39875 * 126.04085 * 90.02443 * 18 17 16 20 20 N 1.30829 * 108.20298 * 179.73658 * 19 18 17 21 21 N 1.40087 * 108.20855 * 359.97438 * 20 19 18 22 22 H 0.96996 * 126.03795 * 179.97438 * 21 20 19 23 23 C 1.34946 * 107.92254 * 0.02562 * 21 20 19 24 24 C 1.46954 * 110.88177 * 59.31883 * 16 15 14 25 25 C 1.46958 * 110.99952 * 293.79571 * 13 12 10 26 26 H 0.97003 * 119.99752 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00525 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.47205 * 60.00417 * 12 10 9 29 29 H 1.08995 * 109.47090 * 299.99173 * 12 10 9 30 30 H 1.08999 * 109.48942 * 63.21884 * 14 13 12 31 31 H 1.09005 * 109.49208 * 303.15163 * 14 13 12 32 32 H 1.08996 * 109.48968 * 181.62704 * 15 14 13 33 33 H 1.09004 * 109.48287 * 61.56815 * 15 14 13 34 34 H 1.08997 * 109.47529 * 50.00084 * 17 16 15 35 35 H 1.08999 * 109.47098 * 289.99307 * 17 16 15 36 36 H 1.08004 * 125.89555 * 359.71602 * 19 18 17 37 37 H 1.07999 * 126.12479 * 180.02562 * 23 21 20 38 38 H 1.08999 * 109.48942 * 60.64750 * 24 16 15 39 39 H 1.09006 * 109.48943 * 180.70989 * 24 16 15 40 40 H 1.08996 * 109.49179 * 296.78098 * 25 13 12 41 41 H 1.09000 * 109.48705 * 56.84828 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1983 -5.9795 -0.0016 14 6 1.5136 -7.2578 0.2361 15 6 2.5491 -8.3827 0.3071 16 7 3.3121 -8.4226 -0.9481 17 6 4.2667 -9.5392 -0.9486 18 6 4.8507 -9.7002 -2.3285 19 6 6.0047 -9.0749 -2.8118 20 7 6.1946 -9.4650 -4.0461 21 7 5.1662 -10.3528 -4.3877 22 1 5.0562 -10.7969 -5.2430 23 6 4.3548 -10.4801 -3.3169 24 6 3.9968 -7.1443 -1.1858 25 6 2.9613 -6.0195 -1.2570 26 1 -0.4850 0.8401 0.0004 27 1 0.3534 -2.3906 -0.0005 28 1 0.6174 -4.9205 -0.8914 29 1 0.6168 -4.9209 0.8886 30 1 0.8180 -7.4550 -0.5796 31 1 0.9660 -7.2077 1.1773 32 1 2.0412 -9.3357 0.4546 33 1 3.2282 -8.1996 1.1399 34 1 3.7527 -10.4568 -0.6623 35 1 5.0666 -9.3337 -0.2373 36 1 6.6308 -8.3882 -2.2613 37 1 3.4687 -11.0948 -3.2590 38 1 4.6924 -6.9472 -0.3701 39 1 4.5445 -7.1945 -2.1270 40 1 2.2822 -6.2025 -2.0896 41 1 3.4692 -5.0664 -1.4043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599439407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:28 Heat of formation + Delta-G solvation = 33.315422 kcal Electronic energy + Delta-G solvation = -23240.557472 eV Core-core repulsion = 19770.287105 eV Total energy + Delta-G solvation = -3470.270366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.08551 -40.64671 -39.39784 -36.52503 -35.74684 -33.27969 -32.62795 -31.89417 -31.73059 -29.65729 -27.36325 -25.84030 -24.57204 -24.07798 -22.80109 -21.05902 -20.92521 -20.59073 -19.85757 -18.62734 -17.76492 -17.13390 -16.58317 -16.34574 -15.97367 -15.82910 -15.56897 -15.39947 -15.31224 -15.24239 -14.91637 -14.62715 -13.96713 -13.82781 -13.53617 -13.47789 -13.10324 -12.81491 -12.80559 -12.46510 -12.42440 -12.17095 -12.11031 -11.90451 -11.75702 -11.43589 -11.37034 -10.55568 -10.25000 -9.98669 -9.52293 -9.24326 -9.08321 -8.45187 -5.93684 1.04145 1.40159 1.41567 1.52597 1.78926 2.07424 2.13001 2.29449 2.81000 3.19464 3.21809 3.41787 3.84988 3.99103 4.11445 4.21281 4.24656 4.35608 4.38829 4.40320 4.52192 4.58609 4.60819 4.70723 4.72272 4.82444 4.89235 4.95843 5.00190 5.10408 5.17924 5.27527 5.41846 5.68446 5.88253 6.05978 6.08226 6.28937 6.31106 6.50704 6.62776 6.75381 7.14583 7.58438 8.14709 8.72170 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025394 B = 0.002982 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.360758 B = 9386.759563 C =10082.978070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.614 6.614 12 C 0.059 3.941 13 N -0.535 5.535 14 C 0.055 3.945 15 C 0.062 3.938 16 N -0.537 5.537 17 C 0.136 3.864 18 C -0.249 4.249 19 C 0.045 3.955 20 N -0.337 5.337 21 N -0.474 5.474 22 H 0.451 0.549 23 C 0.091 3.909 24 C 0.078 3.922 25 C 0.062 3.938 26 H 0.277 0.723 27 H 0.396 0.604 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.033 0.967 34 H 0.105 0.895 35 H 0.037 0.963 36 H 0.180 0.820 37 H 0.212 0.788 38 H 0.025 0.975 39 H 0.075 0.925 40 H 0.028 0.972 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 -23.622 -3.641 23.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.213 5.213 10 C 0.229 3.771 11 O -0.500 6.500 12 C -0.073 4.073 13 N -0.260 5.260 14 C -0.072 4.072 15 C -0.066 4.066 16 N -0.262 5.262 17 C 0.009 3.991 18 C -0.261 4.261 19 C -0.142 4.142 20 N -0.160 5.160 21 N -0.184 5.184 22 H 0.297 0.703 23 C -0.058 4.058 24 C -0.051 4.051 25 C -0.067 4.067 26 H 0.087 0.913 27 H 0.229 0.771 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.051 0.949 34 H 0.123 0.877 35 H 0.055 0.945 36 H 0.197 0.803 37 H 0.229 0.771 38 H 0.044 0.956 39 H 0.094 0.906 40 H 0.046 0.954 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.987 -23.374 -4.658 24.020 hybrid contribution -0.567 1.100 0.210 1.255 sum 2.419 -22.274 -4.448 22.843 Atomic orbital electron populations 1.69672 1.06809 1.29305 1.50479 1.26025 0.96541 1.02350 0.96359 0.85006 0.77775 0.76733 0.78925 1.19782 1.19434 1.19709 1.19616 0.92664 0.84044 1.49872 0.90388 1.41932 1.09278 1.04685 1.65368 1.20801 0.88314 0.85941 0.82053 1.90458 1.15725 1.87763 1.56080 1.21714 0.93633 0.88633 1.03278 1.61740 1.25821 1.02933 1.35529 1.22318 0.95765 0.87360 1.01781 1.22193 0.95532 0.99014 0.89872 1.62271 1.26569 1.02784 1.34616 1.20301 0.93352 0.94292 0.91201 1.20107 0.99737 1.06854 0.99353 1.24044 0.97997 0.99676 0.92447 1.77274 1.11675 1.10654 1.16444 1.46356 1.20342 1.36992 1.14670 0.70333 1.22906 0.96722 0.99752 0.86466 1.21881 0.94591 0.88334 1.00288 1.22119 0.96101 0.99037 0.89400 0.91322 0.77057 0.91950 0.86953 0.93769 0.88795 0.87072 0.94897 0.87682 0.94452 0.80261 0.77112 0.95625 0.90631 0.95411 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.44 13.05 21.66 0.28 -50.16 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 3 Si 0.99 43.64 29.55 68.60 2.03 45.66 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.33 -19.22 9.68 84.04 0.81 -18.40 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.58 -30.17 5.29 -306.98 -1.62 -31.79 16 10 C 0.44 21.59 7.48 87.66 0.66 22.24 16 11 O -0.61 -34.66 13.91 -3.07 -0.04 -34.70 16 12 C 0.06 2.11 5.45 85.56 0.47 2.57 16 13 N -0.53 -18.02 4.45 -900.26 -4.00 -22.02 16 14 C 0.06 1.32 5.61 86.31 0.48 1.80 16 15 C 0.06 1.24 5.61 86.31 0.48 1.72 16 16 N -0.54 -11.82 4.70 -900.27 -4.23 -16.05 16 17 C 0.14 2.32 5.45 85.56 0.47 2.78 16 18 C -0.25 -4.56 4.96 -20.14 -0.10 -4.66 16 19 C 0.04 0.99 10.55 85.24 0.90 1.89 16 20 N -0.34 -7.90 12.70 -57.02 -0.72 -8.62 16 21 N -0.47 -7.47 7.36 -57.59 -0.42 -7.89 16 22 H 0.45 4.09 8.96 -213.33 -1.91 2.18 16 23 C 0.09 1.25 11.90 83.54 0.99 2.24 16 24 C 0.08 2.24 5.38 86.31 0.46 2.71 16 25 C 0.06 2.17 5.26 86.31 0.45 2.62 16 26 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 28 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 29 H 0.11 3.49 8.03 -2.39 -0.02 3.47 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.92 8.07 -2.38 -0.02 1.91 16 32 H 0.11 1.49 8.07 -2.39 -0.02 1.47 16 33 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.10 1.23 8.03 -2.39 -0.02 1.21 16 35 H 0.04 0.68 8.12 -2.39 -0.02 0.66 16 36 H 0.18 3.67 8.06 -2.91 -0.02 3.64 16 37 H 0.21 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 2.17 6.15 -2.38 -0.01 2.16 16 40 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 2.68 5.85 -2.39 -0.01 2.67 16 Total: -1.00 -74.01 336.59 -3.77 -77.78 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: -1.58 Total: 30.53 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 6.55 Total: 17.27 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -10.72 Total: -136.54 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.04 Total: -34.70 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -74.01 -3.77 -77.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599439407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.094 kcal (2) G-P(sol) polarization free energy of solvation -74.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds