Wall clock time and date at job start Tue Mar 31 2020 03:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42908 * 109.46772 * 2 1 4 4 C 1.42896 * 113.99764 * 175.53970 * 3 2 1 5 5 H 1.09003 * 109.47230 * 23.22339 * 4 3 2 6 6 C 1.50707 * 109.47143 * 143.22245 * 4 3 2 7 7 O 1.21592 * 119.99662 * 4.99908 * 6 4 3 8 8 N 1.32912 * 119.99783 * 185.27479 * 6 4 3 9 9 C 1.33299 * 119.99456 * 179.72845 * 8 6 4 10 10 C 1.40981 * 126.36234 * 0.02562 * 9 8 6 11 11 C 1.35123 * 108.24369 * 179.97438 * 10 9 8 12 12 N 1.36332 * 108.89980 * 359.97438 * 11 10 9 13 13 C 1.46500 * 125.86755 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46946 * 84.97798 * 13 12 11 15 15 H 1.08000 * 119.99615 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00094 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00154 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00075 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47381 * 60.00209 * 18 16 14 20 20 H 1.48505 * 109.47182 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46982 * 299.99976 * 18 16 14 22 22 N 1.37286 * 126.35511 * 179.71479 * 9 8 6 23 23 H 0.96994 * 126.35036 * 359.97438 * 22 9 8 24 24 C 1.52997 * 109.47208 * 263.22134 * 4 3 2 25 25 C 1.53004 * 117.49883 * 11.60717 * 24 4 3 26 26 C 1.52997 * 117.50071 * 302.94506 * 24 4 3 27 27 H 1.08995 * 109.47813 * 59.99896 * 1 2 3 28 28 H 1.09004 * 109.47138 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47142 * 299.99728 * 1 2 3 30 30 H 1.08995 * 109.47010 * 240.00552 * 2 1 3 31 31 H 1.08995 * 109.47813 * 120.00104 * 2 1 3 32 32 H 1.08001 * 125.87618 * 359.95662 * 10 9 8 33 33 H 1.08002 * 125.55268 * 179.97438 * 11 10 9 34 34 H 1.08997 * 109.47400 * 204.97903 * 13 12 11 35 35 H 1.08998 * 109.47250 * 324.98038 * 13 12 11 36 36 H 0.96993 * 120.00586 * 179.97438 * 17 16 14 37 37 H 1.09005 * 115.55102 * 157.27312 * 24 4 3 38 38 H 1.09007 * 117.49438 * 359.97438 * 25 24 4 39 39 H 1.08994 * 117.50156 * 145.02048 * 25 24 4 40 40 H 1.09002 * 117.50484 * 214.97513 * 26 24 4 41 41 H 1.08998 * 117.49513 * 0.02562 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4270 1.4616 0.1015 5 1 3.8915 0.5390 -0.2468 6 6 3.9003 2.6137 -0.7469 7 8 3.0917 3.3297 -1.3054 8 7 5.2016 2.8437 -0.8890 9 6 5.6203 3.8595 -1.6438 10 6 4.8052 4.7693 -2.3477 11 6 5.6074 5.6473 -2.9891 12 7 6.9071 5.3344 -2.7220 13 6 8.0830 6.0464 -3.2287 14 6 8.3843 7.2200 -2.3327 15 1 7.7624 7.4156 -1.4716 16 6 9.4545 8.0433 -2.6115 17 7 10.2121 7.8048 -3.6597 18 14 9.8284 9.4976 -1.5003 19 1 10.0988 9.0119 -0.1233 20 1 11.0203 10.2195 -2.0140 21 1 8.6632 10.4181 -1.4807 22 7 6.9252 4.2176 -1.8753 23 1 7.7136 3.7785 -1.5197 24 6 3.8158 1.7091 1.5604 25 6 2.7316 1.5174 2.6228 26 6 3.2052 2.9265 2.2575 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.7254 4.7650 -2.3705 33 1 5.2733 6.4640 -3.6119 34 1 8.9384 5.3712 -3.2431 35 1 7.8843 6.4027 -4.2395 36 1 10.9648 8.3842 -3.8561 37 1 4.8365 1.4353 1.8279 38 1 1.7411 1.2153 2.2822 39 1 3.0389 1.1180 3.5892 40 1 3.8239 3.4535 2.9839 41 1 2.5261 3.5508 1.6768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599532801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:07 Heat of formation + Delta-G solvation = 45.214136 kcal Electronic energy + Delta-G solvation = -23086.621751 eV Core-core repulsion = 19584.574600 eV Total energy + Delta-G solvation = -3502.047151 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.88868 -39.42419 -37.51662 -35.83047 -34.24608 -32.93762 -31.37361 -31.10138 -30.73233 -28.04577 -26.45613 -23.35099 -22.93740 -22.19226 -21.84008 -21.31976 -20.69137 -18.95595 -17.12862 -16.80503 -16.72683 -16.30389 -15.50345 -15.12642 -14.96485 -14.78517 -14.68298 -14.22570 -14.01769 -13.36545 -13.15247 -12.81072 -12.58918 -12.55708 -12.32144 -12.12606 -11.97743 -11.46416 -11.31089 -11.20843 -11.07879 -11.04613 -10.56605 -10.42597 -10.30026 -10.19880 -9.61023 -9.55904 -9.06730 -9.04714 -8.94072 -8.26707 -7.00253 -6.52854 -4.68913 1.62617 2.02074 2.96888 3.05969 3.11634 3.15047 3.60553 3.90330 4.03855 4.31070 4.32700 4.78495 4.85540 4.93185 5.05541 5.11974 5.21335 5.21691 5.30766 5.36734 5.53319 5.65192 5.71781 5.79957 5.82846 5.88214 5.94679 6.05641 6.07711 6.30965 6.39939 6.39953 6.47739 6.51515 6.72844 7.30339 7.34906 7.44964 7.48329 7.61374 7.93142 8.30917 8.40398 9.01973 9.37905 10.49794 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.003004 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.006010 B = 9317.433080 C = 9807.676211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.127 3.873 5 H 0.082 0.918 6 C 0.500 3.500 7 O -0.568 6.568 8 N -0.697 5.697 9 C 0.471 3.529 10 C -0.333 4.333 11 C 0.163 3.837 12 N -0.339 5.339 13 C 0.254 3.746 14 C -0.560 4.560 15 H 0.070 0.930 16 C 0.071 3.929 17 N -0.887 5.887 18 Si 0.910 3.090 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.271 1.271 22 N -0.465 5.465 23 H 0.445 0.555 24 C -0.158 4.158 25 C -0.177 4.177 26 C -0.166 4.166 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.184 0.816 33 H 0.189 0.811 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.273 0.727 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 -10.951 5.214 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.066 3.934 5 H 0.100 0.900 6 C 0.284 3.716 7 O -0.448 6.448 8 N -0.463 5.463 9 C 0.222 3.778 10 C -0.365 4.365 11 C 0.017 3.983 12 N -0.124 5.124 13 C 0.137 3.863 14 C -0.598 4.598 15 H 0.088 0.912 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.737 3.263 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.196 1.196 22 N -0.187 5.187 23 H 0.292 0.708 24 C -0.176 4.176 25 C -0.214 4.214 26 C -0.203 4.203 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.201 0.799 33 H 0.206 0.794 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.133 0.867 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.325 -10.798 5.135 15.163 hybrid contribution 0.625 0.768 0.480 1.100 sum -8.700 -10.030 5.615 14.416 Atomic orbital electron populations 1.21718 0.93920 1.01797 1.03198 1.22546 0.95480 0.84436 0.99873 1.87999 1.20026 1.25434 1.94282 1.20938 0.81511 0.98043 0.92947 0.90047 1.20347 0.85136 0.85213 0.80877 1.90539 1.59272 1.47846 1.47152 1.68578 1.18326 1.25462 1.33940 1.19151 0.82228 0.89219 0.87237 1.22478 1.02440 1.01345 1.10230 1.22896 0.81895 0.97465 0.96029 1.48072 1.08745 1.18482 1.37137 1.20090 0.79350 0.91037 0.95782 1.21365 1.14593 1.11274 1.12568 0.91232 1.24951 0.94996 0.98067 0.95439 1.69883 1.17422 1.38848 1.26144 0.86336 0.78166 0.81390 0.80446 1.19825 1.20774 1.19635 1.44565 1.07917 1.22818 1.43427 0.70753 1.22550 0.98382 1.04619 0.92074 1.22960 0.99462 1.00523 0.98424 1.22835 1.03535 0.90933 1.03028 0.91752 0.91409 0.92001 0.93635 0.93323 0.79933 0.79417 0.92992 0.91273 0.91737 0.86728 0.88287 0.89366 0.89271 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.05 0.62 5.64 37.16 0.21 0.83 16 3 O -0.36 -5.70 8.23 -55.06 -0.45 -6.15 16 4 C 0.13 2.04 3.05 -27.88 -0.08 1.96 16 5 H 0.08 1.19 7.74 -51.93 -0.40 0.78 16 6 C 0.50 9.93 6.78 -11.81 -0.08 9.85 16 7 O -0.57 -12.71 13.41 -14.55 -0.20 -12.90 16 8 N -0.70 -13.69 10.47 -11.59 -0.12 -13.81 16 9 C 0.47 9.11 8.07 -155.19 -1.25 7.86 16 10 C -0.33 -6.23 9.51 -39.65 -0.38 -6.60 16 11 C 0.16 2.74 11.46 -16.66 -0.19 2.55 16 12 N -0.34 -6.21 3.63 -62.23 -0.23 -6.44 16 13 C 0.25 5.20 6.19 -5.19 -0.03 5.17 16 14 C -0.56 -13.18 9.39 -34.44 -0.32 -13.50 16 15 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -22.32 13.29 55.43 0.74 -21.58 16 18 Si 0.91 19.15 29.54 -169.99 -5.02 14.13 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 N -0.47 -8.21 7.37 31.32 0.23 -7.98 16 23 H 0.45 6.89 8.96 -182.55 -1.64 5.25 16 24 C -0.16 -2.24 5.77 -90.62 -0.52 -2.77 16 25 C -0.18 -2.15 9.54 -26.69 -0.25 -2.41 16 26 C -0.17 -2.41 9.85 -26.69 -0.26 -2.67 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.49 7.57 -51.93 -0.39 0.10 16 32 H 0.18 3.63 5.77 -52.49 -0.30 3.33 16 33 H 0.19 2.48 8.06 -52.49 -0.42 2.05 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.27 6.56 8.31 -40.82 -0.34 6.23 16 37 H 0.11 1.55 8.14 -51.93 -0.42 1.12 16 38 H 0.10 1.21 6.25 -51.92 -0.32 0.89 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -29.15 350.15 -9.91 -39.07 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.25 Total: 9.58 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -2.89 Total: 0.82 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.62 Total: -49.81 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.65 Total: -19.06 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.15 -9.91 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599532801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.280 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds