Wall clock time and date at job start Tue Mar 31 2020 03:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34961 * 125.52306 * 2 1 4 4 C 1.41205 * 108.24497 * 180.23891 * 3 2 1 5 5 N 1.32930 * 126.38092 * 179.78804 * 4 3 2 6 6 C 1.33835 * 119.99966 * 359.96787 * 5 4 3 7 7 O 1.21841 * 119.99938 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99878 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99646 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.29290 * 327.12785 * 9 8 6 11 11 C 1.54261 * 110.32154 * 205.00491 * 9 8 6 12 12 C 1.54390 * 105.06102 * 241.10461 * 11 9 8 13 13 N 1.48563 * 104.59072 * 23.85239 * 12 11 9 14 14 C 1.48562 * 104.22166 * 320.51748 * 13 12 11 15 15 N 1.37427 * 107.23962 * 359.76113 * 4 3 2 16 16 H 0.97004 * 126.35996 * 179.97438 * 15 4 3 17 17 N 1.36446 * 125.53080 * 179.82002 * 2 1 3 18 18 C 1.46500 * 125.84895 * 0.02562 * 17 2 1 19 19 C 1.50696 * 109.47323 * 84.71741 * 18 17 2 20 20 H 1.07995 * 120.00332 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99983 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00210 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00019 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46845 * 269.99914 * 23 21 19 25 25 H 1.48503 * 109.47399 * 29.99403 * 23 21 19 26 26 H 1.48498 * 109.47295 * 150.00010 * 23 21 19 27 27 H 1.09003 * 109.46612 * 270.17666 * 1 2 3 28 28 H 1.09001 * 109.47537 * 30.18073 * 1 2 3 29 29 H 1.09000 * 109.46744 * 150.18375 * 1 2 3 30 30 H 1.08008 * 125.87625 * 0.02562 * 3 2 1 31 31 H 0.97001 * 120.00377 * 0.02562 * 8 6 5 32 32 H 1.09000 * 110.32479 * 359.97438 * 11 9 8 33 33 H 1.09006 * 110.32712 * 122.21112 * 11 9 8 34 34 H 1.08997 * 110.41311 * 142.62945 * 12 11 9 35 35 H 1.09001 * 110.40681 * 265.07685 * 12 11 9 36 36 H 1.00897 * 110.99649 * 200.96775 * 13 12 11 37 37 H 1.09000 * 110.41083 * 280.70609 * 14 13 12 38 38 H 1.09000 * 110.41334 * 158.26467 * 14 13 12 39 39 H 1.09004 * 109.47134 * 324.71053 * 18 17 2 40 40 H 1.09010 * 109.47025 * 204.71487 * 18 17 2 41 41 H 0.97000 * 119.99462 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2912 1.0984 0.0000 4 6 3.6395 0.6790 -0.0056 5 7 4.7102 1.4668 -0.0113 6 6 4.5624 2.7969 -0.0127 7 8 3.4464 3.2858 -0.0093 8 7 5.6480 3.5956 -0.0180 9 6 5.4861 5.0516 -0.0201 10 1 4.5891 5.3314 -0.5725 11 6 6.7278 5.7278 -0.6372 12 6 7.3035 6.6134 0.4888 13 7 6.8095 5.9909 1.7441 14 6 5.4160 5.5855 1.4267 15 7 3.6386 -0.6952 -0.0034 16 1 4.4194 -1.2708 -0.0065 17 7 2.3000 -1.1104 0.0035 18 6 1.8322 -2.4987 0.0073 19 6 1.5484 -2.9371 -1.4063 20 1 1.7007 -2.2502 -2.2256 21 6 1.0931 -4.2149 -1.6535 22 7 0.9071 -5.0513 -0.6558 23 14 0.7406 -4.7581 -3.4057 24 1 -0.6739 -4.4560 -3.7424 25 1 1.6377 -4.0309 -4.3394 26 1 0.9775 -6.2189 -3.5282 27 1 -0.3633 0.0032 1.0277 28 1 -0.3634 0.8883 -0.5166 29 1 -0.3633 -0.8916 -0.5110 30 1 1.9467 2.1221 0.0004 31 1 6.5365 3.2064 -0.0211 32 1 7.4579 4.9764 -0.9380 33 1 6.4399 6.3409 -1.4912 34 1 8.3931 6.6019 0.4620 35 1 6.9307 7.6336 0.3981 36 1 6.8291 6.6509 2.5070 37 1 4.7479 6.4449 1.4828 38 1 5.0844 4.8002 2.1059 39 1 0.9210 -2.5735 0.6009 40 1 2.6008 -3.1399 0.4392 41 1 1.0905 -4.7693 0.2540 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599615856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:53 Heat of formation + Delta-G solvation = 70.074799 kcal Electronic energy + Delta-G solvation = -23034.555864 eV Core-core repulsion = 19565.879504 eV Total energy + Delta-G solvation = -3468.676360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.89842 -39.41580 -37.83433 -34.65583 -33.48183 -33.16608 -32.22014 -30.57444 -29.66244 -28.05614 -27.51914 -26.15474 -23.34798 -22.26155 -21.60230 -20.39897 -19.85484 -19.52142 -17.89300 -17.12063 -16.68162 -16.26466 -15.98344 -15.14024 -14.92174 -14.46413 -14.21863 -14.05059 -13.90581 -13.15076 -13.06646 -12.92729 -12.67402 -12.62784 -12.40816 -12.23298 -12.11794 -11.90820 -11.77875 -11.53019 -11.34545 -11.00146 -10.94342 -10.36241 -10.16202 -9.67753 -9.08897 -8.87727 -8.84869 -8.80571 -8.53521 -8.33679 -6.98737 -6.70240 -4.66731 1.74053 2.02603 3.10867 3.21383 3.24923 3.41031 3.63937 4.13290 4.17827 4.39914 4.50667 4.57089 4.81871 4.88296 4.98689 5.00779 5.25169 5.36914 5.50835 5.53489 5.58277 5.71264 5.73290 5.80998 5.86328 6.02645 6.05152 6.10796 6.22485 6.35017 6.44083 6.55862 6.73055 7.08740 7.15121 7.30964 7.38671 7.62656 7.76260 8.03517 8.28578 8.35175 8.48275 9.03909 9.64440 10.50534 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.034851 B = 0.002822 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.227104 B = 9920.738220 C =10129.302157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.188 3.812 3 C -0.332 4.332 4 C 0.490 3.510 5 N -0.712 5.712 6 C 0.685 3.315 7 O -0.634 6.634 8 N -0.717 5.717 9 C 0.162 3.838 10 H 0.092 0.908 11 C -0.133 4.133 12 C 0.035 3.965 13 N -0.665 5.665 14 C 0.024 3.976 15 N -0.472 5.472 16 H 0.444 0.556 17 N -0.344 5.344 18 C 0.246 3.754 19 C -0.632 4.632 20 H 0.064 0.936 21 C 0.031 3.969 22 N -0.895 5.895 23 Si 1.077 2.923 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.280 1.280 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.184 0.816 31 H 0.398 0.602 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.334 0.666 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.040 0.960 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.906 15.633 2.423 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.063 3.937 3 C -0.364 4.364 4 C 0.237 3.763 5 N -0.476 5.476 6 C 0.384 3.616 7 O -0.517 6.517 8 N -0.370 5.370 9 C 0.054 3.946 10 H 0.110 0.890 11 C -0.171 4.171 12 C -0.095 4.095 13 N -0.294 5.294 14 C -0.107 4.107 15 N -0.195 5.195 16 H 0.291 0.709 17 N -0.131 5.131 18 C 0.129 3.871 19 C -0.670 4.670 20 H 0.083 0.917 21 C -0.175 4.175 22 N -0.529 5.529 23 Si 0.903 3.097 24 H -0.208 1.208 25 H -0.211 1.211 26 H -0.205 1.205 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.201 0.799 31 H 0.232 0.768 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.149 0.851 37 H 0.063 0.937 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.746 13.409 1.461 14.661 hybrid contribution 0.411 1.923 0.939 2.179 sum 6.157 15.331 2.400 16.695 Atomic orbital electron populations 1.20641 0.86548 1.05014 1.03491 1.21273 0.94391 0.85480 0.92551 1.22205 0.91123 1.00211 1.22907 1.18682 0.91100 0.81950 0.84604 1.68050 1.28632 1.04007 1.46931 1.16640 0.83098 0.84896 0.76934 1.90717 1.24424 1.78660 1.57877 1.44735 1.08407 1.04106 1.79786 1.21343 0.98241 0.80476 0.94537 0.89029 1.22654 0.97425 0.99286 0.97767 1.22926 1.00550 0.95826 0.90190 1.63726 1.19072 1.40876 1.05741 1.23438 0.89129 0.99876 0.98211 1.44345 0.98637 1.04983 1.71538 0.70933 1.47488 0.92755 1.07582 1.65306 1.19995 0.95501 0.71680 0.99924 1.22295 1.51521 1.01678 0.91550 0.91745 1.25956 0.92947 0.92238 1.06399 1.70851 1.43958 1.37585 1.00471 0.83407 0.76949 0.76416 0.72943 1.20818 1.21149 1.20542 0.89972 0.89268 0.89174 0.79947 0.76771 0.90176 0.90482 0.90128 0.94168 0.85116 0.93741 0.89608 0.92668 0.94244 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 9.93 36.01 0.36 -1.08 16 2 C 0.19 3.48 6.92 -81.70 -0.57 2.91 16 3 C -0.33 -6.61 9.41 -39.62 -0.37 -6.99 16 4 C 0.49 10.04 8.07 -155.29 -1.25 8.79 16 5 N -0.71 -14.66 10.59 -15.79 -0.17 -14.82 16 6 C 0.69 13.76 8.47 -87.76 -0.74 13.02 16 7 O -0.63 -13.94 12.91 5.06 0.07 -13.87 16 8 N -0.72 -11.41 5.07 -57.52 -0.29 -11.70 16 9 C 0.16 2.13 3.41 -66.55 -0.23 1.90 16 10 H 0.09 1.34 7.56 -51.93 -0.39 0.94 16 11 C -0.13 -1.30 6.76 -25.34 -0.17 -1.47 16 12 C 0.03 0.30 7.47 -2.17 -0.02 0.28 16 13 N -0.67 -6.90 7.62 -109.65 -0.84 -7.74 16 14 C 0.02 0.30 7.18 -2.18 -0.02 0.28 16 15 N -0.47 -8.97 7.38 31.33 0.23 -8.74 16 16 H 0.44 7.44 8.96 -182.55 -1.64 5.81 16 17 N -0.34 -6.79 3.63 -58.04 -0.21 -7.00 16 18 C 0.25 5.24 5.02 -5.20 -0.03 5.22 16 19 C -0.63 -15.37 9.39 -34.44 -0.32 -15.69 16 20 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 21 C 0.03 0.78 5.46 -17.82 -0.10 0.68 16 22 N -0.89 -23.56 13.65 55.43 0.76 -22.80 16 23 Si 1.08 22.60 29.90 -169.99 -5.08 17.51 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.29 -5.88 7.11 56.52 0.40 -5.47 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 1.42 7.80 -51.93 -0.41 1.01 16 30 H 0.18 3.79 5.77 -52.48 -0.30 3.48 16 31 H 0.40 5.88 8.46 -40.82 -0.35 5.54 16 32 H 0.08 0.78 7.67 -51.93 -0.40 0.39 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.33 2.82 8.92 -39.29 -0.35 2.46 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 1.26 8.05 -51.93 -0.42 0.85 16 39 H 0.06 1.16 7.76 -51.93 -0.40 0.76 16 40 H 0.04 0.86 8.01 -51.92 -0.42 0.44 16 41 H 0.27 6.88 7.22 -40.82 -0.29 6.59 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -30.31 342.42 -10.93 -41.24 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -7.10 Total: 14.91 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -3.45 Total: 7.85 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -0.52 Total: -72.80 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.07 Total: -13.87 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.08 Total: 17.51 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.31 -10.93 -41.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599615856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.316 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds