Wall clock time and date at job start Tue Mar 31 2020 03:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34961 * 125.52306 * 2 1 4 4 C 1.41205 * 108.24497 * 180.23891 * 3 2 1 5 5 N 1.32930 * 126.38092 * 179.78804 * 4 3 2 6 6 C 1.33835 * 119.99966 * 359.96787 * 5 4 3 7 7 O 1.21841 * 119.99938 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99878 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99646 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.29290 * 327.12785 * 9 8 6 11 11 C 1.54261 * 110.32154 * 205.00491 * 9 8 6 12 12 C 1.54390 * 105.06102 * 241.10461 * 11 9 8 13 13 N 1.48563 * 104.59072 * 23.85239 * 12 11 9 14 14 C 1.48562 * 104.22166 * 320.51748 * 13 12 11 15 15 N 1.37427 * 107.23962 * 359.76113 * 4 3 2 16 16 H 0.97004 * 126.35996 * 179.97438 * 15 4 3 17 17 N 1.36446 * 125.53080 * 179.82002 * 2 1 3 18 18 C 1.46500 * 125.84895 * 0.02562 * 17 2 1 19 19 C 1.50696 * 109.47323 * 84.71741 * 18 17 2 20 20 H 1.07995 * 120.00332 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99983 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00210 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00019 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46845 * 269.99914 * 23 21 19 25 25 H 1.48503 * 109.47399 * 29.99403 * 23 21 19 26 26 H 1.48498 * 109.47295 * 150.00010 * 23 21 19 27 27 H 1.09003 * 109.46612 * 270.17666 * 1 2 3 28 28 H 1.09001 * 109.47537 * 30.18073 * 1 2 3 29 29 H 1.09000 * 109.46744 * 150.18375 * 1 2 3 30 30 H 1.08008 * 125.87625 * 0.02562 * 3 2 1 31 31 H 0.97001 * 120.00377 * 0.02562 * 8 6 5 32 32 H 1.09000 * 110.32479 * 359.97438 * 11 9 8 33 33 H 1.09006 * 110.32712 * 122.21112 * 11 9 8 34 34 H 1.08997 * 110.41311 * 142.62945 * 12 11 9 35 35 H 1.09001 * 110.40681 * 265.07685 * 12 11 9 36 36 H 1.00897 * 110.99649 * 200.96775 * 13 12 11 37 37 H 1.09000 * 110.41083 * 280.70609 * 14 13 12 38 38 H 1.09000 * 110.41334 * 158.26467 * 14 13 12 39 39 H 1.09004 * 109.47134 * 324.71053 * 18 17 2 40 40 H 1.09010 * 109.47025 * 204.71487 * 18 17 2 41 41 H 0.97000 * 119.99462 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2912 1.0984 0.0000 4 6 3.6395 0.6790 -0.0056 5 7 4.7102 1.4668 -0.0113 6 6 4.5624 2.7969 -0.0127 7 8 3.4464 3.2858 -0.0093 8 7 5.6480 3.5956 -0.0180 9 6 5.4861 5.0516 -0.0201 10 1 4.5891 5.3314 -0.5725 11 6 6.7278 5.7278 -0.6372 12 6 7.3035 6.6134 0.4888 13 7 6.8095 5.9909 1.7441 14 6 5.4160 5.5855 1.4267 15 7 3.6386 -0.6952 -0.0034 16 1 4.4194 -1.2708 -0.0065 17 7 2.3000 -1.1104 0.0035 18 6 1.8322 -2.4987 0.0073 19 6 1.5484 -2.9371 -1.4063 20 1 1.7007 -2.2502 -2.2256 21 6 1.0931 -4.2149 -1.6535 22 7 0.9071 -5.0513 -0.6558 23 14 0.7406 -4.7581 -3.4057 24 1 -0.6739 -4.4560 -3.7424 25 1 1.6377 -4.0309 -4.3394 26 1 0.9775 -6.2189 -3.5282 27 1 -0.3633 0.0032 1.0277 28 1 -0.3634 0.8883 -0.5166 29 1 -0.3633 -0.8916 -0.5110 30 1 1.9467 2.1221 0.0004 31 1 6.5365 3.2064 -0.0211 32 1 7.4579 4.9764 -0.9380 33 1 6.4399 6.3409 -1.4912 34 1 8.3931 6.6019 0.4620 35 1 6.9307 7.6336 0.3981 36 1 6.8291 6.6509 2.5070 37 1 4.7479 6.4449 1.4828 38 1 5.0844 4.8002 2.1059 39 1 0.9210 -2.5735 0.6009 40 1 2.6008 -3.1399 0.4392 41 1 1.0905 -4.7693 0.2540 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599615856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:52 Heat of formation + Delta-G solvation = 47.108029 kcal Electronic energy + Delta-G solvation = -23035.551778 eV Core-core repulsion = 19565.879504 eV Total energy + Delta-G solvation = -3469.672274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.44246 -40.69273 -39.00438 -36.35705 -34.98397 -34.61226 -33.71613 -32.19764 -30.57003 -29.14040 -28.85616 -27.84375 -25.11554 -23.65955 -22.54797 -21.55443 -21.26401 -20.97124 -19.60035 -18.61867 -17.93092 -17.54806 -17.24369 -16.69855 -16.22087 -15.98860 -15.73038 -15.48234 -15.10372 -14.68794 -14.41875 -14.32376 -14.01775 -13.89196 -13.77569 -13.41395 -13.28022 -13.22068 -13.01116 -12.69167 -12.59303 -12.41016 -12.00590 -11.86367 -11.81213 -11.22954 -10.85852 -10.72657 -10.37939 -9.97938 -9.90801 -9.53186 -8.88736 -8.34941 -6.63505 0.20354 0.48916 1.53584 1.57123 1.58160 1.77552 2.29924 2.45460 2.89943 3.00564 3.08624 3.34063 3.62157 3.71068 3.80078 4.10453 4.22276 4.24303 4.32189 4.38933 4.47725 4.51749 4.69164 4.71988 4.77909 4.81348 4.88122 4.91331 5.02507 5.04836 5.12812 5.25558 5.46038 5.63779 5.81252 5.92935 5.97869 6.08175 6.30773 6.38996 6.43117 6.85831 7.00369 7.12635 8.11099 8.55910 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.034851 B = 0.002822 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.227104 B = 9920.738220 C =10129.302157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.196 3.804 3 C -0.345 4.345 4 C 0.475 3.525 5 N -0.721 5.721 6 C 0.673 3.327 7 O -0.659 6.659 8 N -0.705 5.705 9 C 0.152 3.848 10 H 0.074 0.926 11 C -0.126 4.126 12 C 0.039 3.961 13 N -0.674 5.674 14 C 0.031 3.969 15 N -0.469 5.469 16 H 0.451 0.549 17 N -0.351 5.351 18 C 0.256 3.744 19 C -0.635 4.635 20 H 0.049 0.951 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 1.114 2.886 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.282 1.282 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.175 0.825 31 H 0.404 0.596 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.346 0.654 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.200 16.801 2.013 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.071 3.929 3 C -0.378 4.378 4 C 0.222 3.778 5 N -0.486 5.486 6 C 0.371 3.629 7 O -0.544 6.544 8 N -0.358 5.358 9 C 0.045 3.955 10 H 0.092 0.908 11 C -0.164 4.164 12 C -0.090 4.090 13 N -0.305 5.305 14 C -0.100 4.100 15 N -0.193 5.193 16 H 0.299 0.701 17 N -0.138 5.138 18 C 0.138 3.862 19 C -0.673 4.673 20 H 0.067 0.933 21 C -0.208 4.208 22 N -0.554 5.554 23 Si 0.936 3.064 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.207 1.207 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.098 0.902 30 H 0.192 0.808 31 H 0.239 0.761 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.163 0.837 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.079 14.618 1.066 15.867 hybrid contribution 0.366 1.634 1.100 2.004 sum 6.445 16.252 2.167 17.617 Atomic orbital electron populations 1.20812 0.83714 1.05527 1.05350 1.21840 0.95981 0.84455 0.90666 1.22116 0.91256 1.00224 1.24171 1.18905 0.91591 0.82420 0.84916 1.68111 1.28824 1.04391 1.47275 1.16950 0.83759 0.85054 0.77095 1.90688 1.25552 1.78971 1.59189 1.44758 1.07599 1.05055 1.78422 1.21571 0.99423 0.78974 0.95483 0.90755 1.22659 0.95663 0.99437 0.98687 1.22986 1.01316 0.96215 0.88509 1.63672 1.17568 1.42114 1.07107 1.23227 0.90666 0.99409 0.96684 1.44328 0.98755 1.04702 1.71534 0.70063 1.47433 0.93222 1.07444 1.65728 1.19753 0.95649 0.72300 0.98481 1.22433 1.50977 1.01385 0.92504 0.93255 1.27021 0.92555 0.92566 1.08678 1.70932 1.45628 1.38165 1.00675 0.82909 0.77687 0.75959 0.69812 1.19247 1.20670 1.20695 0.87335 0.87086 0.90151 0.80774 0.76115 0.90049 0.88733 0.88677 0.92324 0.83747 0.92512 0.92632 0.91868 0.94567 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 9.93 71.24 0.71 -1.93 16 2 C 0.20 7.09 6.92 41.09 0.28 7.37 16 3 C -0.35 -13.80 9.41 22.24 0.21 -13.59 16 4 C 0.47 19.64 8.07 133.95 1.08 20.72 16 5 N -0.72 -30.07 10.59 -322.55 -3.42 -33.48 16 6 C 0.67 27.44 8.47 179.35 1.52 28.95 16 7 O -0.66 -29.60 12.91 -4.80 -0.06 -29.66 16 8 N -0.71 -22.47 5.07 -454.05 -2.30 -24.77 16 9 C 0.15 3.93 3.41 45.89 0.16 4.09 16 10 H 0.07 2.18 7.56 -2.39 -0.02 2.16 16 11 C -0.13 -2.21 6.76 31.49 0.21 -2.00 16 12 C 0.04 0.56 7.47 86.45 0.65 1.21 16 13 N -0.67 -12.81 7.62 -500.83 -3.82 -16.63 16 14 C 0.03 0.74 7.18 86.45 0.62 1.36 16 15 N -0.47 -17.86 7.38 -54.79 -0.40 -18.26 16 16 H 0.45 15.20 8.96 -213.28 -1.91 13.29 16 17 N -0.35 -13.71 3.63 -337.53 -1.23 -14.94 16 18 C 0.26 10.79 5.02 85.63 0.43 11.22 16 19 C -0.63 -30.55 9.39 25.60 0.24 -30.31 16 20 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 21 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 22 N -0.92 -47.99 13.65 21.45 0.29 -47.70 16 23 Si 1.11 44.68 29.90 68.60 2.05 46.73 16 24 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 27 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.08 2.41 7.80 -2.39 -0.02 2.39 16 30 H 0.18 7.32 5.77 -2.91 -0.02 7.31 16 31 H 0.40 11.80 8.46 -92.71 -0.78 11.02 16 32 H 0.08 1.43 7.67 -2.39 -0.02 1.41 16 33 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.35 5.15 8.92 -89.70 -0.80 4.35 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.67 8.05 -2.39 -0.02 1.65 16 39 H 0.06 2.60 7.76 -2.38 -0.02 2.58 16 40 H 0.04 1.56 8.01 -2.38 -0.02 1.54 16 41 H 0.26 13.53 7.22 -92.71 -0.67 12.86 16 Total: -1.00 -64.73 342.42 -4.63 -69.36 By element: Atomic # 1 Polarization: 44.43 SS G_CDS: -2.31 Total: 42.12 kcal Atomic # 6 Polarization: 20.67 SS G_CDS: 6.57 Total: 27.24 kcal Atomic # 7 Polarization: -144.91 SS G_CDS: -10.87 Total: -155.79 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.06 Total: -29.66 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.05 Total: 46.73 kcal Total: -64.73 -4.63 -69.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599615856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.468 kcal (2) G-P(sol) polarization free energy of solvation -64.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds