Wall clock time and date at job start Tue Mar 31 2020 02:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47464 * 2 1 4 4 C 1.34258 * 125.75909 * 124.99531 * 3 2 1 5 5 C 1.38035 * 107.41861 * 179.97438 * 4 3 2 6 6 C 1.47427 * 126.41633 * 179.97438 * 5 4 3 7 7 O 1.21599 * 120.00622 * 214.11767 * 6 5 4 8 8 N 1.34778 * 119.99655 * 34.12003 * 6 5 4 9 9 C 1.47425 * 125.64944 * 355.58970 * 8 6 5 10 10 C 1.54911 * 104.83245 * 155.90711 * 9 8 6 11 11 C 1.55154 * 101.61595 * 36.99583 * 10 9 8 12 12 O 1.42898 * 110.72190 * 82.87604 * 11 10 9 13 13 C 1.50700 * 110.72185 * 206.15063 * 11 10 9 14 14 H 1.08004 * 119.99697 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00275 * 179.97438 * 13 11 10 16 16 N 1.31513 * 119.99702 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00030 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47499 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47020 * 120.00458 * 17 15 13 20 20 H 1.48497 * 109.47723 * 240.00245 * 17 15 13 21 21 C 1.47027 * 125.64836 * 175.63692 * 8 6 5 22 22 C 1.41296 * 107.17370 * 0.23126 * 5 4 3 23 23 C 1.50690 * 125.99084 * 179.73809 * 22 5 4 24 24 N 1.30446 * 108.01813 * 359.61238 * 22 5 4 25 25 H 1.09002 * 109.46984 * 300.00546 * 1 2 3 26 26 H 1.09000 * 109.47244 * 59.99945 * 1 2 3 27 27 H 1.09000 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47261 * 240.00129 * 2 1 3 29 29 H 1.09006 * 109.47165 * 119.99361 * 2 1 3 30 30 H 1.07998 * 126.28469 * 0.02562 * 4 3 2 31 31 H 1.09000 * 110.36380 * 37.07101 * 9 8 6 32 32 H 1.09000 * 110.36579 * 274.74974 * 9 8 6 33 33 H 1.09007 * 111.00164 * 155.08103 * 10 9 8 34 34 H 1.08992 * 111.00706 * 278.90130 * 10 9 8 35 35 H 0.96703 * 113.99983 * 179.97438 * 12 11 10 36 36 H 0.97000 * 119.99745 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.88318 * 300.43296 * 21 8 6 38 38 H 1.08996 * 109.88489 * 61.44765 * 21 8 6 39 39 H 1.09002 * 109.47134 * 89.99791 * 23 22 5 40 40 H 1.08997 * 109.47747 * 209.99688 * 23 22 5 41 41 H 1.09004 * 109.47534 * 330.00205 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8690 1.9126 0.8925 5 6 3.0715 3.2308 0.5363 6 6 3.9326 4.2034 1.2334 7 8 3.6147 5.3763 1.2758 8 7 5.0724 3.7924 1.8238 9 6 5.5305 2.3950 1.9284 10 6 7.0678 2.4928 2.0921 11 6 7.2076 3.7585 2.9785 12 8 7.0204 3.4334 4.3574 13 6 8.5459 4.4164 2.7613 14 1 9.2494 3.9910 2.0608 15 6 8.8719 5.5619 3.4559 16 7 8.0151 6.0801 4.3085 17 14 10.5311 6.3769 3.1871 18 1 11.3063 5.6028 2.1846 19 1 10.3277 7.7624 2.6927 20 1 11.2782 6.4140 4.4700 21 6 6.0644 4.6634 2.4711 22 6 2.2941 3.4751 -0.6180 23 6 2.1971 4.7833 -1.3596 24 7 1.6773 2.3691 -0.9307 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.3138 1.4022 1.7339 31 1 5.2798 1.8448 1.0214 32 1 5.0859 1.9143 2.7998 33 1 7.4631 1.6138 2.6012 34 1 7.5551 2.6355 1.1277 35 1 7.0982 4.1904 4.9541 36 1 8.2446 6.8858 4.7975 37 1 6.4537 5.3819 1.7498 38 1 5.6056 5.1900 3.3079 39 1 2.9664 4.8216 -2.1309 40 1 1.2139 4.8664 -1.8228 41 1 2.3409 5.6082 -0.6618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600064510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:18 Heat of formation + Delta-G solvation = -10.886854 kcal Electronic energy + Delta-G solvation = -24040.438632 eV Core-core repulsion = 20535.958760 eV Total energy + Delta-G solvation = -3504.479872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.34577 -39.00789 -37.05416 -34.84676 -34.29570 -32.16478 -31.53663 -30.48493 -29.59553 -27.87937 -27.55761 -25.20265 -23.77807 -22.77243 -21.35656 -20.23487 -19.43064 -18.65924 -17.21852 -16.87126 -16.14835 -15.72349 -15.40998 -14.81628 -14.64029 -14.37787 -14.12827 -14.00405 -13.21358 -13.12358 -12.99727 -12.80434 -12.69335 -12.47390 -12.27165 -11.98300 -11.82301 -11.67436 -11.58357 -11.41199 -11.06901 -10.83080 -10.66151 -10.63046 -10.47944 -10.16790 -9.41429 -9.28457 -9.24302 -8.67227 -8.50155 -8.29807 -7.81148 -6.29222 -4.37669 1.68445 2.31487 2.39455 3.20243 3.29336 3.32605 3.62271 3.84603 4.24485 4.27935 4.63727 4.68213 4.79635 4.90177 4.97762 5.15527 5.31652 5.34798 5.40889 5.47163 5.67571 5.72419 5.77724 5.79456 5.83456 5.98524 6.00022 6.13063 6.23181 6.49655 6.65144 6.76383 6.84630 6.87243 7.04354 7.28554 7.39747 7.67388 7.73965 8.00099 8.29545 8.65348 8.86588 9.31227 9.43217 10.78581 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026511 B = 0.003962 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.917365 B = 7066.154443 C = 7623.065756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.128 3.872 3 N -0.365 5.365 4 C 0.092 3.908 5 C -0.271 4.271 6 C 0.598 3.402 7 O -0.550 6.550 8 N -0.607 5.607 9 C 0.100 3.900 10 C -0.118 4.118 11 C 0.249 3.751 12 O -0.587 6.587 13 C -0.537 4.537 14 H 0.067 0.933 15 C 0.070 3.930 16 N -0.895 5.895 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 C 0.104 3.896 22 C 0.125 3.875 23 C -0.080 4.080 24 N -0.303 5.303 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.182 0.818 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.386 0.614 36 H 0.270 0.730 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.729 -11.537 -7.050 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 N -0.144 5.144 4 C -0.058 4.058 5 C -0.286 4.286 6 C 0.386 3.614 7 O -0.430 6.430 8 N -0.340 5.340 9 C -0.023 4.023 10 C -0.156 4.156 11 C 0.208 3.792 12 O -0.397 6.397 13 C -0.575 4.575 14 H 0.085 0.915 15 C -0.133 4.133 16 N -0.535 5.535 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.018 4.018 22 C -0.042 4.042 23 C -0.139 4.139 24 N -0.126 5.126 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.199 0.801 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.238 0.762 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.918 -12.056 -7.983 18.738 hybrid contribution 1.509 1.252 0.837 2.132 sum -10.409 -10.804 -7.146 16.617 Atomic orbital electron populations 1.22053 0.93675 1.02825 1.03751 1.21757 0.96240 0.77229 1.04022 1.48425 1.35041 1.10295 1.20674 1.23232 0.93458 0.93726 0.95379 1.20328 1.10417 0.94443 1.03421 1.16907 0.79542 0.86855 0.78120 1.90713 1.72550 1.18103 1.61606 1.48619 1.20713 1.09108 1.55513 1.22405 0.96692 0.83621 0.99605 1.22760 0.92632 0.99956 1.00264 1.19485 0.91260 0.88539 0.79913 1.86060 1.94732 1.40624 1.18282 1.21566 1.00911 1.09967 1.25093 0.91467 1.25075 0.97598 0.96299 0.94312 1.69584 1.35260 1.22246 1.26366 0.86342 0.83146 0.79196 0.78188 1.19597 1.20734 1.20751 1.23021 0.88343 0.93736 0.96669 1.22379 0.93006 0.94925 0.93888 1.20336 1.02453 0.91163 0.99905 1.77041 1.24851 0.96742 1.13927 0.92001 0.91010 0.90668 0.89517 0.88405 0.80062 0.92013 0.91978 0.90583 0.90542 0.76158 0.91949 0.91636 0.91732 0.90519 0.91047 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.09 37.16 0.37 -0.81 16 2 C 0.13 0.99 7.21 -4.04 -0.03 0.96 16 3 N -0.36 -4.53 3.65 -60.81 -0.22 -4.75 16 4 C 0.09 1.24 9.50 -16.57 -0.16 1.08 16 5 C -0.27 -4.62 5.67 -105.07 -0.60 -5.22 16 6 C 0.60 12.35 7.67 -12.52 -0.10 12.25 16 7 O -0.55 -13.07 15.81 5.28 0.08 -12.99 16 8 N -0.61 -12.55 3.33 -171.75 -0.57 -13.13 16 9 C 0.10 1.71 5.35 -2.53 -0.01 1.70 16 10 C -0.12 -2.30 6.22 -24.58 -0.15 -2.45 16 11 C 0.25 5.93 0.86 -89.91 -0.08 5.85 16 12 O -0.59 -14.59 13.09 -35.23 -0.46 -15.05 16 13 C -0.54 -13.90 8.11 -34.44 -0.28 -14.18 16 14 H 0.07 1.71 7.76 -52.48 -0.41 1.31 16 15 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 16 N -0.90 -23.68 10.98 55.43 0.61 -23.07 16 17 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C 0.10 2.51 5.54 -3.03 -0.02 2.49 16 22 C 0.13 2.01 7.26 -82.02 -0.60 1.42 16 23 C -0.08 -1.12 10.24 36.00 0.37 -0.75 16 24 N -0.30 -4.53 12.33 33.89 0.42 -4.11 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.51 8.06 -51.93 -0.42 0.09 16 30 H 0.18 1.97 6.46 -52.49 -0.34 1.64 16 31 H 0.06 0.90 6.58 -51.93 -0.34 0.55 16 32 H 0.06 0.99 7.71 -51.93 -0.40 0.59 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.45 8.02 -51.93 -0.42 1.03 16 35 H 0.39 9.97 6.99 45.56 0.32 10.29 16 36 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 37 H 0.07 1.71 7.81 -51.93 -0.41 1.31 16 38 H 0.06 1.71 8.07 -51.93 -0.42 1.29 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.53 6.61 -51.93 -0.34 1.18 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -31.33 338.44 -6.70 -38.02 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.27 Total: 10.60 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.36 Total: 4.07 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.23 Total: -45.06 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.38 Total: -28.04 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.33 -6.70 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600064510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.138 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds